Wall clock time and date at job start Tue Mar 31 2020 16:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37991 * 120.45640 * 2 1 4 4 N 1.31949 * 120.82104 * 179.97438 * 3 2 1 5 5 C 1.31974 * 121.86125 * 359.97438 * 4 3 2 6 6 C 1.37946 * 120.82908 * 359.97438 * 5 4 3 7 7 C 1.39249 * 120.45181 * 179.97438 * 2 1 3 8 8 O 1.35742 * 120.84755 * 0.05073 * 7 2 1 9 9 C 1.42895 * 116.99953 * 174.48769 * 8 7 2 10 10 H 1.08996 * 110.63279 * 327.07432 * 9 8 7 11 11 C 1.55146 * 110.70392 * 90.37287 * 9 8 7 12 12 C 1.54908 * 101.65479 * 154.03661 * 11 9 8 13 13 N 1.47846 * 104.79259 * 322.92744 * 12 11 9 14 14 C 1.46896 * 110.99919 * 146.36656 * 13 12 11 15 15 C 1.53003 * 109.47254 * 179.15849 * 14 13 12 16 16 C 1.52998 * 109.47149 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.47185 * 59.99570 * 16 15 14 18 18 C 1.50700 * 109.47138 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99899 * 120.00224 * 18 17 16 20 20 C 1.37878 * 120.00379 * 300.00735 * 18 17 16 21 21 N 1.31510 * 119.99698 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00145 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.46946 * 89.99552 * 22 20 18 24 24 H 1.48496 * 109.46845 * 209.99868 * 22 20 18 25 25 H 1.48499 * 109.46821 * 329.99228 * 22 20 18 26 26 C 1.52995 * 109.47351 * 300.00017 * 17 16 15 27 27 C 1.52998 * 109.47518 * 59.15450 * 14 13 12 28 28 C 1.47448 * 108.56652 * 24.09597 * 13 12 11 29 29 H 1.09007 * 109.46506 * 90.00017 * 1 2 3 30 30 H 1.08998 * 109.47477 * 210.00230 * 1 2 3 31 31 H 1.08998 * 109.47096 * 330.00563 * 1 2 3 32 32 H 1.07998 * 119.58607 * 359.69851 * 3 2 1 33 33 H 1.08003 * 119.58541 * 180.02562 * 5 4 3 34 34 H 1.08003 * 120.45301 * 179.97438 * 6 5 4 35 35 H 1.09004 * 110.98603 * 272.12318 * 11 9 8 36 36 H 1.09001 * 110.99236 * 35.94173 * 11 9 8 37 37 H 1.08998 * 110.37131 * 204.10123 * 12 11 9 38 38 H 1.08994 * 110.46597 * 81.80155 * 12 11 9 39 39 H 1.09005 * 109.47119 * 299.15565 * 14 13 12 40 40 H 1.09000 * 109.46668 * 299.99456 * 15 14 13 41 41 H 1.08995 * 109.46990 * 59.99899 * 15 14 13 42 42 H 1.09005 * 109.47238 * 299.99725 * 16 15 14 43 43 H 1.08997 * 109.47471 * 179.97438 * 16 15 14 44 44 H 1.09002 * 109.46718 * 60.00436 * 17 16 15 45 45 H 0.97001 * 119.99896 * 179.97438 * 21 20 18 46 46 H 1.09005 * 109.47062 * 299.99839 * 26 17 16 47 47 H 1.09001 * 109.47058 * 180.02562 * 26 17 16 48 48 H 1.09002 * 109.46908 * 300.00098 * 27 14 13 49 49 H 1.09005 * 109.46832 * 59.99939 * 27 14 13 50 50 H 1.09002 * 109.88623 * 239.59857 * 28 13 12 51 51 H 1.09008 * 109.88339 * 118.41956 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.1895 0.0000 4 7 3.5259 1.1979 0.0005 5 6 4.2297 0.0815 0.0015 6 6 3.6046 -1.1483 0.0026 7 6 2.2128 -1.2004 0.0005 8 8 1.5609 -2.3911 0.0000 9 6 2.3611 -3.5687 -0.1217 10 1 3.2356 -3.3763 -0.7431 11 6 2.7816 -4.0930 1.2767 12 6 2.9954 -5.6010 0.9941 13 7 1.9381 -5.9569 0.0239 14 6 2.4076 -6.9871 -0.9121 15 6 1.2819 -7.3435 -1.8850 16 6 1.7712 -8.4160 -2.8603 17 6 2.1849 -9.6649 -2.0794 18 6 2.6663 -10.7216 -3.0401 19 1 3.6746 -11.1010 -2.9646 20 6 1.8195 -11.2038 -4.0155 21 7 0.5915 -10.7421 -4.1071 22 14 2.4160 -12.5141 -5.2058 23 1 2.1323 -13.8591 -4.6442 24 1 1.7115 -12.3610 -6.5041 25 1 3.8784 -12.3635 -5.4155 26 6 3.3107 -9.3085 -1.1065 27 6 2.8209 -8.2359 -0.1308 28 6 1.5304 -4.7359 -0.6951 29 1 -0.3632 0.0000 -1.0278 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6672 2.1252 -0.0049 33 1 5.3086 0.1312 0.0023 34 1 4.1865 -2.0581 0.0031 35 1 3.7076 -3.6227 1.6077 36 1 1.9859 -3.9413 2.0061 37 1 2.8793 -6.1790 1.9109 38 1 3.9809 -5.7716 0.5609 39 1 3.2637 -6.6078 -1.4703 40 1 0.4259 -7.7228 -1.3269 41 1 0.9875 -6.4538 -2.4417 42 1 2.6271 -8.0363 -3.4184 43 1 0.9691 -8.6703 -3.5532 44 1 1.3290 -10.0446 -1.5214 45 1 -0.0041 -11.0811 -4.7936 46 1 4.1666 -8.9289 -1.6647 47 1 3.6057 -10.1984 -0.5505 48 1 3.6230 -7.9820 0.5623 49 1 1.9649 -8.6151 0.4273 50 1 0.4684 -4.5488 -0.5356 51 1 1.7336 -4.8475 -1.7602 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173341526.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:54 Heat of formation + Delta-G solvation = -30.666816 kcal Electronic energy + Delta-G solvation = -28441.910157 eV Core-core repulsion = 24725.841667 eV Total energy + Delta-G solvation = -3716.068490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.88973 -40.71552 -39.31581 -37.71701 -34.84919 -34.17546 -32.48911 -32.20224 -31.55818 -29.76784 -29.26246 -28.06544 -26.33117 -24.68692 -23.54062 -23.28815 -22.86430 -21.78368 -21.30411 -20.43861 -19.54240 -18.39490 -18.01144 -17.29283 -16.69879 -16.49041 -16.33027 -16.11269 -15.61259 -15.31595 -15.07191 -14.88781 -14.74698 -14.64000 -14.39112 -14.25133 -13.97879 -13.75619 -13.62608 -13.59203 -13.16001 -13.13868 -12.93832 -12.86290 -12.64815 -12.42056 -12.32465 -12.14234 -12.04646 -11.85670 -11.80819 -11.74874 -11.58709 -11.20377 -10.72086 -10.52257 -10.47971 -10.35471 -10.10959 -9.66029 -9.30664 -8.06534 -6.20488 0.09609 0.31269 1.40303 1.41224 1.50934 1.89439 2.43574 2.79329 2.89660 3.19891 3.37059 3.52339 3.54628 3.70590 3.79514 3.86154 3.95711 4.00784 4.08550 4.14332 4.28078 4.37837 4.40959 4.44837 4.53059 4.58875 4.71215 4.74033 4.79098 4.79878 4.80716 4.82281 4.85995 4.91565 4.95176 4.96674 5.01166 5.03750 5.16604 5.18145 5.27150 5.33937 5.41566 5.49116 5.61643 5.62541 5.70598 5.97713 6.04892 6.08791 6.20788 6.24377 6.42739 6.92858 7.01996 7.47508 8.97240 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023228 B = 0.002194 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.174648 B =12759.624647 C =13054.018513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.181 4.181 3 C 0.124 3.876 4 N -0.531 5.531 5 C 0.121 3.879 6 C -0.260 4.260 7 C 0.153 3.847 8 O -0.302 6.302 9 C 0.066 3.934 10 H 0.093 0.907 11 C -0.138 4.138 12 C 0.042 3.958 13 N -0.528 5.528 14 C 0.096 3.904 15 C -0.099 4.099 16 C -0.099 4.099 17 C 0.044 3.956 18 C -0.534 4.534 19 H 0.051 0.949 20 C 0.011 3.989 21 N -0.917 5.917 22 Si 0.950 3.050 23 H -0.277 1.277 24 H -0.284 1.284 25 H -0.268 1.268 26 C -0.100 4.100 27 C -0.097 4.097 28 C 0.049 3.951 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.184 0.816 33 H 0.180 0.820 34 H 0.154 0.846 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.040 0.960 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.026 0.974 43 H 0.057 0.943 44 H -0.010 1.010 45 H 0.259 0.741 46 H 0.048 0.952 47 H 0.048 0.952 48 H 0.075 0.925 49 H 0.054 0.946 50 H 0.082 0.918 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.639 22.368 11.055 25.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.184 4.184 3 C -0.032 4.032 4 N -0.243 5.243 5 C -0.035 4.035 6 C -0.280 4.280 7 C 0.099 3.901 8 O -0.212 6.212 9 C 0.009 3.991 10 H 0.111 0.889 11 C -0.176 4.176 12 C -0.085 4.085 13 N -0.253 5.253 14 C -0.012 4.012 15 C -0.137 4.137 16 C -0.138 4.138 17 C 0.026 3.974 18 C -0.572 4.572 19 H 0.069 0.931 20 C -0.188 4.188 21 N -0.557 5.557 22 Si 0.776 3.224 23 H -0.203 1.203 24 H -0.210 1.210 25 H -0.193 1.193 26 C -0.139 4.139 27 C -0.135 4.135 28 C -0.079 4.079 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.201 0.799 33 H 0.197 0.803 34 H 0.171 0.829 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.076 0.924 44 H 0.009 0.991 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.094 0.906 49 H 0.073 0.927 50 H 0.100 0.900 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.269 22.847 11.230 25.813 hybrid contribution 0.334 -1.742 -1.434 2.281 sum 4.602 21.105 9.795 23.718 Atomic orbital electron populations 1.20566 0.88492 1.03612 1.02946 1.20666 0.99084 0.91119 1.07504 1.22967 0.89606 0.97579 0.93016 1.67756 1.08799 1.31938 1.15781 1.22957 1.01496 0.86605 0.92454 1.22451 0.93619 1.01733 1.10234 1.19477 0.91502 0.86081 0.93005 1.86090 1.36343 1.12173 1.86643 1.23839 0.94051 0.82952 0.98295 0.88936 1.23186 1.03232 0.95144 0.96045 1.23051 0.93504 0.94981 0.96918 1.63682 1.38021 1.07582 1.16006 1.21696 0.95493 0.91914 0.92111 1.21553 0.97553 0.97996 0.96562 1.21387 0.99653 0.94777 0.97997 1.18633 0.93131 0.92768 0.92869 1.21645 0.98516 1.21824 1.15192 0.93076 1.25742 0.95094 0.98663 0.99264 1.70023 1.06795 1.43963 1.34878 0.85676 0.78563 0.79685 0.78460 1.20284 1.21011 1.19276 1.21491 0.98310 0.97281 0.96777 1.21492 1.00590 0.94068 0.97316 1.22762 1.00802 0.87124 0.97258 0.90839 0.91990 0.89269 0.79944 0.80327 0.82897 0.88325 0.89895 0.89039 0.92265 0.94243 0.93546 0.92730 0.95471 0.92413 0.99140 0.93181 0.93318 0.93325 0.90621 0.92717 0.89985 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 9.84 71.24 0.70 -0.70 16 2 C -0.18 -3.23 5.91 -19.68 -0.12 -3.34 16 3 C 0.12 2.07 10.86 84.62 0.92 2.99 16 4 N -0.53 -10.28 10.36 -196.09 -2.03 -12.31 16 5 C 0.12 1.99 11.17 84.60 0.95 2.93 16 6 C -0.26 -4.34 8.99 22.45 0.20 -4.14 16 7 C 0.15 3.01 6.69 22.76 0.15 3.16 16 8 O -0.30 -6.37 9.04 -90.66 -0.82 -7.19 16 9 C 0.07 1.26 2.74 31.77 0.09 1.34 16 10 H 0.09 1.59 6.31 -2.39 -0.02 1.57 16 11 C -0.14 -2.29 6.65 31.98 0.21 -2.08 16 12 C 0.04 0.84 5.40 86.77 0.47 1.31 16 13 N -0.53 -13.76 5.03 -860.36 -4.33 -18.09 16 14 C 0.10 2.99 1.53 44.92 0.07 3.06 16 15 C -0.10 -3.74 5.07 30.59 0.16 -3.59 16 16 C -0.10 -4.68 4.98 30.59 0.15 -4.52 16 17 C 0.04 2.22 2.10 -11.54 -0.02 2.19 16 18 C -0.53 -29.51 8.56 25.60 0.22 -29.29 16 19 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 20 C 0.01 0.60 5.30 84.66 0.45 1.04 16 21 N -0.92 -53.47 11.32 21.45 0.24 -53.23 16 22 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 26 C -0.10 -4.01 5.15 30.61 0.16 -3.85 16 27 C -0.10 -3.14 5.09 30.61 0.16 -2.98 16 28 C 0.05 1.16 5.92 86.64 0.51 1.68 16 29 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.06 1.02 7.62 -2.39 -0.02 1.00 16 31 H 0.09 0.86 8.09 -2.39 -0.02 0.84 16 32 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 33 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.15 2.00 5.80 -2.91 -0.02 1.98 16 35 H 0.10 1.23 7.81 -2.39 -0.02 1.21 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 1.10 7.57 -2.39 -0.02 1.08 16 39 H 0.04 1.22 8.10 -2.38 -0.02 1.20 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.05 1.90 6.50 -2.39 -0.02 1.89 16 42 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 43 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 44 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 45 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 46 H 0.05 1.89 8.14 -2.38 -0.02 1.88 16 47 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.08 2.00 7.03 -2.39 -0.02 1.99 16 49 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 50 H 0.08 2.10 8.06 -2.39 -0.02 2.08 16 51 H 0.06 1.61 6.35 -2.38 -0.02 1.59 16 Total: -1.00 -64.31 389.30 1.41 -62.90 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.90 Total: 16.86 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 5.42 Total: -34.79 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -6.12 Total: -83.64 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.82 Total: -7.19 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -64.31 1.41 -62.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173341526.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.234 kcal (2) G-P(sol) polarization free energy of solvation -64.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds