Wall clock time and date at job start Tue Mar 31 2020 16:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47218 * 2 1 4 4 C 1.38119 * 120.03627 * 264.72796 * 3 2 1 5 5 C 1.38278 * 120.06868 * 179.70160 * 4 3 2 6 6 C 1.38283 * 120.14187 * 0.59155 * 5 4 3 7 7 C 1.38117 * 120.06876 * 359.68715 * 6 5 4 8 8 C 1.50701 * 120.03763 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46654 * 298.15716 * 8 7 6 10 10 C 1.38866 * 119.92790 * 0.02562 * 7 6 5 11 11 N 1.39948 * 120.06790 * 180.02562 * 10 7 6 12 12 C 1.34778 * 120.00265 * 312.05455 * 11 10 7 13 13 O 1.21587 * 119.99443 * 357.45038 * 12 11 10 14 14 N 1.34772 * 120.00409 * 177.44819 * 12 11 10 15 15 C 1.46495 * 120.00152 * 179.97438 * 14 12 11 16 16 H 1.08997 * 109.41200 * 35.00487 * 15 14 12 17 17 C 1.52962 * 109.41361 * 154.86162 * 15 14 12 18 18 C 1.53225 * 109.40517 * 183.70686 * 17 15 14 19 19 C 1.51269 * 108.53568 * 305.37143 * 18 17 15 20 20 C 1.37879 * 120.84947 * 231.37217 * 19 18 17 21 21 N 1.31518 * 120.00182 * 7.78622 * 20 19 18 22 22 Si 1.86808 * 120.00003 * 187.78976 * 20 19 18 23 23 H 1.48492 * 109.47029 * 5.85858 * 22 20 19 24 24 H 1.48498 * 109.47073 * 125.85870 * 22 20 19 25 25 H 1.48493 * 109.46935 * 245.85867 * 22 20 19 26 26 C 1.51266 * 118.30281 * 51.34725 * 19 18 17 27 27 C 1.52962 * 109.41447 * 275.14296 * 15 14 12 28 28 H 1.08990 * 109.47081 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47138 * 59.99616 * 1 2 3 30 30 H 1.09001 * 109.46932 * 299.99870 * 1 2 3 31 31 H 1.09000 * 109.47579 * 119.99891 * 2 1 3 32 32 H 1.09001 * 109.46932 * 240.00130 * 2 1 3 33 33 H 1.07995 * 119.96173 * 359.97438 * 4 3 2 34 34 H 1.07994 * 119.93004 * 180.30139 * 5 4 3 35 35 H 1.07999 * 119.96819 * 179.70016 * 6 5 4 36 36 H 1.08994 * 109.47115 * 58.15574 * 8 7 6 37 37 H 1.09002 * 109.47373 * 178.16189 * 8 7 6 38 38 H 1.08998 * 109.47591 * 307.40411 * 9 8 7 39 39 H 1.09001 * 109.47099 * 67.40546 * 9 8 7 40 40 H 1.09001 * 109.47297 * 187.40145 * 9 8 7 41 41 H 0.97006 * 120.00192 * 132.05838 * 11 10 7 42 42 H 0.97007 * 119.99739 * 0.02562 * 14 12 11 43 43 H 1.09000 * 109.47821 * 303.68689 * 17 15 14 44 44 H 1.08997 * 109.48320 * 63.72387 * 17 15 14 45 45 H 1.09003 * 109.63209 * 65.08561 * 18 17 15 46 46 H 1.09001 * 109.62594 * 185.65797 * 18 17 15 47 47 H 0.96997 * 120.00265 * 180.02562 * 21 20 19 48 48 H 1.09004 * 109.62833 * 68.36520 * 26 19 18 49 49 H 1.08996 * 109.63003 * 188.74766 * 26 19 18 50 50 H 1.08994 * 109.48080 * 296.27571 * 27 15 14 51 51 H 1.08996 * 109.48024 * 56.31709 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3664 2.0360 -1.1906 5 6 2.8216 3.3417 -1.1920 6 6 2.9554 4.0317 -0.0011 7 6 2.6285 3.4202 1.1934 8 6 2.7742 4.1729 2.4908 9 6 4.2422 4.5502 2.6995 10 6 2.1655 2.1110 1.1976 11 7 1.8329 1.4888 2.4062 12 6 2.6804 1.5519 3.4523 13 8 3.7541 2.1096 3.3320 14 7 2.3377 0.9970 4.6317 15 6 3.2591 1.0652 5.7686 16 1 3.7946 2.0142 5.7444 17 6 2.4662 0.9619 7.0726 18 6 3.4184 1.1260 8.2618 19 6 4.5334 0.1125 8.1284 20 6 4.8584 -0.7231 9.1758 21 7 4.1023 -0.7539 10.2515 22 14 6.3728 -1.8115 9.0672 23 1 7.1257 -1.4898 7.8284 24 1 7.2394 -1.5731 10.2492 25 1 5.9569 -3.2367 9.0377 26 6 5.2825 0.0389 6.8162 27 6 4.2616 -0.0868 5.6804 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.2678 1.4981 -2.1219 34 1 3.0775 3.8222 -2.1247 35 1 3.3158 5.0497 -0.0050 36 1 2.1679 5.0780 2.4558 37 1 2.4401 3.5434 3.3156 38 1 4.8635 3.6597 2.6034 39 1 4.5392 5.2830 1.9492 40 1 4.3699 4.9767 3.6944 41 1 0.9924 1.0119 2.4911 42 1 1.4812 0.5518 4.7276 43 1 1.7101 1.7465 7.1013 44 1 1.9812 -0.0127 7.1270 45 1 3.8366 2.1327 8.2599 46 1 2.8762 0.9535 9.1915 47 1 4.3310 -1.3415 10.9885 48 1 5.8731 0.9449 6.6804 49 1 5.9404 -0.8301 6.8185 50 1 3.7332 -1.0360 5.7684 51 1 4.7788 -0.0459 4.7218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189777526.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:37 Heat of formation + Delta-G solvation = -33.636156 kcal Electronic energy + Delta-G solvation = -29365.187618 eV Core-core repulsion = 25648.990368 eV Total energy + Delta-G solvation = -3716.197250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.06317 -40.10881 -38.48272 -36.22306 -35.52334 -35.16335 -33.70176 -33.06590 -31.46996 -30.06261 -29.72290 -28.63798 -25.25302 -24.82563 -23.98168 -23.32031 -22.62161 -21.66042 -21.23950 -20.98680 -19.44168 -18.54348 -17.94854 -17.30526 -16.74359 -16.37078 -16.15758 -15.83697 -15.63414 -15.11227 -14.98154 -14.80670 -14.66319 -14.47233 -14.36696 -14.16658 -13.94376 -13.83148 -13.46394 -13.40384 -12.98251 -12.83103 -12.77829 -12.75633 -12.53067 -12.41829 -12.09651 -11.90181 -11.82960 -11.77944 -11.60676 -11.57116 -11.36593 -11.20297 -10.94178 -10.76569 -10.66741 -10.50044 -9.82958 -9.45258 -9.02100 -8.17223 -6.09314 0.41176 0.49602 1.36781 1.43036 1.51520 1.70256 2.19106 2.41765 2.87630 3.08793 3.30666 3.78992 3.88748 4.06013 4.09152 4.23441 4.27852 4.38387 4.46414 4.49653 4.53088 4.55887 4.59785 4.67037 4.73090 4.74597 4.86073 4.88101 4.99046 5.00292 5.08495 5.09662 5.12248 5.14930 5.18969 5.23559 5.27119 5.28596 5.40775 5.47168 5.54347 5.57255 5.59003 5.63045 5.69619 5.73797 5.76038 5.79244 5.84926 6.07314 6.20176 6.36476 6.95432 7.09467 7.47917 7.66725 8.93233 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.002988 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.493756 B = 9367.594002 C = 9855.904433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.103 4.103 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.120 4.120 7 C -0.089 4.089 8 C -0.073 4.073 9 C -0.122 4.122 10 C 0.146 3.854 11 N -0.678 5.678 12 C 0.696 3.304 13 O -0.595 6.595 14 N -0.727 5.727 15 C 0.190 3.810 16 H 0.056 0.944 17 C -0.099 4.099 18 C 0.008 3.992 19 C -0.498 4.498 20 C 0.027 3.973 21 N -0.926 5.926 22 Si 0.931 3.069 23 H -0.248 1.248 24 H -0.288 1.288 25 H -0.280 1.280 26 C -0.020 4.020 27 C -0.103 4.103 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.132 0.868 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.038 0.962 41 H 0.414 0.586 42 H 0.406 0.594 43 H 0.057 0.943 44 H 0.055 0.945 45 H -0.002 1.002 46 H 0.034 0.966 47 H 0.263 0.737 48 H 0.009 0.991 49 H 0.036 0.964 50 H 0.053 0.947 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.212 4.438 -23.850 25.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.106 4.106 4 C -0.133 4.133 5 C -0.144 4.144 6 C -0.139 4.139 7 C -0.092 4.092 8 C -0.110 4.110 9 C -0.179 4.179 10 C 0.052 3.948 11 N -0.329 5.329 12 C 0.397 3.603 13 O -0.474 6.474 14 N -0.381 5.381 15 C 0.085 3.915 16 H 0.075 0.925 17 C -0.137 4.137 18 C -0.030 4.030 19 C -0.517 4.517 20 C -0.172 4.172 21 N -0.566 5.566 22 Si 0.758 3.242 23 H -0.172 1.172 24 H -0.214 1.214 25 H -0.206 1.206 26 C -0.058 4.058 27 C -0.142 4.142 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.150 0.850 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.252 0.748 42 H 0.242 0.758 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.016 0.984 46 H 0.052 0.948 47 H 0.072 0.928 48 H 0.028 0.972 49 H 0.055 0.945 50 H 0.071 0.929 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.274 4.840 -23.697 25.562 hybrid contribution 0.166 -0.950 0.928 1.339 sum -8.108 3.890 -22.768 24.480 Atomic orbital electron populations 1.21724 0.93439 1.02581 1.02188 1.20500 0.97035 0.91287 1.03155 1.20040 1.01777 0.96783 0.91963 1.21155 0.99353 0.95321 0.97432 1.21390 0.99699 0.94940 0.98401 1.21063 1.00499 1.00805 0.91525 1.19997 1.00182 0.92916 0.96063 1.20527 0.97556 0.98414 0.94537 1.21520 0.95989 1.00369 0.99997 1.17307 1.01990 0.90955 0.84583 1.42394 1.22686 1.57963 1.09857 1.16062 0.84133 0.79374 0.80731 1.90983 1.24154 1.48971 1.83292 1.45251 1.22397 1.60698 1.09773 1.20447 0.89485 0.97979 0.83547 0.92528 1.21680 0.97534 1.00567 0.93949 1.19306 0.94434 0.94342 0.94875 1.20576 1.16260 1.17908 0.96999 1.25536 0.98628 0.98035 0.95011 1.69967 1.38925 1.40100 1.07606 0.85932 0.81221 0.78850 0.78242 1.17188 1.21410 1.20562 1.19836 0.95021 0.97085 0.93832 1.21763 0.97397 0.97998 0.97076 0.91105 0.91960 0.93051 0.92123 0.89716 0.83500 0.83528 0.84965 0.91714 0.92408 0.93297 0.92482 0.94241 0.74766 0.75823 0.92432 0.92584 0.98370 0.94759 0.92777 0.97228 0.94521 0.92854 0.94478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.87 71.98 0.71 -0.96 16 2 C -0.08 -1.27 5.58 29.85 0.17 -1.11 16 3 C -0.10 -2.06 5.15 -19.74 -0.10 -2.16 16 4 C -0.11 -1.96 9.67 22.25 0.22 -1.74 16 5 C -0.13 -2.19 10.04 22.29 0.22 -1.97 16 6 C -0.12 -2.57 9.32 22.25 0.21 -2.37 16 7 C -0.09 -2.31 4.90 -19.74 -0.10 -2.41 16 8 C -0.07 -2.05 5.21 29.85 0.16 -1.90 16 9 C -0.12 -3.60 8.82 71.98 0.64 -2.97 16 10 C 0.15 3.58 5.95 38.15 0.23 3.81 16 11 N -0.68 -15.96 4.27 -317.18 -1.35 -17.32 16 12 C 0.70 21.33 6.47 179.06 1.16 22.49 16 13 O -0.60 -22.61 10.43 -3.99 -0.04 -22.65 16 14 N -0.73 -21.30 5.08 -457.95 -2.32 -23.62 16 15 C 0.19 7.15 2.35 44.97 0.11 7.25 16 16 H 0.06 2.42 7.57 -2.39 -0.02 2.40 16 17 C -0.10 -3.88 5.40 30.66 0.17 -3.71 16 18 C 0.01 0.42 5.99 30.10 0.18 0.60 16 19 C -0.50 -26.11 5.50 -16.17 -0.09 -26.20 16 20 C 0.03 1.45 5.45 84.65 0.46 1.91 16 21 N -0.93 -53.55 12.74 21.45 0.27 -53.27 16 22 Si 0.93 43.01 27.79 68.60 1.91 44.92 16 23 H -0.25 -10.91 5.79 99.48 0.58 -10.34 16 24 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 26 C -0.02 -0.93 5.55 30.11 0.17 -0.76 16 27 C -0.10 -4.24 5.50 30.66 0.17 -4.07 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.61 7.23 -2.39 -0.02 0.59 16 31 H 0.06 1.09 7.62 -2.39 -0.02 1.07 16 32 H 0.08 1.10 8.05 -2.39 -0.02 1.08 16 33 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.13 2.41 7.79 -2.91 -0.02 2.38 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.84 4.47 -2.39 -0.01 1.83 16 38 H 0.05 1.74 6.29 -2.39 -0.02 1.73 16 39 H 0.06 1.40 7.77 -2.39 -0.02 1.38 16 40 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.41 7.19 7.64 -92.70 -0.71 6.48 16 42 H 0.41 9.23 8.62 -92.70 -0.80 8.43 16 43 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 44 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.00 -0.11 8.14 -2.39 -0.02 -0.12 16 46 H 0.03 1.85 7.06 -2.39 -0.02 1.83 16 47 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 48 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 49 H 0.04 1.71 4.59 -2.39 -0.01 1.70 16 50 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 51 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -65.41 387.59 2.42 -62.99 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: -0.70 Total: 25.21 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 4.66 Total: -16.26 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -3.41 Total: -94.21 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.04 Total: -22.65 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.91 Total: 44.92 kcal Total: -65.41 2.42 -62.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189777526.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.354 kcal (2) G-P(sol) polarization free energy of solvation -65.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds