Wall clock time and date at job start Tue Mar 31 2020 16:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47218 * 2 1 4 4 C 1.38119 * 120.03627 * 264.72796 * 3 2 1 5 5 C 1.38278 * 120.06868 * 179.70160 * 4 3 2 6 6 C 1.38283 * 120.14187 * 0.59155 * 5 4 3 7 7 C 1.38117 * 120.06876 * 359.68715 * 6 5 4 8 8 C 1.50701 * 120.03763 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46654 * 298.15716 * 8 7 6 10 10 C 1.38866 * 119.92790 * 0.02562 * 7 6 5 11 11 N 1.39948 * 120.06790 * 180.02562 * 10 7 6 12 12 C 1.34778 * 120.00265 * 312.05455 * 11 10 7 13 13 O 1.21587 * 119.99443 * 357.45038 * 12 11 10 14 14 N 1.34772 * 120.00409 * 177.44819 * 12 11 10 15 15 C 1.46495 * 120.00152 * 179.97438 * 14 12 11 16 16 H 1.08997 * 109.41200 * 35.00487 * 15 14 12 17 17 C 1.52962 * 109.41361 * 154.86162 * 15 14 12 18 18 C 1.53225 * 109.40517 * 183.70686 * 17 15 14 19 19 C 1.51269 * 108.53568 * 305.37143 * 18 17 15 20 20 C 1.37879 * 120.84947 * 231.37217 * 19 18 17 21 21 N 1.31518 * 120.00182 * 7.78622 * 20 19 18 22 22 Si 1.86808 * 120.00003 * 187.78976 * 20 19 18 23 23 H 1.48492 * 109.47029 * 5.85858 * 22 20 19 24 24 H 1.48498 * 109.47073 * 125.85870 * 22 20 19 25 25 H 1.48493 * 109.46935 * 245.85867 * 22 20 19 26 26 C 1.51266 * 118.30281 * 51.34725 * 19 18 17 27 27 C 1.52962 * 109.41447 * 275.14296 * 15 14 12 28 28 H 1.08990 * 109.47081 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47138 * 59.99616 * 1 2 3 30 30 H 1.09001 * 109.46932 * 299.99870 * 1 2 3 31 31 H 1.09000 * 109.47579 * 119.99891 * 2 1 3 32 32 H 1.09001 * 109.46932 * 240.00130 * 2 1 3 33 33 H 1.07995 * 119.96173 * 359.97438 * 4 3 2 34 34 H 1.07994 * 119.93004 * 180.30139 * 5 4 3 35 35 H 1.07999 * 119.96819 * 179.70016 * 6 5 4 36 36 H 1.08994 * 109.47115 * 58.15574 * 8 7 6 37 37 H 1.09002 * 109.47373 * 178.16189 * 8 7 6 38 38 H 1.08998 * 109.47591 * 307.40411 * 9 8 7 39 39 H 1.09001 * 109.47099 * 67.40546 * 9 8 7 40 40 H 1.09001 * 109.47297 * 187.40145 * 9 8 7 41 41 H 0.97006 * 120.00192 * 132.05838 * 11 10 7 42 42 H 0.97007 * 119.99739 * 0.02562 * 14 12 11 43 43 H 1.09000 * 109.47821 * 303.68689 * 17 15 14 44 44 H 1.08997 * 109.48320 * 63.72387 * 17 15 14 45 45 H 1.09003 * 109.63209 * 65.08561 * 18 17 15 46 46 H 1.09001 * 109.62594 * 185.65797 * 18 17 15 47 47 H 0.96997 * 120.00265 * 180.02562 * 21 20 19 48 48 H 1.09004 * 109.62833 * 68.36520 * 26 19 18 49 49 H 1.08996 * 109.63003 * 188.74766 * 26 19 18 50 50 H 1.08994 * 109.48080 * 296.27571 * 27 15 14 51 51 H 1.08996 * 109.48024 * 56.31709 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3664 2.0360 -1.1906 5 6 2.8216 3.3417 -1.1920 6 6 2.9554 4.0317 -0.0011 7 6 2.6285 3.4202 1.1934 8 6 2.7742 4.1729 2.4908 9 6 4.2422 4.5502 2.6995 10 6 2.1655 2.1110 1.1976 11 7 1.8329 1.4888 2.4062 12 6 2.6804 1.5519 3.4523 13 8 3.7541 2.1096 3.3320 14 7 2.3377 0.9970 4.6317 15 6 3.2591 1.0652 5.7686 16 1 3.7946 2.0142 5.7444 17 6 2.4662 0.9619 7.0726 18 6 3.4184 1.1260 8.2618 19 6 4.5334 0.1125 8.1284 20 6 4.8584 -0.7231 9.1758 21 7 4.1023 -0.7539 10.2515 22 14 6.3728 -1.8115 9.0672 23 1 7.1257 -1.4898 7.8284 24 1 7.2394 -1.5731 10.2492 25 1 5.9569 -3.2367 9.0377 26 6 5.2825 0.0389 6.8162 27 6 4.2616 -0.0868 5.6804 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.2678 1.4981 -2.1219 34 1 3.0775 3.8222 -2.1247 35 1 3.3158 5.0497 -0.0050 36 1 2.1679 5.0780 2.4558 37 1 2.4401 3.5434 3.3156 38 1 4.8635 3.6597 2.6034 39 1 4.5392 5.2830 1.9492 40 1 4.3699 4.9767 3.6944 41 1 0.9924 1.0119 2.4911 42 1 1.4812 0.5518 4.7276 43 1 1.7101 1.7465 7.1013 44 1 1.9812 -0.0127 7.1270 45 1 3.8366 2.1327 8.2599 46 1 2.8762 0.9535 9.1915 47 1 4.3310 -1.3415 10.9885 48 1 5.8731 0.9449 6.6804 49 1 5.9404 -0.8301 6.8185 50 1 3.7332 -1.0360 5.7684 51 1 4.7788 -0.0459 4.7218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189777526.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:38 Heat of formation + Delta-G solvation = -18.236001 kcal Electronic energy + Delta-G solvation = -29364.519817 eV Core-core repulsion = 25648.990368 eV Total energy + Delta-G solvation = -3715.529449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.99229 -38.98738 -36.90846 -35.30394 -34.32423 -33.72237 -32.58831 -31.45990 -29.66830 -29.05143 -28.78977 -27.00467 -24.33293 -23.82269 -22.52502 -21.60404 -21.36671 -20.55656 -20.06898 -19.50193 -18.22830 -17.47482 -16.36993 -15.96921 -15.68366 -15.01372 -14.82442 -14.47522 -14.40116 -14.15025 -13.81975 -13.79719 -13.47561 -13.24694 -12.98341 -12.73878 -12.48252 -12.29398 -12.23061 -12.08070 -11.94882 -11.66493 -11.58316 -11.27356 -11.13283 -11.00396 -10.90926 -10.73201 -10.60287 -10.47599 -10.17653 -9.97254 -9.88660 -9.81509 -9.44940 -9.00516 -8.85942 -8.60816 -8.47654 -8.32703 -8.04070 -6.11791 -4.00556 1.27488 1.35618 2.84737 3.26273 3.36408 3.37259 3.39649 3.75635 4.38654 4.40658 4.57288 4.67899 4.90566 5.00263 5.11819 5.16351 5.24549 5.25673 5.41425 5.49368 5.52028 5.68165 5.69139 5.72176 5.78345 5.80410 5.90414 5.97795 6.07233 6.18443 6.20982 6.24350 6.41194 6.44977 6.47935 6.49615 6.56725 6.61990 6.71252 6.74958 6.81772 6.91179 6.97821 7.07234 7.10168 7.19210 7.32315 7.46125 7.66309 7.70561 7.80028 8.20335 8.38038 8.86148 8.96091 9.54447 10.97601 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.002988 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.493756 B = 9367.594002 C = 9855.904433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.101 4.101 4 C -0.112 4.112 5 C -0.130 4.130 6 C -0.110 4.110 7 C -0.067 4.067 8 C -0.077 4.077 9 C -0.130 4.130 10 C 0.172 3.828 11 N -0.695 5.695 12 C 0.695 3.305 13 O -0.563 6.563 14 N -0.736 5.736 15 C 0.173 3.827 16 H 0.079 0.921 17 C -0.113 4.113 18 C 0.013 3.987 19 C -0.488 4.488 20 C 0.076 3.924 21 N -0.889 5.889 22 Si 0.881 3.119 23 H -0.258 1.258 24 H -0.286 1.286 25 H -0.284 1.284 26 C -0.019 4.019 27 C -0.112 4.112 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.036 0.964 40 H 0.048 0.952 41 H 0.400 0.600 42 H 0.389 0.611 43 H 0.034 0.966 44 H 0.054 0.946 45 H 0.006 0.994 46 H 0.061 0.939 47 H 0.263 0.737 48 H 0.017 0.983 49 H 0.037 0.963 50 H 0.049 0.951 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.354 4.845 -20.750 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.103 4.103 4 C -0.131 4.131 5 C -0.148 4.148 6 C -0.128 4.128 7 C -0.069 4.069 8 C -0.114 4.114 9 C -0.187 4.187 10 C 0.077 3.923 11 N -0.346 5.346 12 C 0.397 3.603 13 O -0.439 6.439 14 N -0.389 5.389 15 C 0.070 3.930 16 H 0.097 0.903 17 C -0.152 4.152 18 C -0.025 4.025 19 C -0.507 4.507 20 C -0.126 4.126 21 N -0.527 5.527 22 Si 0.709 3.291 23 H -0.182 1.182 24 H -0.212 1.212 25 H -0.210 1.210 26 C -0.057 4.057 27 C -0.151 4.151 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.236 0.764 42 H 0.222 0.778 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.024 0.976 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.035 0.965 49 H 0.055 0.945 50 H 0.068 0.932 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.370 5.257 -20.555 22.460 hybrid contribution -0.091 -1.163 0.053 1.167 sum -7.462 4.095 -20.502 22.198 Atomic orbital electron populations 1.21748 0.94834 1.01751 1.01989 1.20469 0.95895 0.92656 1.03136 1.19759 1.02385 0.95890 0.92314 1.20773 1.00399 0.95148 0.96755 1.21032 1.01046 0.94888 0.97859 1.20850 1.00392 1.00044 0.91549 1.19904 0.98812 0.92311 0.95912 1.20632 0.98147 0.98167 0.94457 1.21626 0.95756 1.01362 0.99917 1.17066 1.00460 0.90653 0.84113 1.42685 1.22777 1.58416 1.10689 1.15999 0.84182 0.79842 0.80299 1.90984 1.22498 1.47692 1.82731 1.45692 1.22274 1.60275 1.10675 1.20953 0.89530 0.99837 0.82660 0.90338 1.21925 0.98110 0.99676 0.95441 1.19346 0.93949 0.95107 0.94089 1.20055 1.16057 1.18329 0.96301 1.24834 0.96316 0.96323 0.95123 1.69855 1.37272 1.38786 1.06796 0.86749 0.83996 0.80273 0.78120 1.18246 1.21201 1.20984 1.19841 0.94522 0.97520 0.93795 1.21900 0.97675 0.97139 0.98412 0.92244 0.92431 0.92954 0.90951 0.90924 0.86148 0.86262 0.86083 0.92854 0.90352 0.90372 0.94462 0.93289 0.76389 0.77817 0.94721 0.92742 0.97601 0.92093 0.92681 0.96477 0.94473 0.93248 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.87 37.16 0.37 -0.69 16 2 C -0.08 -0.76 5.58 -27.88 -0.16 -0.91 16 3 C -0.10 -1.12 5.15 -104.43 -0.54 -1.66 16 4 C -0.11 -1.14 9.67 -39.61 -0.38 -1.52 16 5 C -0.13 -1.32 10.04 -39.55 -0.40 -1.72 16 6 C -0.11 -1.27 9.32 -39.61 -0.37 -1.64 16 7 C -0.07 -0.90 4.90 -104.43 -0.51 -1.41 16 8 C -0.08 -1.09 5.21 -27.88 -0.15 -1.23 16 9 C -0.13 -1.90 8.82 37.16 0.33 -1.57 16 10 C 0.17 2.22 5.95 -83.69 -0.50 1.72 16 11 N -0.70 -8.58 4.27 -14.22 -0.06 -8.64 16 12 C 0.70 10.87 6.47 -86.92 -0.56 10.31 16 13 O -0.56 -10.59 10.43 5.29 0.06 -10.54 16 14 N -0.74 -11.19 5.08 -58.72 -0.30 -11.49 16 15 C 0.17 3.29 2.35 -67.97 -0.16 3.13 16 16 H 0.08 1.66 7.57 -51.93 -0.39 1.27 16 17 C -0.11 -2.25 5.40 -26.63 -0.14 -2.39 16 18 C 0.01 0.31 5.99 -27.49 -0.16 0.15 16 19 C -0.49 -12.66 5.50 -98.92 -0.54 -13.21 16 20 C 0.08 2.07 5.45 -17.82 -0.10 1.97 16 21 N -0.89 -25.16 12.74 55.43 0.71 -24.46 16 22 Si 0.88 20.85 27.79 -169.99 -4.72 16.13 16 23 H -0.26 -5.93 5.79 56.52 0.33 -5.60 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C -0.02 -0.44 5.55 -27.48 -0.15 -0.59 16 27 C -0.11 -2.34 5.50 -26.63 -0.15 -2.49 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.37 7.23 -51.93 -0.38 0.00 16 31 H 0.07 0.72 7.62 -51.93 -0.40 0.32 16 32 H 0.07 0.58 8.05 -51.93 -0.42 0.17 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.12 1.22 7.79 -52.49 -0.41 0.81 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 1.24 4.47 -51.93 -0.23 1.01 16 38 H 0.08 1.36 6.29 -51.93 -0.33 1.03 16 39 H 0.04 0.46 7.77 -51.93 -0.40 0.06 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.40 3.81 7.64 -40.82 -0.31 3.50 16 42 H 0.39 4.80 8.62 -40.82 -0.35 4.45 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 46 H 0.06 1.61 7.06 -51.93 -0.37 1.24 16 47 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.04 0.88 4.59 -51.93 -0.24 0.64 16 50 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 387.59 15.07 5.84 5.84 Total: -1.00 -29.68 387.59 -11.26 -40.94 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -8.50 Total: 5.97 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -4.27 Total: -13.75 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.35 Total: -44.59 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.06 Total: -10.54 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.72 Total: 16.13 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.68 -11.26 -40.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189777526.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.700 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds