Wall clock time and date at job start Tue Mar 31 2020 16:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37996 * 120.45681 * 2 1 4 4 N 1.31950 * 120.82246 * 180.30535 * 3 2 1 5 5 C 1.31977 * 121.86494 * 359.71540 * 4 3 2 6 6 C 1.37956 * 120.81770 * 0.02562 * 5 4 3 7 7 C 1.39242 * 120.45439 * 179.74504 * 2 1 3 8 8 O 1.35734 * 120.84801 * 359.97438 * 7 2 1 9 9 C 1.42897 * 117.00324 * 179.72215 * 8 7 2 10 10 H 1.08997 * 110.87834 * 32.39200 * 9 8 7 11 11 C 1.55145 * 110.99141 * 268.54598 * 9 8 7 12 12 C 1.54314 * 103.01833 * 206.25488 * 11 9 8 13 13 N 1.47441 * 107.23572 * 22.28423 * 12 11 9 14 14 C 1.46896 * 111.00075 * 123.26077 * 13 12 11 15 15 C 1.53001 * 109.47661 * 59.87137 * 14 13 12 16 16 C 1.52996 * 109.47302 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.46975 * 299.99941 * 16 15 14 18 18 C 1.50706 * 109.47103 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99629 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99955 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99908 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47474 * 89.99404 * 22 20 18 24 24 H 1.48504 * 109.47121 * 209.99526 * 22 20 18 25 25 H 1.48499 * 109.47026 * 329.99368 * 22 20 18 26 26 C 1.52997 * 109.47232 * 60.00237 * 17 16 15 27 27 C 1.52996 * 109.46947 * 299.99780 * 26 17 16 28 28 C 1.47843 * 108.56705 * 0.99006 * 13 12 11 29 29 H 1.08994 * 109.47272 * 270.25891 * 1 2 3 30 30 H 1.09008 * 109.46756 * 30.25286 * 1 2 3 31 31 H 1.08997 * 109.47311 * 150.25161 * 1 2 3 32 32 H 1.07999 * 119.58876 * 0.03991 * 3 2 1 33 33 H 1.07997 * 119.59319 * 180.02562 * 5 4 3 34 34 H 1.08004 * 120.44579 * 180.02562 * 6 5 4 35 35 H 1.09005 * 110.70404 * 87.87244 * 11 9 8 36 36 H 1.09000 * 110.70546 * 324.64004 * 11 9 8 37 37 H 1.09004 * 109.88704 * 262.87972 * 12 11 9 38 38 H 1.09003 * 109.89113 * 141.69371 * 12 11 9 39 39 H 1.09001 * 109.46881 * 299.87530 * 14 13 12 40 40 H 1.09001 * 109.46652 * 60.00253 * 15 14 13 41 41 H 1.09004 * 109.47086 * 300.00451 * 15 14 13 42 42 H 1.09000 * 109.46870 * 180.02562 * 16 15 14 43 43 H 1.08992 * 109.47554 * 60.00308 * 16 15 14 44 44 H 1.09001 * 109.47375 * 300.00370 * 17 16 15 45 45 H 0.97003 * 119.99476 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.46832 * 59.99801 * 26 17 16 47 47 H 1.09004 * 109.47261 * 179.97438 * 26 17 16 48 48 H 1.08992 * 109.47554 * 299.99696 * 27 26 17 49 49 H 1.09000 * 109.46870 * 179.97438 * 27 26 17 50 50 H 1.08999 * 110.37369 * 94.73448 * 28 13 12 51 51 H 1.09004 * 110.37287 * 217.07724 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.1895 0.0000 4 7 3.5259 1.1980 -0.0060 5 6 4.2298 0.0816 -0.0067 6 6 3.6046 -1.1482 -0.0016 7 6 2.2127 -1.2003 0.0053 8 8 1.5610 -2.3909 0.0112 9 6 2.3662 -3.5714 0.0102 10 1 3.2980 -3.4064 0.5511 11 6 2.6423 -4.0546 -1.4380 12 6 2.8767 -5.5695 -1.2602 13 7 2.2290 -5.9665 0.0034 14 6 1.2470 -7.0355 -0.2216 15 6 1.9495 -8.2558 -0.8202 16 6 0.9265 -9.3690 -1.0551 17 6 0.2788 -9.7555 0.2760 18 6 -0.7284 -10.8524 0.0448 19 1 -0.8905 -11.2352 -0.9520 20 6 -1.4436 -11.3665 1.1055 21 7 -1.2464 -10.8999 2.3192 22 14 -2.6925 -12.7257 0.8188 23 1 -2.0260 -14.0462 0.9498 24 1 -3.7804 -12.6184 1.8239 25 1 -3.2641 -12.5929 -0.5453 26 6 -0.4238 -8.5353 0.8746 27 6 0.5992 -7.4221 1.1095 28 6 1.5877 -4.7746 0.5984 29 1 -0.3633 0.0046 1.0276 30 1 -0.3633 0.8878 -0.5178 31 1 -0.3634 -0.8922 -0.5099 32 1 1.6672 2.1253 0.0007 33 1 5.3086 0.1313 -0.0113 34 1 4.1865 -2.0580 -0.0018 35 1 3.5320 -3.5718 -1.8424 36 1 1.7786 -3.8706 -2.0769 37 1 3.9459 -5.7758 -1.2096 38 1 2.4308 -6.1140 -2.0926 39 1 0.4789 -6.6842 -0.9106 40 1 2.7175 -8.6071 -0.1312 41 1 2.4107 -7.9805 -1.7688 42 1 1.4272 -10.2384 -1.4812 43 1 0.1588 -9.0175 -1.7443 44 1 1.0466 -10.1070 0.9652 45 1 -1.7494 -11.2619 3.0655 46 1 -1.1916 -8.1837 0.1854 47 1 -0.8857 -8.8107 1.8228 48 1 1.3669 -7.7736 1.7987 49 1 0.0985 -6.5526 1.5356 50 1 0.5378 -4.7249 0.3101 51 1 1.6835 -4.7943 1.6841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173341527.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:58 Heat of formation + Delta-G solvation = -14.126178 kcal Electronic energy + Delta-G solvation = -28415.917146 eV Core-core repulsion = 24700.565912 eV Total energy + Delta-G solvation = -3715.351234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.12563 -39.69746 -38.26963 -36.39950 -33.64667 -32.86788 -31.53855 -30.98634 -30.08065 -28.66061 -27.86283 -27.41327 -24.58244 -23.82835 -22.60770 -22.13918 -21.68031 -20.62901 -20.00637 -18.91491 -18.60110 -17.26593 -16.36150 -16.21516 -15.86596 -15.46876 -15.26941 -14.91886 -14.53626 -14.15096 -13.98885 -13.89454 -13.63569 -13.48002 -13.35568 -12.98636 -12.91286 -12.83638 -12.67508 -12.45605 -11.99156 -11.87229 -11.61134 -11.41184 -11.12696 -11.09032 -11.01110 -10.85607 -10.64604 -10.56706 -10.36259 -10.17303 -9.82338 -9.77706 -9.42572 -9.36314 -8.93933 -8.87748 -8.65419 -8.29191 -8.24448 -5.96599 -4.02606 0.76216 1.04259 2.63161 3.30523 3.37479 3.40460 3.47629 3.99548 4.12941 4.30163 4.32688 4.41171 4.44996 4.47069 4.65489 4.73727 4.85282 5.05983 5.14989 5.18739 5.32158 5.35345 5.38802 5.39675 5.40899 5.51198 5.54994 5.56935 5.67269 5.79654 5.80230 5.85917 5.89409 5.93761 6.12843 6.24352 6.28771 6.36325 6.41417 6.51031 6.65674 6.75904 6.91887 6.93910 7.05307 7.12561 7.22497 7.33083 7.53707 7.69851 7.76765 8.04084 8.17266 8.49023 9.01628 9.61923 11.08925 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025968 B = 0.002180 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.000243 B =12839.316125 C =13443.923844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.172 4.172 3 C 0.129 3.871 4 N -0.510 5.510 5 C 0.128 3.872 6 C -0.259 4.259 7 C 0.174 3.826 8 O -0.293 6.293 9 C 0.069 3.931 10 H 0.093 0.907 11 C -0.162 4.162 12 C 0.042 3.958 13 N -0.520 5.520 14 C 0.086 3.914 15 C -0.107 4.107 16 C -0.108 4.108 17 C 0.049 3.951 18 C -0.513 4.513 19 H 0.053 0.947 20 C 0.060 3.940 21 N -0.890 5.890 22 Si 0.888 3.112 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.108 4.108 27 C -0.108 4.108 28 C 0.054 3.946 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.141 0.859 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.049 0.951 43 H 0.045 0.955 44 H 0.026 0.974 45 H 0.259 0.741 46 H 0.030 0.970 47 H 0.094 0.906 48 H 0.061 0.939 49 H 0.041 0.959 50 H 0.061 0.939 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.639 21.310 -5.135 23.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.175 4.175 3 C -0.027 4.027 4 N -0.221 5.221 5 C -0.028 4.028 6 C -0.280 4.280 7 C 0.120 3.880 8 O -0.203 6.203 9 C 0.012 3.988 10 H 0.111 0.889 11 C -0.201 4.201 12 C -0.086 4.086 13 N -0.246 5.246 14 C -0.021 4.021 15 C -0.145 4.145 16 C -0.146 4.146 17 C 0.030 3.970 18 C -0.551 4.551 19 H 0.071 0.929 20 C -0.140 4.140 21 N -0.529 5.529 22 Si 0.716 3.284 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.146 4.146 27 C -0.146 4.146 28 C -0.074 4.074 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.177 0.823 33 H 0.174 0.826 34 H 0.159 0.841 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.069 0.931 46 H 0.049 0.951 47 H 0.112 0.888 48 H 0.080 0.920 49 H 0.059 0.941 50 H 0.080 0.920 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.150 21.788 -4.618 24.079 hybrid contribution -1.489 -1.357 -0.685 2.128 sum 7.661 20.431 -5.302 22.456 Atomic orbital electron populations 1.20553 0.89511 1.03143 1.02698 1.20391 0.98151 0.91167 1.07767 1.22558 0.89756 0.96705 0.93689 1.67714 1.08071 1.31204 1.15158 1.22538 1.00312 0.86911 0.93050 1.22291 0.93981 1.01102 1.10638 1.19195 0.90750 0.86047 0.91992 1.86091 1.35620 1.11824 1.86797 1.23808 0.94883 0.82931 0.97156 0.88904 1.23291 1.02867 0.97415 0.96488 1.22786 1.00723 0.92683 0.92412 1.63767 1.30511 1.06885 1.23405 1.21955 0.91480 0.90550 0.98137 1.21635 0.98831 0.95048 0.98937 1.21620 0.96597 0.95714 1.00636 1.18652 0.94718 0.92798 0.90795 1.21238 1.21463 1.18640 0.93738 0.92875 1.24967 0.97074 0.96738 0.95257 1.69875 1.41842 1.42275 0.98931 0.86659 0.81273 0.82560 0.77877 1.20764 1.21299 1.20041 1.21611 0.96055 0.93636 1.03347 1.21698 0.99158 0.98938 0.94811 1.22938 0.97427 0.86622 1.00418 0.91020 0.91313 0.90934 0.82282 0.82593 0.84096 0.90423 0.90319 0.90257 0.91617 0.94534 0.91700 0.93732 0.93249 0.93658 0.95593 0.93102 0.95074 0.88818 0.91979 0.94071 0.92032 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 9.84 36.00 0.35 -0.45 16 2 C -0.17 -1.66 5.91 -104.34 -0.62 -2.28 16 3 C 0.13 1.18 10.86 -17.59 -0.19 0.99 16 4 N -0.51 -5.31 10.36 -13.33 -0.14 -5.45 16 5 C 0.13 1.16 11.17 -17.59 -0.20 0.96 16 6 C -0.26 -2.39 9.09 -39.30 -0.36 -2.75 16 7 C 0.17 1.84 6.70 -38.82 -0.26 1.58 16 8 O -0.29 -3.31 9.12 -18.91 -0.17 -3.49 16 9 C 0.07 0.72 2.92 -24.59 -0.07 0.65 16 10 H 0.09 0.88 6.02 -51.93 -0.31 0.57 16 11 C -0.16 -1.60 6.68 -24.91 -0.17 -1.77 16 12 C 0.04 0.47 6.14 -2.84 -0.02 0.46 16 13 N -0.52 -7.17 5.03 -223.29 -1.12 -8.29 16 14 C 0.09 1.41 1.53 -67.71 -0.10 1.31 16 15 C -0.11 -1.81 5.07 -26.73 -0.14 -1.95 16 16 C -0.11 -2.18 5.14 -26.73 -0.14 -2.32 16 17 C 0.05 1.18 2.10 -91.77 -0.19 0.99 16 18 C -0.51 -13.92 8.56 -34.44 -0.29 -14.21 16 19 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 20 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 21 N -0.89 -25.19 11.32 55.43 0.63 -24.57 16 22 Si 0.89 21.19 29.54 -169.99 -5.02 16.16 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C -0.11 -2.48 4.98 -26.73 -0.13 -2.61 16 27 C -0.11 -2.03 5.09 -26.73 -0.14 -2.17 16 28 C 0.05 0.68 5.13 -2.30 -0.01 0.67 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.41 8.10 -51.92 -0.42 -0.01 16 31 H 0.07 0.65 7.62 -51.93 -0.40 0.25 16 32 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.14 1.08 6.03 -52.48 -0.32 0.76 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.78 6.34 -51.93 -0.33 0.45 16 39 H 0.04 0.63 8.10 -51.93 -0.42 0.20 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.04 0.66 6.49 -51.93 -0.34 0.33 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 48 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 49 H 0.04 0.72 7.04 -51.93 -0.37 0.35 16 50 H 0.06 0.84 7.58 -51.93 -0.39 0.44 16 51 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 390.03 15.07 5.88 5.88 Total: -1.00 -29.17 390.03 -11.36 -40.53 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -8.64 Total: 0.55 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -2.76 Total: -21.33 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.63 Total: -38.31 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: -0.17 Total: -3.49 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.17 -11.36 -40.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173341527.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.403 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds