Wall clock time and date at job start Tue Mar 31 2020 16:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47186 * 2 1 4 4 C 1.38256 * 120.00110 * 265.00095 * 3 2 1 5 5 C 1.38215 * 119.99734 * 180.02562 * 4 3 2 6 6 C 1.38252 * 120.00294 * 359.97438 * 5 4 3 7 7 C 1.38221 * 120.00067 * 359.97438 * 6 5 4 8 8 C 1.38218 * 119.99798 * 84.90571 * 3 2 1 9 9 C 1.50701 * 120.00045 * 0.04584 * 8 3 2 10 10 C 1.50708 * 109.46905 * 84.88575 * 9 8 3 11 11 O 1.21277 * 120.00137 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99648 * 179.97438 * 10 9 8 13 13 C 1.46928 * 120.63404 * 359.72540 * 12 10 9 14 14 C 1.53619 * 108.54413 * 126.36546 * 13 12 10 15 15 C 1.53045 * 109.24274 * 54.85680 * 14 13 12 16 16 C 1.53002 * 109.45876 * 178.48684 * 15 14 13 17 17 N 1.46493 * 109.47503 * 295.07079 * 16 15 14 18 18 C 1.36933 * 120.00041 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00289 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00263 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99543 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00366 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47004 * 60.00518 * 22 20 18 24 24 H 1.48494 * 109.47189 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47261 * 300.00767 * 22 20 18 26 26 C 1.53034 * 109.53691 * 298.51173 * 15 14 13 27 27 C 1.46930 * 120.62872 * 179.97438 * 12 10 9 28 28 H 1.09002 * 109.46660 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47154 * 300.00087 * 1 2 3 30 30 H 1.09007 * 109.46621 * 60.00179 * 1 2 3 31 31 H 1.08995 * 109.47402 * 240.00371 * 2 1 3 32 32 H 1.08996 * 109.47056 * 119.99667 * 2 1 3 33 33 H 1.07995 * 120.00047 * 0.26995 * 4 3 2 34 34 H 1.08000 * 119.99286 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.00307 * 179.97438 * 6 5 4 36 36 H 1.07999 * 120.00168 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.47462 * 204.88377 * 9 8 3 38 38 H 1.09002 * 109.47103 * 324.89351 * 9 8 3 39 39 H 1.08995 * 109.58398 * 246.19897 * 13 12 10 40 40 H 1.08998 * 109.58508 * 6.62299 * 13 12 10 41 41 H 1.09005 * 109.63679 * 294.86255 * 14 13 12 42 42 H 1.09002 * 109.45796 * 174.74029 * 14 13 12 43 43 H 1.08998 * 109.44749 * 58.52732 * 15 14 13 44 44 H 1.09001 * 109.47180 * 55.07130 * 16 15 14 45 45 H 1.08997 * 109.46665 * 175.06571 * 16 15 14 46 46 H 0.97000 * 120.00278 * 359.97438 * 17 16 15 47 47 H 0.97006 * 119.99904 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.49994 * 301.41102 * 26 15 14 49 49 H 1.09000 * 109.52373 * 181.33672 * 26 15 14 50 50 H 1.08995 * 109.58751 * 353.38274 * 27 12 10 51 51 H 1.09005 * 109.58099 * 113.65690 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3612 2.0379 -1.1928 5 6 2.8224 3.3408 -1.1926 6 6 2.9545 4.0273 0.0001 7 6 2.6247 3.4108 1.1925 8 6 2.1625 2.1078 1.1923 9 6 1.8031 1.4357 2.4923 10 6 2.9814 0.6373 2.9877 11 8 4.0118 0.6166 2.3483 12 7 2.8905 -0.0528 4.1417 13 6 1.6514 -0.0317 4.9310 14 6 1.2113 -1.4809 5.1882 15 6 2.3613 -2.2483 5.8447 16 6 1.9155 -3.6823 6.1376 17 7 0.8405 -3.6660 7.1326 18 6 0.2796 -4.8420 7.5540 19 1 0.6301 -5.7816 7.1531 20 6 -0.7387 -4.8266 8.4973 21 7 -1.1654 -3.6815 8.9863 22 14 -1.5042 -6.4308 9.0716 23 1 -0.4580 -7.2861 9.6872 24 1 -2.5621 -6.1437 10.0733 25 1 -2.1015 -7.1379 7.9104 26 6 3.5658 -2.2713 4.9010 27 6 4.0305 -0.8361 4.6373 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2539 1.5031 -2.1249 34 1 3.0796 3.8225 -2.1244 35 1 3.3153 5.0452 0.0003 36 1 2.7283 3.9469 2.1243 37 1 1.5399 2.1919 3.2318 38 1 0.9540 0.7705 2.3348 39 1 1.8316 0.4724 5.8804 40 1 0.8743 0.4948 4.3771 41 1 0.9486 -1.9571 4.2436 42 1 0.3459 -1.4853 5.8509 43 1 2.6398 -1.7571 6.7771 44 1 1.5536 -4.1450 5.2194 45 1 2.7597 -4.2534 6.5239 46 1 0.5264 -2.8222 7.4936 47 1 -1.8768 -3.6707 9.6457 48 1 3.2810 -2.7401 3.9590 49 1 4.3764 -2.8381 5.3588 50 1 4.8235 -0.8404 3.8896 51 1 4.4026 -0.3949 5.5619 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205512691.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:18 Heat of formation + Delta-G solvation = -19.531665 kcal Electronic energy + Delta-G solvation = -28464.999498 eV Core-core repulsion = 24749.413864 eV Total energy + Delta-G solvation = -3715.585634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.61993 -39.38182 -37.59912 -34.92554 -34.49651 -33.11753 -32.58542 -31.08905 -30.30803 -29.66733 -28.01301 -26.40114 -24.09803 -23.72412 -23.23021 -22.37716 -21.64281 -20.78847 -20.10406 -18.88479 -17.38812 -16.90703 -16.66515 -16.30514 -15.76859 -15.16754 -15.05779 -14.74684 -14.28028 -14.09721 -13.96022 -13.73934 -13.73356 -13.51098 -13.37461 -13.25002 -13.09084 -12.70481 -12.44759 -12.34363 -12.19366 -12.02678 -11.96528 -11.79773 -11.45290 -11.16526 -11.01190 -10.95779 -10.84236 -10.83623 -10.43827 -10.33517 -10.30320 -10.02341 -9.81270 -9.65659 -8.93215 -8.88102 -8.71581 -8.60631 -6.92983 -5.78396 -3.06382 1.18788 1.26838 2.59612 2.97314 3.42908 3.47425 3.48275 3.63348 4.43391 4.55866 4.57182 4.57687 4.72627 4.77949 4.87768 4.96753 5.01961 5.04614 5.09614 5.18121 5.19182 5.22862 5.31940 5.36159 5.41652 5.45899 5.48807 5.54707 5.63671 5.71262 5.77885 5.80500 5.85895 5.94293 5.95873 5.97240 6.07461 6.08880 6.18019 6.26860 6.32700 6.35757 6.44027 6.45815 6.51895 6.63010 6.79690 6.86678 6.90830 7.38560 7.68510 8.15264 8.41145 9.52211 10.10290 10.45050 11.44534 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020418 B = 0.002346 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.039033 B =11933.195854 C =12439.790040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.062 4.062 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.061 4.061 9 C -0.107 4.107 10 C 0.517 3.483 11 O -0.538 6.538 12 N -0.609 5.609 13 C 0.104 3.896 14 C -0.125 4.125 15 C -0.093 4.093 16 C 0.158 3.842 17 N -0.732 5.732 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.125 4.125 27 C 0.113 3.887 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.065 0.935 49 H 0.074 0.926 50 H 0.088 0.912 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.701 15.130 -17.887 24.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.062 4.062 4 C -0.137 4.137 5 C -0.137 4.137 6 C -0.144 4.144 7 C -0.123 4.123 8 C -0.061 4.061 9 C -0.147 4.147 10 C 0.305 3.695 11 O -0.415 6.415 12 N -0.343 5.343 13 C -0.019 4.019 14 C -0.163 4.163 15 C -0.112 4.112 16 C 0.030 3.970 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.164 4.164 27 C -0.009 4.009 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.035 0.965 45 H 0.036 0.964 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.084 0.916 49 H 0.093 0.907 50 H 0.107 0.893 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.205 14.937 -18.196 24.620 hybrid contribution -0.597 -0.630 0.641 1.079 sum 6.608 14.307 -17.555 23.591 Atomic orbital electron populations 1.21778 0.94511 1.02099 1.02118 1.20575 0.96109 0.92759 1.03169 1.19691 0.98130 0.95766 0.92608 1.20976 1.00182 0.95210 0.97328 1.21089 0.99870 0.94810 0.97979 1.21046 1.00887 0.99900 0.92558 1.20965 0.98722 0.94477 0.98151 1.19140 0.99862 0.93989 0.93146 1.20796 0.97935 1.00117 0.95853 1.20441 0.89288 0.79494 0.80236 1.90698 1.31213 1.63405 1.56226 1.48188 1.15084 1.48493 1.22567 1.21994 0.85346 0.98711 0.95847 1.22000 0.99313 0.93254 1.01719 1.21299 0.94168 0.97810 0.97963 1.20666 0.91318 0.92475 0.92493 1.42361 1.40734 1.06664 1.47842 1.19188 1.13251 0.86497 1.18043 0.91336 1.24725 0.99583 0.96803 0.99908 1.69643 1.31599 1.23689 1.33439 0.86269 0.78757 0.83015 0.78163 1.21307 1.21696 1.21303 1.21896 0.98617 0.95627 1.00257 1.21595 0.88634 0.91069 0.99615 0.92048 0.92450 0.92512 0.91011 0.90996 0.86249 0.86309 0.86257 0.86304 0.88104 0.87604 0.90998 0.90004 0.91752 0.89329 0.90993 0.96451 0.96404 0.78282 0.93494 0.91645 0.90703 0.89340 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.72 37.16 0.36 -0.89 16 2 C -0.09 -0.89 5.38 -27.88 -0.15 -1.04 16 3 C -0.06 -0.68 5.13 -104.62 -0.54 -1.22 16 4 C -0.12 -1.19 9.68 -39.58 -0.38 -1.57 16 5 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 6 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 7 C -0.11 -1.09 9.68 -39.58 -0.38 -1.48 16 8 C -0.06 -0.68 4.37 -104.62 -0.46 -1.13 16 9 C -0.11 -1.08 3.51 -29.03 -0.10 -1.18 16 10 C 0.52 6.67 6.89 -10.98 -0.08 6.59 16 11 O -0.54 -8.79 15.45 5.56 0.09 -8.70 16 12 N -0.61 -7.37 2.97 -172.53 -0.51 -7.88 16 13 C 0.10 1.14 6.37 -3.49 -0.02 1.12 16 14 C -0.12 -1.73 5.26 -26.39 -0.14 -1.87 16 15 C -0.09 -1.41 2.19 -90.58 -0.20 -1.60 16 16 C 0.16 3.08 5.65 -4.04 -0.02 3.05 16 17 N -0.73 -17.94 5.32 -59.91 -0.32 -18.26 16 18 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 22 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C -0.13 -1.61 5.36 -26.64 -0.14 -1.75 16 27 C 0.11 1.38 6.43 -3.73 -0.02 1.36 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.47 6.79 -51.93 -0.35 0.12 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 32 H 0.07 0.82 6.42 -51.93 -0.33 0.49 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.10 0.81 7.84 -51.93 -0.41 0.41 16 38 H 0.11 0.96 5.18 -51.93 -0.27 0.69 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.09 1.41 7.15 -51.93 -0.37 1.04 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.38 9.72 6.84 -40.82 -0.28 9.44 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.09 1.16 7.01 -51.93 -0.36 0.79 16 51 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 399.87 15.07 6.03 6.03 Total: -1.00 -32.59 399.87 -10.90 -43.49 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -8.57 Total: 7.08 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -3.32 Total: -11.96 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.11 Total: -53.11 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.59 -10.90 -43.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205512691.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.962 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds