Wall clock time and date at job start Tue Mar 31 2020 16:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37996 * 120.45681 * 2 1 4 4 N 1.31950 * 120.82246 * 180.30535 * 3 2 1 5 5 C 1.31977 * 121.86494 * 359.71540 * 4 3 2 6 6 C 1.37956 * 120.81770 * 0.02562 * 5 4 3 7 7 C 1.39242 * 120.45439 * 179.74504 * 2 1 3 8 8 O 1.35734 * 120.84801 * 359.97438 * 7 2 1 9 9 C 1.42897 * 117.00324 * 179.72215 * 8 7 2 10 10 H 1.08997 * 110.87834 * 32.39200 * 9 8 7 11 11 C 1.55145 * 110.99141 * 268.54598 * 9 8 7 12 12 C 1.54314 * 103.01833 * 206.25488 * 11 9 8 13 13 N 1.47441 * 107.23572 * 22.28423 * 12 11 9 14 14 C 1.46896 * 111.00075 * 123.26077 * 13 12 11 15 15 C 1.53001 * 109.47661 * 59.87137 * 14 13 12 16 16 C 1.52996 * 109.47302 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.46975 * 299.99941 * 16 15 14 18 18 C 1.50706 * 109.47103 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99629 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99955 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99908 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47474 * 89.99404 * 22 20 18 24 24 H 1.48504 * 109.47121 * 209.99526 * 22 20 18 25 25 H 1.48499 * 109.47026 * 329.99368 * 22 20 18 26 26 C 1.52997 * 109.47232 * 60.00237 * 17 16 15 27 27 C 1.52996 * 109.46947 * 299.99780 * 26 17 16 28 28 C 1.47843 * 108.56705 * 0.99006 * 13 12 11 29 29 H 1.08994 * 109.47272 * 270.25891 * 1 2 3 30 30 H 1.09008 * 109.46756 * 30.25286 * 1 2 3 31 31 H 1.08997 * 109.47311 * 150.25161 * 1 2 3 32 32 H 1.07999 * 119.58876 * 0.03991 * 3 2 1 33 33 H 1.07997 * 119.59319 * 180.02562 * 5 4 3 34 34 H 1.08004 * 120.44579 * 180.02562 * 6 5 4 35 35 H 1.09005 * 110.70404 * 87.87244 * 11 9 8 36 36 H 1.09000 * 110.70546 * 324.64004 * 11 9 8 37 37 H 1.09004 * 109.88704 * 262.87972 * 12 11 9 38 38 H 1.09003 * 109.89113 * 141.69371 * 12 11 9 39 39 H 1.09001 * 109.46881 * 299.87530 * 14 13 12 40 40 H 1.09001 * 109.46652 * 60.00253 * 15 14 13 41 41 H 1.09004 * 109.47086 * 300.00451 * 15 14 13 42 42 H 1.09000 * 109.46870 * 180.02562 * 16 15 14 43 43 H 1.08992 * 109.47554 * 60.00308 * 16 15 14 44 44 H 1.09001 * 109.47375 * 300.00370 * 17 16 15 45 45 H 0.97003 * 119.99476 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.46832 * 59.99801 * 26 17 16 47 47 H 1.09004 * 109.47261 * 179.97438 * 26 17 16 48 48 H 1.08992 * 109.47554 * 299.99696 * 27 26 17 49 49 H 1.09000 * 109.46870 * 179.97438 * 27 26 17 50 50 H 1.08999 * 110.37369 * 94.73448 * 28 13 12 51 51 H 1.09004 * 110.37287 * 217.07724 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.1895 0.0000 4 7 3.5259 1.1980 -0.0060 5 6 4.2298 0.0816 -0.0067 6 6 3.6046 -1.1482 -0.0016 7 6 2.2127 -1.2003 0.0053 8 8 1.5610 -2.3909 0.0112 9 6 2.3662 -3.5714 0.0102 10 1 3.2980 -3.4064 0.5511 11 6 2.6423 -4.0546 -1.4380 12 6 2.8767 -5.5695 -1.2602 13 7 2.2290 -5.9665 0.0034 14 6 1.2470 -7.0355 -0.2216 15 6 1.9495 -8.2558 -0.8202 16 6 0.9265 -9.3690 -1.0551 17 6 0.2788 -9.7555 0.2760 18 6 -0.7284 -10.8524 0.0448 19 1 -0.8905 -11.2352 -0.9520 20 6 -1.4436 -11.3665 1.1055 21 7 -1.2464 -10.8999 2.3192 22 14 -2.6925 -12.7257 0.8188 23 1 -2.0260 -14.0462 0.9498 24 1 -3.7804 -12.6184 1.8239 25 1 -3.2641 -12.5929 -0.5453 26 6 -0.4238 -8.5353 0.8746 27 6 0.5992 -7.4221 1.1095 28 6 1.5877 -4.7746 0.5984 29 1 -0.3633 0.0046 1.0276 30 1 -0.3633 0.8878 -0.5178 31 1 -0.3634 -0.8922 -0.5099 32 1 1.6672 2.1253 0.0007 33 1 5.3086 0.1313 -0.0113 34 1 4.1865 -2.0580 -0.0018 35 1 3.5320 -3.5718 -1.8424 36 1 1.7786 -3.8706 -2.0769 37 1 3.9459 -5.7758 -1.2096 38 1 2.4308 -6.1140 -2.0926 39 1 0.4789 -6.6842 -0.9106 40 1 2.7175 -8.6071 -0.1312 41 1 2.4107 -7.9805 -1.7688 42 1 1.4272 -10.2384 -1.4812 43 1 0.1588 -9.0175 -1.7443 44 1 1.0466 -10.1070 0.9652 45 1 -1.7494 -11.2619 3.0655 46 1 -1.1916 -8.1837 0.1854 47 1 -0.8857 -8.8107 1.8228 48 1 1.3669 -7.7736 1.7987 49 1 0.0985 -6.5526 1.5356 50 1 0.5378 -4.7249 0.3101 51 1 1.6835 -4.7943 1.6841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173341527.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:57 Heat of formation + Delta-G solvation = -29.950100 kcal Electronic energy + Delta-G solvation = -28416.603323 eV Core-core repulsion = 24700.565912 eV Total energy + Delta-G solvation = -3716.037411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.87855 -40.71828 -39.31793 -37.73633 -34.85198 -34.18076 -32.48973 -32.17894 -31.57486 -29.79563 -29.25205 -28.07390 -26.33025 -24.72148 -23.53781 -23.29531 -22.90580 -21.67562 -21.35272 -20.45301 -19.48038 -18.39961 -18.04014 -17.08926 -16.89928 -16.54616 -16.22122 -16.04045 -15.80012 -15.28331 -14.93007 -14.84237 -14.79735 -14.64821 -14.46982 -14.25596 -14.12566 -14.03611 -13.62076 -13.36931 -13.21051 -13.04894 -13.03948 -12.87223 -12.55084 -12.47057 -12.25305 -12.21091 -12.05488 -11.86861 -11.83491 -11.68788 -11.52388 -11.20628 -10.72504 -10.51713 -10.48538 -10.35668 -10.09615 -9.66280 -9.34932 -8.06689 -6.20525 0.10424 0.32150 1.40148 1.41065 1.50826 1.83248 2.43518 2.79680 2.97588 3.19742 3.41044 3.48378 3.53875 3.70922 3.78793 3.90865 3.97475 3.99218 4.07630 4.12963 4.28486 4.36699 4.40931 4.49159 4.53653 4.62481 4.68483 4.72134 4.76049 4.78964 4.79780 4.82023 4.83110 4.88130 4.93123 4.96750 5.00038 5.09495 5.16472 5.18235 5.25618 5.32398 5.41377 5.48230 5.60924 5.62426 5.70176 5.94613 6.04098 6.06678 6.20832 6.23678 6.42670 6.92512 7.02796 7.47350 8.97096 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025968 B = 0.002180 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.000243 B =12839.316125 C =13443.923844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.182 4.182 3 C 0.124 3.876 4 N -0.531 5.531 5 C 0.122 3.878 6 C -0.259 4.259 7 C 0.154 3.846 8 O -0.306 6.306 9 C 0.076 3.924 10 H 0.107 0.893 11 C -0.152 4.152 12 C 0.040 3.960 13 N -0.524 5.524 14 C 0.097 3.903 15 C -0.097 4.097 16 C -0.101 4.101 17 C 0.045 3.955 18 C -0.534 4.534 19 H 0.050 0.950 20 C 0.011 3.989 21 N -0.916 5.916 22 Si 0.950 3.050 23 H -0.276 1.276 24 H -0.284 1.284 25 H -0.269 1.269 26 C -0.100 4.100 27 C -0.097 4.097 28 C 0.051 3.949 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.183 0.817 33 H 0.181 0.819 34 H 0.157 0.843 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.033 0.967 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.045 0.955 44 H -0.007 1.007 45 H 0.259 0.741 46 H 0.023 0.977 47 H 0.058 0.942 48 H 0.049 0.951 49 H 0.052 0.948 50 H 0.048 0.952 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.723 22.723 -6.420 25.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.185 4.185 3 C -0.031 4.031 4 N -0.243 5.243 5 C -0.034 4.034 6 C -0.279 4.279 7 C 0.100 3.900 8 O -0.217 6.217 9 C 0.019 3.981 10 H 0.125 0.875 11 C -0.191 4.191 12 C -0.088 4.088 13 N -0.249 5.249 14 C -0.011 4.011 15 C -0.135 4.135 16 C -0.139 4.139 17 C 0.027 3.973 18 C -0.572 4.572 19 H 0.069 0.931 20 C -0.188 4.188 21 N -0.556 5.556 22 Si 0.776 3.224 23 H -0.202 1.202 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.138 4.138 27 C -0.135 4.135 28 C -0.077 4.077 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.200 0.800 33 H 0.198 0.802 34 H 0.175 0.825 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.011 0.989 45 H 0.068 0.932 46 H 0.042 0.958 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.066 0.934 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.246 23.210 -5.914 26.051 hybrid contribution -1.821 -1.767 -0.257 2.550 sum 8.425 21.444 -6.171 23.851 Atomic orbital electron populations 1.20557 0.88698 1.03455 1.02928 1.20644 0.98956 0.91215 1.07714 1.22947 0.89643 0.97496 0.93029 1.67759 1.08720 1.32017 1.15797 1.22982 1.01537 0.86544 0.92327 1.22466 0.93517 1.01879 1.10072 1.19466 0.91593 0.85913 0.93024 1.86066 1.36181 1.12241 1.87184 1.23712 0.94703 0.82109 0.97538 0.87501 1.23228 1.03559 0.96372 0.95920 1.22895 1.01238 0.93666 0.90964 1.63689 1.29401 1.06843 1.24998 1.21672 0.91892 0.91451 0.96064 1.21523 0.97624 0.93963 1.00398 1.21485 0.97262 0.97086 0.98082 1.18630 0.93616 0.92711 0.92386 1.21641 1.22246 1.19655 0.93676 0.93143 1.25739 0.98948 0.98983 0.95086 1.70023 1.42677 1.43326 0.99578 0.85675 0.78951 0.79808 0.77935 1.20212 1.20984 1.19372 1.21389 0.96728 0.94650 1.01081 1.21505 0.97899 0.97729 0.96391 1.22917 0.97024 0.87413 1.00380 0.90815 0.89308 0.92272 0.80020 0.80161 0.82521 0.88158 0.91111 0.88607 0.91743 0.94903 0.92346 0.90643 0.93211 0.93594 0.98907 0.93165 0.95773 0.92315 0.93170 0.92940 0.93362 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 9.84 71.24 0.70 -0.77 16 2 C -0.18 -3.28 5.91 -19.68 -0.12 -3.40 16 3 C 0.12 2.08 10.86 84.62 0.92 2.99 16 4 N -0.53 -10.12 10.36 -196.08 -2.03 -12.15 16 5 C 0.12 1.94 11.17 84.60 0.95 2.88 16 6 C -0.26 -4.19 9.09 22.45 0.20 -3.98 16 7 C 0.15 3.01 6.70 22.76 0.15 3.16 16 8 O -0.31 -6.54 9.12 -90.58 -0.83 -7.36 16 9 C 0.08 1.44 2.92 31.98 0.09 1.54 16 10 H 0.11 1.73 6.02 -2.39 -0.01 1.72 16 11 C -0.15 -2.60 6.68 31.78 0.21 -2.38 16 12 C 0.04 0.79 6.14 86.65 0.53 1.32 16 13 N -0.52 -13.56 5.03 -860.37 -4.33 -17.88 16 14 C 0.10 3.11 1.53 44.92 0.07 3.18 16 15 C -0.10 -3.18 5.07 30.59 0.16 -3.03 16 16 C -0.10 -4.08 5.14 30.59 0.16 -3.92 16 17 C 0.04 2.25 2.10 -11.54 -0.02 2.23 16 18 C -0.53 -29.68 8.56 25.60 0.22 -29.46 16 19 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 20 C 0.01 0.60 5.30 84.65 0.45 1.05 16 21 N -0.92 -53.47 11.32 21.45 0.24 -53.23 16 22 Si 0.95 43.99 29.54 68.60 2.03 46.02 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 C -0.10 -4.74 4.98 30.59 0.15 -4.59 16 27 C -0.10 -3.71 5.09 30.59 0.16 -3.56 16 28 C 0.05 1.22 5.13 86.77 0.45 1.66 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 0.91 8.10 -2.38 -0.02 0.89 16 31 H 0.06 1.03 7.62 -2.39 -0.02 1.01 16 32 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.16 1.92 6.03 -2.91 -0.02 1.90 16 35 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.06 1.33 6.34 -2.39 -0.02 1.31 16 39 H 0.03 1.09 8.10 -2.39 -0.02 1.07 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.08 2.03 6.49 -2.38 -0.02 2.02 16 42 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 45 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 46 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.06 3.20 6.07 -2.38 -0.01 3.18 16 48 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.05 1.86 7.04 -2.39 -0.02 1.84 16 50 H 0.05 1.29 7.58 -2.39 -0.02 1.27 16 51 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -64.39 390.03 1.40 -62.99 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.90 Total: 16.69 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 5.42 Total: -35.08 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -6.12 Total: -83.26 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.83 Total: -7.36 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -64.39 1.40 -62.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173341527.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.036 kcal (2) G-P(sol) polarization free energy of solvation -64.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds