Wall clock time and date at job start Tue Mar 31 2020 16:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37991 * 120.45640 * 2 1 4 4 N 1.31949 * 120.82104 * 179.97438 * 3 2 1 5 5 C 1.31974 * 121.86125 * 359.97438 * 4 3 2 6 6 C 1.37946 * 120.82908 * 359.97438 * 5 4 3 7 7 C 1.39249 * 120.45181 * 179.97438 * 2 1 3 8 8 O 1.35742 * 120.84755 * 0.05073 * 7 2 1 9 9 C 1.42895 * 116.99953 * 174.48769 * 8 7 2 10 10 H 1.08996 * 110.63279 * 327.07432 * 9 8 7 11 11 C 1.55146 * 110.70392 * 90.37287 * 9 8 7 12 12 C 1.54908 * 101.65479 * 154.03661 * 11 9 8 13 13 N 1.47846 * 104.79259 * 322.92744 * 12 11 9 14 14 C 1.46896 * 110.99919 * 146.36656 * 13 12 11 15 15 C 1.53003 * 109.47254 * 179.15849 * 14 13 12 16 16 C 1.52998 * 109.47149 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.47185 * 59.99570 * 16 15 14 18 18 C 1.50700 * 109.47138 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99899 * 120.00224 * 18 17 16 20 20 C 1.37878 * 120.00379 * 300.00735 * 18 17 16 21 21 N 1.31510 * 119.99698 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00145 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.46946 * 89.99552 * 22 20 18 24 24 H 1.48496 * 109.46845 * 209.99868 * 22 20 18 25 25 H 1.48499 * 109.46821 * 329.99228 * 22 20 18 26 26 C 1.52995 * 109.47351 * 300.00017 * 17 16 15 27 27 C 1.52998 * 109.47518 * 59.15450 * 14 13 12 28 28 C 1.47448 * 108.56652 * 24.09597 * 13 12 11 29 29 H 1.09007 * 109.46506 * 90.00017 * 1 2 3 30 30 H 1.08998 * 109.47477 * 210.00230 * 1 2 3 31 31 H 1.08998 * 109.47096 * 330.00563 * 1 2 3 32 32 H 1.07998 * 119.58607 * 359.69851 * 3 2 1 33 33 H 1.08003 * 119.58541 * 180.02562 * 5 4 3 34 34 H 1.08003 * 120.45301 * 179.97438 * 6 5 4 35 35 H 1.09004 * 110.98603 * 272.12318 * 11 9 8 36 36 H 1.09001 * 110.99236 * 35.94173 * 11 9 8 37 37 H 1.08998 * 110.37131 * 204.10123 * 12 11 9 38 38 H 1.08994 * 110.46597 * 81.80155 * 12 11 9 39 39 H 1.09005 * 109.47119 * 299.15565 * 14 13 12 40 40 H 1.09000 * 109.46668 * 299.99456 * 15 14 13 41 41 H 1.08995 * 109.46990 * 59.99899 * 15 14 13 42 42 H 1.09005 * 109.47238 * 299.99725 * 16 15 14 43 43 H 1.08997 * 109.47471 * 179.97438 * 16 15 14 44 44 H 1.09002 * 109.46718 * 60.00436 * 17 16 15 45 45 H 0.97001 * 119.99896 * 179.97438 * 21 20 18 46 46 H 1.09005 * 109.47062 * 299.99839 * 26 17 16 47 47 H 1.09001 * 109.47058 * 180.02562 * 26 17 16 48 48 H 1.09002 * 109.46908 * 300.00098 * 27 14 13 49 49 H 1.09005 * 109.46832 * 59.99939 * 27 14 13 50 50 H 1.09002 * 109.88623 * 239.59857 * 28 13 12 51 51 H 1.09008 * 109.88339 * 118.41956 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.1895 0.0000 4 7 3.5259 1.1979 0.0005 5 6 4.2297 0.0815 0.0015 6 6 3.6046 -1.1483 0.0026 7 6 2.2128 -1.2004 0.0005 8 8 1.5609 -2.3911 0.0000 9 6 2.3611 -3.5687 -0.1217 10 1 3.2356 -3.3763 -0.7431 11 6 2.7816 -4.0930 1.2767 12 6 2.9954 -5.6010 0.9941 13 7 1.9381 -5.9569 0.0239 14 6 2.4076 -6.9871 -0.9121 15 6 1.2819 -7.3435 -1.8850 16 6 1.7712 -8.4160 -2.8603 17 6 2.1849 -9.6649 -2.0794 18 6 2.6663 -10.7216 -3.0401 19 1 3.6746 -11.1010 -2.9646 20 6 1.8195 -11.2038 -4.0155 21 7 0.5915 -10.7421 -4.1071 22 14 2.4160 -12.5141 -5.2058 23 1 2.1323 -13.8591 -4.6442 24 1 1.7115 -12.3610 -6.5041 25 1 3.8784 -12.3635 -5.4155 26 6 3.3107 -9.3085 -1.1065 27 6 2.8209 -8.2359 -0.1308 28 6 1.5304 -4.7359 -0.6951 29 1 -0.3632 0.0000 -1.0278 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6672 2.1252 -0.0049 33 1 5.3086 0.1312 0.0023 34 1 4.1865 -2.0581 0.0031 35 1 3.7076 -3.6227 1.6077 36 1 1.9859 -3.9413 2.0061 37 1 2.8793 -6.1790 1.9109 38 1 3.9809 -5.7716 0.5609 39 1 3.2637 -6.6078 -1.4703 40 1 0.4259 -7.7228 -1.3269 41 1 0.9875 -6.4538 -2.4417 42 1 2.6271 -8.0363 -3.4184 43 1 0.9691 -8.6703 -3.5532 44 1 1.3290 -10.0446 -1.5214 45 1 -0.0041 -11.0811 -4.7936 46 1 4.1666 -8.9289 -1.6647 47 1 3.6057 -10.1984 -0.5505 48 1 3.6230 -7.9820 0.5623 49 1 1.9649 -8.6151 0.4273 50 1 0.4684 -4.5488 -0.5356 51 1 1.7336 -4.8475 -1.7602 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173341526.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:55 Heat of formation + Delta-G solvation = -14.868653 kcal Electronic energy + Delta-G solvation = -28441.225097 eV Core-core repulsion = 24725.841667 eV Total energy + Delta-G solvation = -3715.383430 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.13313 -39.70374 -38.26481 -36.39128 -33.64651 -32.87030 -31.54037 -31.01413 -30.07233 -28.64086 -27.87763 -27.41320 -24.59421 -23.78525 -22.60784 -22.11198 -21.70801 -20.70510 -19.96631 -18.95642 -18.64411 -17.24576 -16.41680 -16.21535 -15.76776 -15.55134 -15.37737 -14.72403 -14.49199 -14.26104 -14.07822 -13.90585 -13.64292 -13.41695 -13.06474 -12.98843 -12.96745 -12.75978 -12.71309 -12.46352 -12.19279 -11.73282 -11.69769 -11.42323 -11.15548 -11.04905 -11.00336 -10.93347 -10.66402 -10.57358 -10.37968 -10.18198 -9.82262 -9.79310 -9.42871 -9.37113 -8.93618 -8.88684 -8.65910 -8.29361 -8.22980 -5.97147 -4.03228 0.76194 1.03990 2.67927 3.30093 3.37068 3.39908 3.47936 3.92806 4.13261 4.22244 4.35299 4.43715 4.44563 4.51922 4.59860 4.73957 4.84277 5.10185 5.13632 5.16504 5.31653 5.34954 5.36808 5.38824 5.40271 5.45397 5.52731 5.57693 5.74619 5.78480 5.82722 5.83983 5.87512 5.91919 6.10322 6.26668 6.28460 6.35567 6.40655 6.49365 6.65258 6.75379 6.91717 6.96305 7.03711 7.12349 7.21785 7.33138 7.52747 7.69891 7.76099 8.03372 8.16556 8.48335 9.01035 9.61340 11.08384 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023228 B = 0.002194 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.174648 B =12759.624647 C =13054.018513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.171 4.171 3 C 0.129 3.871 4 N -0.509 5.509 5 C 0.128 3.872 6 C -0.259 4.259 7 C 0.173 3.827 8 O -0.291 6.291 9 C 0.060 3.940 10 H 0.082 0.918 11 C -0.149 4.149 12 C 0.045 3.955 13 N -0.518 5.518 14 C 0.084 3.916 15 C -0.109 4.109 16 C -0.108 4.108 17 C 0.049 3.951 18 C -0.513 4.513 19 H 0.053 0.947 20 C 0.061 3.939 21 N -0.890 5.890 22 Si 0.888 3.112 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.107 4.107 27 C -0.106 4.106 28 C 0.050 3.950 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.139 0.861 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.035 0.965 40 H 0.062 0.938 41 H 0.041 0.959 42 H 0.030 0.970 43 H 0.094 0.906 44 H 0.026 0.974 45 H 0.259 0.741 46 H 0.044 0.956 47 H 0.049 0.951 48 H 0.043 0.957 49 H 0.064 0.936 50 H 0.090 0.910 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.006 20.920 10.197 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.174 4.174 3 C -0.027 4.027 4 N -0.221 5.221 5 C -0.028 4.028 6 C -0.280 4.280 7 C 0.119 3.881 8 O -0.201 6.201 9 C 0.003 3.997 10 H 0.100 0.900 11 C -0.188 4.188 12 C -0.083 4.083 13 N -0.243 5.243 14 C -0.023 4.023 15 C -0.147 4.147 16 C -0.146 4.146 17 C 0.030 3.970 18 C -0.551 4.551 19 H 0.071 0.929 20 C -0.140 4.140 21 N -0.529 5.529 22 Si 0.716 3.284 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.146 4.146 27 C -0.144 4.144 28 C -0.078 4.078 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.177 0.823 33 H 0.174 0.826 34 H 0.157 0.843 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.112 0.888 44 H 0.044 0.956 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.083 0.917 50 H 0.109 0.891 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.628 21.390 10.357 23.911 hybrid contribution 0.879 -1.317 -1.170 1.969 sum 3.507 20.074 9.187 22.353 Atomic orbital electron populations 1.20555 0.89475 1.03165 1.02694 1.20399 0.98174 0.91150 1.07709 1.22563 0.89755 0.96726 0.93696 1.67715 1.08088 1.31170 1.15132 1.22533 1.00317 0.86925 0.93055 1.22286 0.93988 1.01024 1.10683 1.19208 0.90722 0.86141 0.92005 1.86114 1.35873 1.11819 1.86288 1.23943 0.94423 0.83638 0.97701 0.89987 1.23252 1.02368 0.96329 0.96813 1.22949 0.93984 0.93799 0.97539 1.63790 1.36889 1.07393 1.16259 1.21976 0.96784 0.91268 0.92306 1.21737 0.97143 0.99007 0.96788 1.21615 1.01151 0.93980 0.97902 1.18651 0.92967 0.92785 0.92569 1.21238 0.98523 1.20912 1.14440 0.92880 1.24967 0.94922 0.96595 0.97540 1.69870 1.05829 1.42905 1.34303 0.86660 0.78812 0.82272 0.80641 1.20749 1.21296 1.20044 1.21630 0.99879 0.96039 0.97011 1.21603 1.00034 0.94944 0.97787 1.22830 1.00825 0.86546 0.97610 0.91043 0.90839 0.91328 0.82272 0.82621 0.84326 0.90582 0.89357 0.89612 0.93199 0.94659 0.91897 0.94028 0.95100 0.88810 0.95575 0.93089 0.93685 0.93252 0.93811 0.91684 0.89138 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 9.84 36.01 0.35 -0.43 16 2 C -0.17 -1.65 5.91 -104.34 -0.62 -2.26 16 3 C 0.13 1.18 10.86 -17.59 -0.19 0.99 16 4 N -0.51 -5.38 10.36 -13.33 -0.14 -5.52 16 5 C 0.13 1.19 11.17 -17.60 -0.20 0.99 16 6 C -0.26 -2.44 8.99 -39.30 -0.35 -2.80 16 7 C 0.17 1.84 6.69 -38.82 -0.26 1.58 16 8 O -0.29 -3.26 9.04 -18.93 -0.17 -3.43 16 9 C 0.06 0.63 2.74 -24.91 -0.07 0.57 16 10 H 0.08 0.81 6.31 -51.93 -0.33 0.48 16 11 C -0.15 -1.45 6.65 -24.59 -0.16 -1.61 16 12 C 0.04 0.51 5.40 -2.30 -0.01 0.50 16 13 N -0.52 -7.18 5.03 -223.29 -1.12 -8.30 16 14 C 0.08 1.37 1.53 -67.71 -0.10 1.26 16 15 C -0.11 -2.04 5.07 -26.73 -0.14 -2.17 16 16 C -0.11 -2.46 4.98 -26.73 -0.13 -2.60 16 17 C 0.05 1.18 2.10 -91.77 -0.19 0.99 16 18 C -0.51 -13.90 8.56 -34.44 -0.29 -14.19 16 19 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 20 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 21 N -0.89 -25.16 11.32 55.43 0.63 -24.54 16 22 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C -0.11 -2.17 5.15 -26.71 -0.14 -2.30 16 27 C -0.11 -1.79 5.09 -26.71 -0.14 -1.93 16 28 C 0.05 0.63 5.92 -2.84 -0.02 0.61 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.63 7.62 -51.93 -0.40 0.23 16 31 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.14 1.11 5.80 -52.48 -0.30 0.81 16 35 H 0.08 0.62 7.81 -51.93 -0.41 0.21 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.56 7.57 -51.93 -0.39 0.16 16 39 H 0.04 0.58 8.10 -51.93 -0.42 0.16 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.04 0.72 6.50 -51.93 -0.34 0.38 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.04 0.65 7.03 -51.93 -0.37 0.28 16 49 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.09 1.17 8.06 -51.93 -0.42 0.75 16 51 H 0.07 0.93 6.35 -51.92 -0.33 0.60 16 LS Contribution 389.30 15.07 5.87 5.87 Total: -1.00 -29.14 389.30 -11.34 -40.47 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -8.62 Total: 0.57 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -2.75 Total: -21.25 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.63 Total: -38.35 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: -0.17 Total: -3.43 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.14 -11.34 -40.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173341526.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.604 kcal (2) G-P(sol) polarization free energy of solvation -29.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds