Wall clock time and date at job start Tue Mar 31 2020 16:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.47123 * 2 1 4 4 C 1.38255 * 119.99637 * 90.00131 * 3 2 1 5 5 C 1.38221 * 119.99921 * 179.97438 * 4 3 2 6 6 C 1.38258 * 119.99635 * 0.02562 * 5 4 3 7 7 C 1.38205 * 120.00152 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00098 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47266 * 89.99737 * 8 7 6 10 10 O 1.21279 * 120.00113 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99961 * 180.02562 * 9 8 7 12 12 C 1.46927 * 120.62995 * 359.72079 * 11 9 8 13 13 C 1.53626 * 108.53906 * 126.36585 * 12 11 9 14 14 C 1.53041 * 109.24183 * 54.85853 * 13 12 11 15 15 C 1.52998 * 109.46043 * 178.48489 * 14 13 12 16 16 N 1.46496 * 109.47341 * 295.06624 * 15 14 13 17 17 C 1.36941 * 120.00175 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99863 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99964 * 180.02562 * 17 16 15 20 20 N 1.31613 * 120.00004 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99725 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47320 * 59.99346 * 21 19 17 23 23 H 1.48501 * 109.47140 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47178 * 299.99154 * 21 19 17 25 25 C 1.53036 * 109.53807 * 298.50777 * 14 13 12 26 26 C 1.46923 * 120.62964 * 179.97438 * 11 9 8 27 27 C 1.38211 * 120.00124 * 270.27847 * 3 2 1 28 28 H 1.09005 * 109.47113 * 299.99863 * 1 2 3 29 29 H 1.09001 * 109.46961 * 59.99431 * 1 2 3 30 30 H 1.08998 * 109.46844 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46679 * 240.00384 * 2 1 3 32 32 H 1.09002 * 109.47098 * 120.00035 * 2 1 3 33 33 H 1.08002 * 120.00208 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.00046 * 180.02562 * 5 4 3 35 35 H 1.07996 * 119.99424 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47205 * 329.99831 * 8 7 6 37 37 H 1.08997 * 109.47395 * 210.00323 * 8 7 6 38 38 H 1.08998 * 109.58645 * 246.19910 * 12 11 9 39 39 H 1.09001 * 109.58579 * 6.63067 * 12 11 9 40 40 H 1.08990 * 109.63926 * 294.86483 * 13 12 11 41 41 H 1.09005 * 109.42826 * 174.72267 * 13 12 11 42 42 H 1.09009 * 109.44893 * 58.52020 * 14 13 12 43 43 H 1.09000 * 109.46928 * 55.07061 * 15 14 13 44 44 H 1.09002 * 109.46949 * 175.06508 * 15 14 13 45 45 H 0.97006 * 119.99888 * 0.02562 * 16 15 14 46 46 H 0.97006 * 120.00097 * 180.02562 * 20 19 17 47 47 H 1.09001 * 109.49825 * 301.41219 * 25 14 13 48 48 H 1.09001 * 109.52568 * 181.32976 * 25 14 13 49 49 H 1.09007 * 109.58781 * 353.37617 * 26 11 9 50 50 H 1.08998 * 109.58580 * 113.65434 * 26 11 9 51 51 H 1.07993 * 120.00035 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1974 5 6 2.7241 3.3755 1.1974 6 6 2.9545 4.0272 0.0001 7 6 2.7231 3.3761 -1.1968 8 6 2.9737 4.0867 -2.5019 9 6 4.3966 3.8495 -2.9379 10 8 5.1344 3.1699 -2.2563 11 7 4.8492 4.3926 -4.0854 12 6 3.9656 5.2131 -4.9249 13 6 4.6507 6.5642 -5.1804 14 6 6.0380 6.3211 -5.7790 15 6 6.7099 7.6644 -6.0705 16 7 5.9568 8.3720 -7.1089 17 6 6.3725 9.6048 -7.5363 18 1 7.2554 10.0555 -7.1076 19 6 5.6585 10.2754 -8.5198 20 7 4.5824 9.7263 -9.0419 21 14 6.2260 11.9568 -9.1034 22 1 7.5965 11.8493 -9.6650 23 1 5.2997 12.4557 -10.1514 24 1 6.2332 12.9019 -7.9580 25 6 6.8919 5.5286 -4.7865 26 6 6.2340 4.1709 -4.5234 27 6 2.2573 2.0743 -1.1969 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 2.0832 1.5632 2.1327 34 1 2.9045 3.8844 2.1328 35 1 3.3145 5.0454 0.0002 36 1 2.8072 5.1560 -2.3712 37 1 2.2922 3.7031 -3.2612 38 1 3.7874 4.7056 -5.8729 39 1 3.0183 5.3738 -4.4102 40 1 4.7500 7.1080 -4.2410 41 1 4.0508 7.1488 -5.8780 42 1 5.9394 5.7556 -6.7057 43 1 6.7290 8.2659 -5.1617 44 1 7.7300 7.4933 -6.4144 45 1 5.1632 7.9675 -7.4931 46 1 4.0837 10.1948 -9.7295 47 1 6.9701 6.0821 -3.8508 48 1 7.8875 5.3759 -5.2033 49 1 6.7839 3.6435 -3.7438 50 1 6.2375 3.5777 -5.4379 51 1 2.0726 1.5669 -2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205537527.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:22 Heat of formation + Delta-G solvation = -22.169546 kcal Electronic energy + Delta-G solvation = -27651.277113 eV Core-core repulsion = 23935.577093 eV Total energy + Delta-G solvation = -3715.700021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.47369 -39.40698 -37.64975 -34.93373 -34.67986 -33.05854 -32.51346 -31.08703 -30.30702 -29.72740 -28.01934 -26.38719 -24.19274 -23.79580 -23.22834 -22.39604 -21.73131 -20.77920 -20.02265 -18.85342 -17.37836 -16.89899 -16.72077 -16.06674 -15.86206 -15.19950 -15.13140 -14.76163 -14.26971 -14.17609 -14.00082 -13.87373 -13.71843 -13.56381 -13.34065 -13.32038 -13.10102 -12.70038 -12.44851 -12.32405 -12.25248 -12.05235 -11.97793 -11.79664 -11.50700 -11.18476 -11.04335 -11.00496 -10.97666 -10.83525 -10.43579 -10.33351 -10.30113 -10.02141 -9.81530 -9.65460 -8.92785 -8.87938 -8.75087 -8.60532 -6.92757 -5.78199 -3.06186 1.17860 1.25877 2.59834 2.97082 3.43107 3.47571 3.48447 3.62149 4.40339 4.47755 4.56392 4.57836 4.64916 4.84130 4.88184 4.93584 5.01375 5.04168 5.07279 5.10077 5.19507 5.21654 5.26499 5.34276 5.36360 5.42066 5.48272 5.54920 5.59955 5.61210 5.64229 5.80785 5.83016 5.90505 5.94637 5.95845 5.97514 6.08817 6.18429 6.27137 6.30895 6.40694 6.44419 6.45795 6.46430 6.63201 6.79961 6.85752 6.91125 7.38716 7.68729 8.15121 8.41310 9.52391 10.10482 10.45281 11.44713 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024087 B = 0.001957 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.155483 B =14302.815636 C =14548.929494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.121 4.121 5 C -0.116 4.116 6 C -0.109 4.109 7 C -0.059 4.059 8 C -0.104 4.104 9 C 0.517 3.483 10 O -0.540 6.540 11 N -0.610 5.610 12 C 0.104 3.896 13 C -0.125 4.125 14 C -0.094 4.094 15 C 0.158 3.842 16 N -0.732 5.732 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.125 4.125 26 C 0.113 3.887 27 C -0.103 4.103 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.065 0.935 48 H 0.074 0.926 49 H 0.088 0.912 50 H 0.065 0.935 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.471 -18.417 17.935 26.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.139 4.139 5 C -0.134 4.134 6 C -0.127 4.127 7 C -0.059 4.059 8 C -0.144 4.144 9 C 0.305 3.695 10 O -0.417 6.417 11 N -0.343 5.343 12 C -0.019 4.019 13 C -0.163 4.163 14 C -0.113 4.113 15 C 0.030 3.970 16 N -0.376 5.376 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.584 5.584 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.164 4.164 26 C -0.009 4.009 27 C -0.121 4.121 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.035 0.965 44 H 0.036 0.964 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.107 0.893 50 H 0.084 0.916 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.986 -18.625 18.265 27.006 hybrid contribution 0.087 1.049 -0.648 1.236 sum -6.899 -17.576 17.617 25.824 Atomic orbital electron populations 1.21750 0.94738 1.01630 1.02227 1.20539 0.96112 0.92748 1.02833 1.19816 0.99273 0.96083 0.93094 1.20979 1.00527 0.95014 0.97353 1.21068 0.99540 0.94956 0.97846 1.20972 0.99707 1.00054 0.91999 1.19276 0.98667 0.94346 0.93659 1.20730 0.94896 1.02617 0.96114 1.20469 0.89411 0.79336 0.80302 1.90698 1.58254 1.39159 1.53558 1.48190 1.12869 1.50890 1.22388 1.21997 0.92955 0.91974 0.94953 1.22001 0.96961 0.95381 1.01967 1.21303 0.94646 0.97442 0.97876 1.20670 0.94187 0.90058 0.92063 1.42363 1.31734 1.19380 1.44118 1.19194 1.07956 0.93955 1.15908 0.91325 1.24724 0.97799 0.98891 0.99611 1.69638 1.18970 1.38732 1.31013 0.86268 0.77631 0.84157 0.78131 1.21306 1.21693 1.21312 1.21898 0.99133 0.95338 1.00038 1.21594 0.81604 0.97459 1.00251 1.20815 0.99788 0.93925 0.97560 0.92594 0.92510 0.92467 0.91068 0.91119 0.86389 0.86138 0.86273 0.87764 0.87980 0.91007 0.89934 0.91757 0.89330 0.90986 0.96453 0.96382 0.78283 0.93496 0.91641 0.90698 0.89344 0.91624 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.90 37.16 0.37 -0.56 16 2 C -0.08 -0.63 6.06 -27.88 -0.17 -0.80 16 3 C -0.08 -0.80 5.13 -104.62 -0.54 -1.34 16 4 C -0.12 -1.13 9.70 -39.58 -0.38 -1.52 16 5 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 6 C -0.11 -1.18 9.70 -39.59 -0.38 -1.56 16 7 C -0.06 -0.65 4.37 -104.63 -0.46 -1.11 16 8 C -0.10 -1.02 4.18 -29.04 -0.12 -1.14 16 9 C 0.52 6.69 7.69 -10.98 -0.08 6.61 16 10 O -0.54 -8.90 15.45 5.56 0.09 -8.82 16 11 N -0.61 -7.42 2.97 -172.53 -0.51 -7.94 16 12 C 0.10 1.15 6.37 -3.48 -0.02 1.12 16 13 C -0.12 -1.74 5.26 -26.38 -0.14 -1.88 16 14 C -0.09 -1.42 2.19 -90.58 -0.20 -1.62 16 15 C 0.16 3.09 5.65 -4.04 -0.02 3.07 16 16 N -0.73 -18.00 5.32 -59.91 -0.32 -18.32 16 17 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 18 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 21 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 C -0.13 -1.62 5.36 -26.63 -0.14 -1.77 16 26 C 0.11 1.40 6.43 -3.73 -0.02 1.37 16 27 C -0.10 -1.08 9.36 -39.58 -0.37 -1.45 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.10 0.88 7.65 -51.93 -0.40 0.48 16 37 H 0.10 0.80 7.88 -51.93 -0.41 0.39 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.09 1.42 7.15 -51.93 -0.37 1.05 16 42 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.38 9.75 6.84 -40.82 -0.28 9.47 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.09 1.16 7.01 -51.93 -0.36 0.80 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 407.11 15.07 6.14 6.14 Total: -1.00 -32.82 407.11 -11.10 -43.92 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -8.86 Total: 6.18 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -3.33 Total: -11.38 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.11 Total: -53.27 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.82 -11.10 -43.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205537527.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.747 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds