Wall clock time and date at job start Tue Mar 31 2020 16:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38821 * 120.35789 * 2 1 4 4 C 1.38384 * 118.48789 * 179.75233 * 3 2 1 5 5 C 1.38927 * 119.10758 * 0.55469 * 4 3 2 6 6 O 1.35671 * 119.68132 * 179.70743 * 5 4 3 7 7 C 1.42902 * 116.99623 * 179.72840 * 6 5 4 8 8 H 1.09003 * 110.76884 * 333.20126 * 7 6 5 9 9 C 1.55138 * 110.70876 * 96.40385 * 7 6 5 10 10 C 1.54906 * 101.65573 * 154.03542 * 9 7 6 11 11 N 1.47840 * 104.79510 * 322.92945 * 10 9 7 12 12 C 1.46897 * 110.99988 * 146.36231 * 11 10 9 13 13 C 1.53002 * 109.47379 * 179.15624 * 12 11 10 14 14 C 1.52997 * 109.47352 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.47116 * 59.99848 * 14 13 12 16 16 C 1.50702 * 109.46657 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99833 * 120.00775 * 16 15 14 18 18 C 1.37871 * 120.00134 * 299.99916 * 16 15 14 19 19 N 1.31512 * 120.00455 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99767 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47222 * 60.00469 * 20 18 16 22 22 H 1.48508 * 109.46900 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46982 * 299.99845 * 20 18 16 24 24 C 1.52992 * 109.47248 * 300.00260 * 15 14 13 25 25 C 1.52997 * 109.47274 * 59.99837 * 24 15 14 26 26 C 1.47446 * 108.56768 * 24.09731 * 11 10 9 27 27 N 1.32244 * 120.62960 * 359.43561 * 5 4 3 28 28 C 1.31971 * 121.64615 * 0.27466 * 27 5 4 29 29 H 1.08997 * 109.47178 * 269.97434 * 1 2 3 30 30 H 1.09008 * 109.46720 * 29.97631 * 1 2 3 31 31 H 1.09002 * 109.47364 * 149.97384 * 1 2 3 32 32 H 1.07999 * 120.75917 * 0.02882 * 3 2 1 33 33 H 1.07992 * 120.44740 * 180.25861 * 4 3 2 34 34 H 1.09006 * 110.98929 * 35.94010 * 9 7 6 35 35 H 1.09000 * 111.02473 * 272.14492 * 9 7 6 36 36 H 1.08998 * 110.36925 * 204.09914 * 10 9 7 37 37 H 1.08993 * 110.46447 * 81.81035 * 10 9 7 38 38 H 1.08991 * 109.47497 * 299.15883 * 12 11 10 39 39 H 1.09004 * 109.47345 * 300.00647 * 13 12 11 40 40 H 1.08999 * 109.46689 * 59.99804 * 13 12 11 41 41 H 1.09007 * 109.46877 * 299.99980 * 14 13 12 42 42 H 1.08998 * 109.47188 * 180.02562 * 14 13 12 43 43 H 1.08995 * 109.46793 * 60.00520 * 15 14 13 44 44 H 0.96996 * 120.00566 * 179.97438 * 19 18 16 45 45 H 1.09007 * 109.47077 * 300.00071 * 24 15 14 46 46 H 1.08999 * 109.47327 * 180.02562 * 24 15 14 47 47 H 1.09008 * 109.47298 * 179.97438 * 25 24 15 48 48 H 1.09007 * 109.46877 * 60.00112 * 25 24 15 49 49 H 1.08996 * 109.88895 * 118.41939 * 26 11 10 50 50 H 1.09001 * 109.88694 * 239.60335 * 26 11 10 51 51 H 1.08002 * 119.57600 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2086 1.1979 0.0000 4 6 3.5917 1.1527 0.0053 5 6 4.2276 -0.0825 -0.0014 6 8 5.5831 -0.1403 -0.0024 7 6 6.1769 -1.4401 -0.0033 8 1 5.5104 -2.1699 0.4563 9 6 6.5511 -1.8712 -1.4459 10 6 7.7086 -2.8669 -1.1846 11 7 8.4527 -2.2902 -0.0447 12 6 9.0072 -3.3475 0.8111 13 6 9.7861 -2.7135 1.9653 14 6 10.3642 -3.8147 2.8563 15 6 11.3030 -4.6977 2.0316 16 6 11.8718 -5.7828 2.9092 17 1 11.6956 -6.8205 2.6675 18 6 12.6173 -5.4507 4.0204 19 7 12.8317 -4.1870 4.3150 20 14 13.3230 -6.7959 5.1078 21 1 14.2345 -7.6523 4.3072 22 1 14.0793 -6.1808 6.2281 23 1 12.2167 -7.6235 5.6521 24 6 10.5241 -5.3317 0.8775 25 6 9.9461 -4.2304 -0.0135 26 6 7.5412 -1.4172 0.7175 27 7 3.5243 -1.2024 -0.0014 28 6 2.2046 -1.1912 -0.0006 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6870 2.1435 0.0005 33 1 4.1690 2.0654 0.0096 34 1 6.8943 -1.0184 -2.0316 35 1 5.7129 -2.3667 -1.9358 36 1 8.3526 -2.9385 -2.0611 37 1 7.3147 -3.8489 -0.9229 38 1 8.1951 -3.9545 1.2110 39 1 10.5983 -2.1064 1.5653 40 1 9.1174 -2.0841 2.5524 41 1 9.5522 -4.4221 3.2563 42 1 10.9187 -3.3630 3.6788 43 1 12.1149 -4.0903 1.6317 44 1 13.3558 -3.9534 5.0970 45 1 9.7121 -5.9390 1.2775 46 1 11.1928 -5.9611 0.2903 47 1 9.3915 -4.6822 -0.8361 48 1 10.7581 -3.6231 -0.4135 49 1 7.4299 -1.7946 1.7340 50 1 7.9327 -0.4001 0.7381 51 1 1.6636 -2.1260 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173339454.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:32 Heat of formation + Delta-G solvation = -31.207588 kcal Electronic energy + Delta-G solvation = -28156.058993 eV Core-core repulsion = 24439.967053 eV Total energy + Delta-G solvation = -3716.091940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.76555 -40.72328 -39.19167 -37.65584 -34.79369 -34.10233 -32.93742 -32.26399 -31.56923 -29.78795 -29.27081 -27.50005 -26.28397 -24.90470 -23.54869 -23.17493 -22.90360 -21.75050 -21.31587 -20.44367 -19.61006 -18.38840 -18.01745 -17.22690 -16.65602 -16.44174 -16.28720 -16.02963 -15.60543 -15.18293 -15.13126 -14.86469 -14.74577 -14.61663 -14.39655 -14.10355 -14.00627 -13.67983 -13.61110 -13.29767 -13.14554 -13.05837 -12.91532 -12.82743 -12.63175 -12.58251 -12.38984 -12.16802 -12.06118 -11.84286 -11.82878 -11.63124 -11.52187 -11.19845 -10.82997 -10.72675 -10.54398 -10.48280 -10.34788 -9.34344 -9.27371 -8.05578 -6.19796 0.16836 0.29963 1.41187 1.42399 1.49971 1.94517 2.44178 2.76009 2.89397 3.20347 3.31243 3.48642 3.61165 3.89934 3.95060 3.99261 4.02032 4.04343 4.08911 4.16135 4.27642 4.40272 4.44208 4.48683 4.59194 4.63620 4.71502 4.78613 4.81122 4.81835 4.84963 4.88623 4.90202 4.93736 4.96169 4.97261 5.01408 5.07476 5.17641 5.21852 5.33813 5.37351 5.40931 5.48238 5.61218 5.62483 5.70538 5.96222 6.04801 6.08573 6.23069 6.27387 6.43019 6.86907 6.92893 7.47881 8.98055 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023054 B = 0.002099 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.264714 B =13333.796987 C =13696.039412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.176 4.176 3 C -0.041 4.041 4 C -0.196 4.196 5 C 0.288 3.712 6 O -0.306 6.306 7 C 0.078 3.922 8 H 0.088 0.912 9 C -0.130 4.130 10 C 0.045 3.955 11 N -0.525 5.525 12 C 0.095 3.905 13 C -0.098 4.098 14 C -0.099 4.099 15 C 0.045 3.955 16 C -0.535 4.535 17 H 0.051 0.949 18 C 0.010 3.990 19 N -0.917 5.917 20 Si 0.952 3.048 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.100 4.100 25 C -0.097 4.097 26 C 0.047 3.953 27 N -0.560 5.560 28 C 0.122 3.878 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.172 0.828 33 H 0.151 0.849 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.035 0.965 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.024 0.976 42 H 0.059 0.941 43 H -0.008 1.008 44 H 0.259 0.741 45 H 0.046 0.954 46 H 0.050 0.950 47 H 0.074 0.926 48 H 0.056 0.944 49 H 0.059 0.941 50 H 0.083 0.917 51 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.894 10.533 -11.875 30.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.178 4.178 3 C -0.066 4.066 4 C -0.216 4.216 5 C 0.110 3.890 6 O -0.213 6.213 7 C 0.020 3.980 8 H 0.106 0.894 9 C -0.168 4.168 10 C -0.082 4.082 11 N -0.250 5.250 12 C -0.013 4.013 13 C -0.136 4.136 14 C -0.138 4.138 15 C 0.027 3.973 16 C -0.573 4.573 17 H 0.069 0.931 18 C -0.188 4.188 19 N -0.556 5.556 20 Si 0.778 3.222 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.138 4.138 25 C -0.135 4.135 26 C -0.081 4.081 27 N -0.284 5.284 28 C -0.033 4.033 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.189 0.811 33 H 0.169 0.831 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.010 0.990 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.075 0.925 49 H 0.077 0.923 50 H 0.101 0.899 51 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -24.714 10.345 -11.931 29.328 hybrid contribution -0.055 -0.562 1.319 1.435 sum -24.769 9.783 -10.612 28.668 Atomic orbital electron populations 1.20698 0.87674 1.04180 1.03280 1.21140 0.99363 0.93385 1.03894 1.21723 0.92033 0.99898 0.92938 1.21359 0.95848 0.96513 1.07893 1.20174 0.84098 0.90918 0.93766 1.86256 1.15916 1.31578 1.87567 1.23517 0.93744 0.83190 0.97571 0.89400 1.23021 0.98300 0.99814 0.95692 1.23015 0.94111 0.96413 0.94635 1.63709 1.32633 1.19531 1.09136 1.21698 0.95794 0.91032 0.92742 1.21552 0.98573 0.97752 0.95751 1.21389 0.97119 0.96157 0.99087 1.18627 0.92715 0.93658 0.92344 1.21605 1.32165 0.93357 1.10141 0.93057 1.25760 0.96670 0.97371 0.99036 1.70017 1.40386 1.17587 1.27632 0.85712 0.78582 0.79567 0.78384 1.19687 1.21053 1.19702 1.21483 0.98594 0.97074 0.96677 1.21488 0.98353 0.96233 0.97392 1.22811 0.89748 0.99370 0.96219 1.67228 1.10913 1.30547 1.19671 1.22784 0.87515 0.99455 0.93569 0.90348 0.90067 0.90388 0.81088 0.83080 0.89947 0.89616 0.88754 0.92827 0.94734 0.93313 0.92910 0.95676 0.92271 0.98950 0.93161 0.93484 0.93150 0.90771 0.92480 0.92283 0.89874 0.80721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 10.03 71.24 0.71 0.12 16 2 C -0.18 -2.21 5.90 -19.77 -0.12 -2.32 16 3 C -0.04 -0.51 9.85 22.44 0.22 -0.29 16 4 C -0.20 -3.50 10.04 22.47 0.23 -3.28 16 5 C 0.29 6.85 7.49 84.80 0.63 7.48 16 6 O -0.31 -8.07 9.84 -89.88 -0.88 -8.96 16 7 C 0.08 2.00 3.24 31.77 0.10 2.10 16 8 H 0.09 2.41 6.96 -2.39 -0.02 2.39 16 9 C -0.13 -2.95 6.80 31.98 0.22 -2.74 16 10 C 0.05 1.11 5.40 86.77 0.47 1.58 16 11 N -0.52 -15.74 5.03 -860.40 -4.33 -20.06 16 12 C 0.10 3.29 1.53 44.92 0.07 3.36 16 13 C -0.10 -3.98 5.07 30.59 0.16 -3.82 16 14 C -0.10 -4.84 4.98 30.59 0.15 -4.69 16 15 C 0.04 2.31 2.10 -11.54 -0.02 2.29 16 16 C -0.53 -30.20 8.56 25.60 0.22 -29.98 16 17 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 18 C 0.01 0.57 5.30 84.65 0.45 1.01 16 19 N -0.92 -54.33 11.32 21.44 0.24 -54.08 16 20 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 C -0.10 -4.19 5.14 30.59 0.16 -4.03 16 25 C -0.10 -3.38 5.08 30.59 0.16 -3.23 16 26 C 0.05 1.34 5.92 86.65 0.51 1.85 16 27 N -0.56 -12.95 8.63 -308.95 -2.67 -15.62 16 28 C 0.12 2.04 10.85 84.63 0.92 2.96 16 29 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.08 0.28 8.10 -2.38 -0.02 0.26 16 31 H 0.08 0.33 8.09 -2.39 -0.02 0.31 16 32 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 33 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.05 1.29 7.57 -2.39 -0.02 1.27 16 38 H 0.03 1.22 8.10 -2.39 -0.02 1.20 16 39 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.05 1.99 6.50 -2.39 -0.02 1.97 16 41 H 0.02 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 43 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 45 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.07 2.17 7.03 -2.38 -0.02 2.15 16 48 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 49 H 0.06 1.78 6.35 -2.39 -0.02 1.76 16 50 H 0.08 2.43 8.06 -2.39 -0.02 2.41 16 51 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -66.15 393.44 0.51 -65.64 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.89 Total: 18.11 kcal Atomic # 6 Polarization: -36.86 SS G_CDS: 5.23 Total: -31.63 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -6.75 Total: -89.77 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.88 Total: -8.96 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -66.15 0.51 -65.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173339454.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.435 kcal (2) G-P(sol) polarization free energy of solvation -66.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds