Wall clock time and date at job start Tue Mar 31 2020 16:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47186 * 2 1 4 4 C 1.38256 * 120.00110 * 265.00095 * 3 2 1 5 5 C 1.38215 * 119.99734 * 180.02562 * 4 3 2 6 6 C 1.38252 * 120.00294 * 359.97438 * 5 4 3 7 7 C 1.38221 * 120.00067 * 359.97438 * 6 5 4 8 8 C 1.38218 * 119.99798 * 84.90571 * 3 2 1 9 9 C 1.50701 * 120.00045 * 0.04584 * 8 3 2 10 10 C 1.50708 * 109.46905 * 84.88575 * 9 8 3 11 11 O 1.21277 * 120.00137 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99648 * 179.97438 * 10 9 8 13 13 C 1.46928 * 120.63404 * 359.72540 * 12 10 9 14 14 C 1.53619 * 108.54413 * 126.36546 * 13 12 10 15 15 C 1.53045 * 109.24274 * 54.85680 * 14 13 12 16 16 C 1.53002 * 109.45876 * 178.48684 * 15 14 13 17 17 N 1.46493 * 109.47503 * 295.07079 * 16 15 14 18 18 C 1.36933 * 120.00041 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00289 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00263 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99543 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00366 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47004 * 60.00518 * 22 20 18 24 24 H 1.48494 * 109.47189 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47261 * 300.00767 * 22 20 18 26 26 C 1.53034 * 109.53691 * 298.51173 * 15 14 13 27 27 C 1.46930 * 120.62872 * 179.97438 * 12 10 9 28 28 H 1.09002 * 109.46660 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47154 * 300.00087 * 1 2 3 30 30 H 1.09007 * 109.46621 * 60.00179 * 1 2 3 31 31 H 1.08995 * 109.47402 * 240.00371 * 2 1 3 32 32 H 1.08996 * 109.47056 * 119.99667 * 2 1 3 33 33 H 1.07995 * 120.00047 * 0.26995 * 4 3 2 34 34 H 1.08000 * 119.99286 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.00307 * 179.97438 * 6 5 4 36 36 H 1.07999 * 120.00168 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.47462 * 204.88377 * 9 8 3 38 38 H 1.09002 * 109.47103 * 324.89351 * 9 8 3 39 39 H 1.08995 * 109.58398 * 246.19897 * 13 12 10 40 40 H 1.08998 * 109.58508 * 6.62299 * 13 12 10 41 41 H 1.09005 * 109.63679 * 294.86255 * 14 13 12 42 42 H 1.09002 * 109.45796 * 174.74029 * 14 13 12 43 43 H 1.08998 * 109.44749 * 58.52732 * 15 14 13 44 44 H 1.09001 * 109.47180 * 55.07130 * 16 15 14 45 45 H 1.08997 * 109.46665 * 175.06571 * 16 15 14 46 46 H 0.97000 * 120.00278 * 359.97438 * 17 16 15 47 47 H 0.97006 * 119.99904 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.49994 * 301.41102 * 26 15 14 49 49 H 1.09000 * 109.52373 * 181.33672 * 26 15 14 50 50 H 1.08995 * 109.58751 * 353.38274 * 27 12 10 51 51 H 1.09005 * 109.58099 * 113.65690 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3612 2.0379 -1.1928 5 6 2.8224 3.3408 -1.1926 6 6 2.9545 4.0273 0.0001 7 6 2.6247 3.4108 1.1925 8 6 2.1625 2.1078 1.1923 9 6 1.8031 1.4357 2.4923 10 6 2.9814 0.6373 2.9877 11 8 4.0118 0.6166 2.3483 12 7 2.8905 -0.0528 4.1417 13 6 1.6514 -0.0317 4.9310 14 6 1.2113 -1.4809 5.1882 15 6 2.3613 -2.2483 5.8447 16 6 1.9155 -3.6823 6.1376 17 7 0.8405 -3.6660 7.1326 18 6 0.2796 -4.8420 7.5540 19 1 0.6301 -5.7816 7.1531 20 6 -0.7387 -4.8266 8.4973 21 7 -1.1654 -3.6815 8.9863 22 14 -1.5042 -6.4308 9.0716 23 1 -0.4580 -7.2861 9.6872 24 1 -2.5621 -6.1437 10.0733 25 1 -2.1015 -7.1379 7.9104 26 6 3.5658 -2.2713 4.9010 27 6 4.0305 -0.8361 4.6373 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2539 1.5031 -2.1249 34 1 3.0796 3.8225 -2.1244 35 1 3.3153 5.0452 0.0003 36 1 2.7283 3.9469 2.1243 37 1 1.5399 2.1919 3.2318 38 1 0.9540 0.7705 2.3348 39 1 1.8316 0.4724 5.8804 40 1 0.8743 0.4948 4.3771 41 1 0.9486 -1.9571 4.2436 42 1 0.3459 -1.4853 5.8509 43 1 2.6398 -1.7571 6.7771 44 1 1.5536 -4.1450 5.2194 45 1 2.7597 -4.2534 6.5239 46 1 0.5264 -2.8222 7.4936 47 1 -1.8768 -3.6707 9.6457 48 1 3.2810 -2.7401 3.9590 49 1 4.3764 -2.8381 5.3588 50 1 4.8235 -0.8404 3.8896 51 1 4.4026 -0.3949 5.5619 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205512691.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:17 Heat of formation + Delta-G solvation = -36.412161 kcal Electronic energy + Delta-G solvation = -28465.731491 eV Core-core repulsion = 24749.413864 eV Total energy + Delta-G solvation = -3716.317627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.54558 -40.23405 -38.76546 -36.52463 -35.22877 -34.50948 -33.61614 -32.33665 -31.84344 -30.38278 -28.97859 -27.77688 -25.49498 -24.72071 -24.29768 -23.51515 -22.73561 -21.72565 -21.16943 -19.91677 -19.14213 -18.14939 -17.43695 -17.12282 -16.73282 -16.61395 -15.98448 -15.92920 -15.61387 -15.40265 -15.30680 -14.94118 -14.67413 -14.52697 -14.33308 -14.17194 -13.97437 -13.85943 -13.75277 -13.57232 -13.09133 -12.99826 -12.90767 -12.83135 -12.72105 -12.65232 -12.23751 -12.19648 -12.12591 -11.94378 -11.70102 -11.66982 -11.56129 -11.47312 -11.30931 -10.91846 -10.83211 -9.67459 -9.63816 -9.46017 -8.96861 -7.93834 -5.21485 0.44544 0.53310 1.48249 1.50421 1.56629 1.61830 2.03475 2.57128 2.88187 3.39436 3.60849 3.69830 3.77549 3.83642 3.86728 3.95264 4.02139 4.09098 4.15157 4.30122 4.31001 4.33699 4.39818 4.43920 4.48699 4.51526 4.60254 4.65126 4.71134 4.73956 4.76106 4.82059 4.86592 4.97180 5.01762 5.05841 5.07127 5.08220 5.16693 5.18624 5.24253 5.31544 5.38010 5.48509 5.55097 5.58982 5.61930 5.64727 5.76955 6.16052 6.29100 6.41801 7.17104 7.35973 8.12183 8.36788 9.29209 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020418 B = 0.002346 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.039033 B =11933.195854 C =12439.790040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.079 4.079 4 C -0.132 4.132 5 C -0.125 4.125 6 C -0.134 4.134 7 C -0.119 4.119 8 C -0.079 4.079 9 C -0.103 4.103 10 C 0.517 3.483 11 O -0.576 6.576 12 N -0.609 5.609 13 C 0.110 3.890 14 C -0.119 4.119 15 C -0.083 4.083 16 C 0.157 3.843 17 N -0.741 5.741 18 C -0.247 4.247 19 H 0.070 0.930 20 C -0.072 4.072 21 N -0.966 5.966 22 Si 0.970 3.030 23 H -0.280 1.280 24 H -0.294 1.294 25 H -0.279 1.279 26 C -0.115 4.115 27 C 0.115 3.885 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.014 0.986 45 H 0.016 0.984 46 H 0.377 0.623 47 H 0.252 0.748 48 H 0.059 0.941 49 H 0.084 0.916 50 H 0.081 0.919 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.720 15.866 -18.600 25.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.079 4.079 4 C -0.150 4.150 5 C -0.143 4.143 6 C -0.152 4.152 7 C -0.137 4.137 8 C -0.079 4.079 9 C -0.142 4.142 10 C 0.307 3.693 11 O -0.456 6.456 12 N -0.341 5.341 13 C -0.012 4.012 14 C -0.157 4.157 15 C -0.102 4.102 16 C 0.031 3.969 17 N -0.384 5.384 18 C -0.379 4.379 19 H 0.088 0.912 20 C -0.265 4.265 21 N -0.617 5.617 22 Si 0.799 3.201 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.205 1.205 26 C -0.153 4.153 27 C -0.007 4.007 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.151 0.849 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.134 0.866 39 H 0.101 0.899 40 H 0.126 0.874 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.032 0.968 45 H 0.034 0.966 46 H 0.209 0.791 47 H 0.060 0.940 48 H 0.078 0.922 49 H 0.103 0.897 50 H 0.099 0.901 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.241 15.660 -18.925 25.609 hybrid contribution -0.536 -0.870 0.802 1.299 sum 6.705 14.791 -18.123 24.334 Atomic orbital electron populations 1.21750 0.93411 1.02388 1.02531 1.20537 0.97038 0.92374 1.02363 1.19901 0.98703 0.96148 0.93154 1.21249 1.00207 0.95825 0.97690 1.21422 0.99178 0.94659 0.99009 1.21379 1.00465 1.00943 0.92383 1.21243 0.98761 0.94548 0.99160 1.19332 1.00587 0.94524 0.93502 1.20826 0.96801 1.00433 0.96136 1.20900 0.89492 0.79181 0.79727 1.90678 1.32901 1.64808 1.57240 1.48250 1.15230 1.48143 1.22523 1.22013 0.85555 0.96865 0.96742 1.21888 0.98009 0.95158 1.00688 1.21180 0.95448 0.95016 0.98583 1.20806 0.89749 0.95486 0.90901 1.42527 1.41698 1.05560 1.48634 1.19563 1.13081 0.87601 1.17636 0.91155 1.25501 1.00521 0.99880 1.00586 1.69786 1.32193 1.25536 1.34146 0.85263 0.77759 0.79440 0.77608 1.20629 1.22017 1.20541 1.21790 0.97805 0.96410 0.99318 1.21556 0.88620 0.90618 0.99922 0.91780 0.92240 0.91880 0.90815 0.92750 0.84923 0.84103 0.84199 0.85108 0.85793 0.86637 0.89881 0.87431 0.92207 0.91508 0.91236 0.96839 0.96628 0.79052 0.93956 0.92213 0.89728 0.90104 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.72 71.98 0.70 -1.59 16 2 C -0.09 -1.67 5.38 29.85 0.16 -1.51 16 3 C -0.08 -1.67 5.13 -19.86 -0.10 -1.77 16 4 C -0.13 -2.50 9.68 22.27 0.22 -2.29 16 5 C -0.12 -2.13 10.05 22.27 0.22 -1.91 16 6 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 7 C -0.12 -2.32 9.68 22.27 0.22 -2.10 16 8 C -0.08 -1.67 4.37 -19.86 -0.09 -1.76 16 9 C -0.10 -1.91 3.51 29.10 0.10 -1.81 16 10 C 0.52 12.76 6.89 87.66 0.60 13.37 16 11 O -0.58 -18.64 15.45 -3.02 -0.05 -18.69 16 12 N -0.61 -13.83 2.97 -818.16 -2.43 -16.25 16 13 C 0.11 2.22 6.37 86.51 0.55 2.78 16 14 C -0.12 -3.21 5.26 30.82 0.16 -3.05 16 15 C -0.08 -2.45 2.19 -10.77 -0.02 -2.48 16 16 C 0.16 6.10 5.65 86.38 0.49 6.59 16 17 N -0.74 -36.58 5.32 -343.47 -1.83 -38.41 16 18 C -0.25 -13.66 9.99 84.03 0.84 -12.82 16 19 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 20 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 21 N -0.97 -57.70 13.06 21.65 0.28 -57.41 16 22 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 C -0.11 -2.82 5.36 30.65 0.16 -2.66 16 27 C 0.12 2.68 6.43 86.35 0.55 3.23 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.91 6.79 -2.39 -0.02 0.89 16 30 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.07 1.35 8.05 -2.39 -0.02 1.33 16 32 H 0.05 1.24 6.42 -2.39 -0.02 1.22 16 33 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 35 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 36 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 37 H 0.12 1.68 7.84 -2.39 -0.02 1.66 16 38 H 0.12 1.89 5.18 -2.39 -0.01 1.88 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.11 1.64 5.93 -2.39 -0.01 1.63 16 41 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.07 2.13 7.15 -2.39 -0.02 2.11 16 43 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.38 19.38 6.84 -92.71 -0.63 18.75 16 47 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 48 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 50 H 0.08 2.06 7.01 -2.39 -0.02 2.04 16 51 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -69.77 399.87 3.74 -66.02 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.27 Total: 32.62 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 5.46 Total: -15.52 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -3.97 Total: -112.08 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.05 Total: -18.69 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -69.77 3.74 -66.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205512691.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.613 kcal (2) G-P(sol) polarization free energy of solvation -69.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds