Wall clock time and date at job start Tue Mar 31 2020 16:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.47123 * 2 1 4 4 C 1.38255 * 119.99637 * 90.00131 * 3 2 1 5 5 C 1.38221 * 119.99921 * 179.97438 * 4 3 2 6 6 C 1.38258 * 119.99635 * 0.02562 * 5 4 3 7 7 C 1.38205 * 120.00152 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00098 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47266 * 89.99737 * 8 7 6 10 10 O 1.21279 * 120.00113 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99961 * 180.02562 * 9 8 7 12 12 C 1.46927 * 120.62995 * 359.72079 * 11 9 8 13 13 C 1.53626 * 108.53906 * 126.36585 * 12 11 9 14 14 C 1.53041 * 109.24183 * 54.85853 * 13 12 11 15 15 C 1.52998 * 109.46043 * 178.48489 * 14 13 12 16 16 N 1.46496 * 109.47341 * 295.06624 * 15 14 13 17 17 C 1.36941 * 120.00175 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99863 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99964 * 180.02562 * 17 16 15 20 20 N 1.31613 * 120.00004 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99725 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47320 * 59.99346 * 21 19 17 23 23 H 1.48501 * 109.47140 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47178 * 299.99154 * 21 19 17 25 25 C 1.53036 * 109.53807 * 298.50777 * 14 13 12 26 26 C 1.46923 * 120.62964 * 179.97438 * 11 9 8 27 27 C 1.38211 * 120.00124 * 270.27847 * 3 2 1 28 28 H 1.09005 * 109.47113 * 299.99863 * 1 2 3 29 29 H 1.09001 * 109.46961 * 59.99431 * 1 2 3 30 30 H 1.08998 * 109.46844 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46679 * 240.00384 * 2 1 3 32 32 H 1.09002 * 109.47098 * 120.00035 * 2 1 3 33 33 H 1.08002 * 120.00208 * 0.02562 * 4 3 2 34 34 H 1.08001 * 120.00046 * 180.02562 * 5 4 3 35 35 H 1.07996 * 119.99424 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47205 * 329.99831 * 8 7 6 37 37 H 1.08997 * 109.47395 * 210.00323 * 8 7 6 38 38 H 1.08998 * 109.58645 * 246.19910 * 12 11 9 39 39 H 1.09001 * 109.58579 * 6.63067 * 12 11 9 40 40 H 1.08990 * 109.63926 * 294.86483 * 13 12 11 41 41 H 1.09005 * 109.42826 * 174.72267 * 13 12 11 42 42 H 1.09009 * 109.44893 * 58.52020 * 14 13 12 43 43 H 1.09000 * 109.46928 * 55.07061 * 15 14 13 44 44 H 1.09002 * 109.46949 * 175.06508 * 15 14 13 45 45 H 0.97006 * 119.99888 * 0.02562 * 16 15 14 46 46 H 0.97006 * 120.00097 * 180.02562 * 20 19 17 47 47 H 1.09001 * 109.49825 * 301.41219 * 25 14 13 48 48 H 1.09001 * 109.52568 * 181.32976 * 25 14 13 49 49 H 1.09007 * 109.58781 * 353.37617 * 26 11 9 50 50 H 1.08998 * 109.58580 * 113.65434 * 26 11 9 51 51 H 1.07993 * 120.00035 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1974 5 6 2.7241 3.3755 1.1974 6 6 2.9545 4.0272 0.0001 7 6 2.7231 3.3761 -1.1968 8 6 2.9737 4.0867 -2.5019 9 6 4.3966 3.8495 -2.9379 10 8 5.1344 3.1699 -2.2563 11 7 4.8492 4.3926 -4.0854 12 6 3.9656 5.2131 -4.9249 13 6 4.6507 6.5642 -5.1804 14 6 6.0380 6.3211 -5.7790 15 6 6.7099 7.6644 -6.0705 16 7 5.9568 8.3720 -7.1089 17 6 6.3725 9.6048 -7.5363 18 1 7.2554 10.0555 -7.1076 19 6 5.6585 10.2754 -8.5198 20 7 4.5824 9.7263 -9.0419 21 14 6.2260 11.9568 -9.1034 22 1 7.5965 11.8493 -9.6650 23 1 5.2997 12.4557 -10.1514 24 1 6.2332 12.9019 -7.9580 25 6 6.8919 5.5286 -4.7865 26 6 6.2340 4.1709 -4.5234 27 6 2.2573 2.0743 -1.1969 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 2.0832 1.5632 2.1327 34 1 2.9045 3.8844 2.1328 35 1 3.3145 5.0454 0.0002 36 1 2.8072 5.1560 -2.3712 37 1 2.2922 3.7031 -3.2612 38 1 3.7874 4.7056 -5.8729 39 1 3.0183 5.3738 -4.4102 40 1 4.7500 7.1080 -4.2410 41 1 4.0508 7.1488 -5.8780 42 1 5.9394 5.7556 -6.7057 43 1 6.7290 8.2659 -5.1617 44 1 7.7300 7.4933 -6.4144 45 1 5.1632 7.9675 -7.4931 46 1 4.0837 10.1948 -9.7295 47 1 6.9701 6.0821 -3.8508 48 1 7.8875 5.3759 -5.2033 49 1 6.7839 3.6435 -3.7438 50 1 6.2375 3.5777 -5.4379 51 1 2.0726 1.5669 -2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205537527.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:21 Heat of formation + Delta-G solvation = -38.993898 kcal Electronic energy + Delta-G solvation = -27652.006672 eV Core-core repulsion = 23935.577093 eV Total energy + Delta-G solvation = -3716.429579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.42531 -40.21241 -38.82119 -36.53302 -35.34903 -34.50377 -33.46624 -32.33187 -31.84357 -30.38629 -28.98370 -27.76850 -25.47229 -24.78711 -24.29873 -23.53168 -22.79110 -21.76156 -21.04692 -19.87031 -19.14414 -18.13774 -17.46521 -16.87920 -16.80980 -16.64743 -16.06761 -15.86138 -15.62092 -15.42141 -15.31180 -14.91003 -14.71096 -14.54023 -14.41742 -14.09439 -14.01849 -13.90056 -13.71732 -13.54173 -13.09360 -12.97588 -12.91880 -12.82290 -12.72081 -12.58813 -12.23727 -12.19080 -12.10398 -11.94711 -11.68754 -11.67511 -11.62578 -11.47960 -11.31168 -10.92305 -10.83606 -9.67285 -9.64130 -9.48489 -8.97171 -7.94139 -5.21841 0.43292 0.52092 1.48006 1.50256 1.56454 1.61935 2.03382 2.56832 2.86692 3.39060 3.61913 3.68636 3.77357 3.83381 3.85257 3.95948 4.00715 4.14958 4.23764 4.28059 4.30450 4.36651 4.40029 4.44203 4.52461 4.58581 4.58722 4.60521 4.70361 4.74040 4.79137 4.82229 4.86323 4.97037 5.01047 5.07195 5.08204 5.10014 5.18104 5.20444 5.23773 5.31504 5.39612 5.48183 5.54816 5.57738 5.60819 5.67835 5.74145 6.14867 6.28728 6.41940 7.16761 7.35608 8.11807 8.36487 9.28837 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024087 B = 0.001957 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.155483 B =14302.815636 C =14548.929494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.129 4.129 5 C -0.125 4.125 6 C -0.129 4.129 7 C -0.074 4.074 8 C -0.099 4.099 9 C 0.516 3.484 10 O -0.579 6.579 11 N -0.609 5.609 12 C 0.111 3.889 13 C -0.120 4.120 14 C -0.084 4.084 15 C 0.157 3.843 16 N -0.741 5.741 17 C -0.248 4.248 18 H 0.071 0.929 19 C -0.073 4.073 20 N -0.966 5.966 21 Si 0.971 3.029 22 H -0.280 1.280 23 H -0.294 1.294 24 H -0.279 1.279 25 C -0.115 4.115 26 C 0.115 3.885 27 C -0.119 4.119 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.013 0.987 44 H 0.016 0.984 45 H 0.377 0.623 46 H 0.252 0.748 47 H 0.059 0.941 48 H 0.084 0.916 49 H 0.080 0.920 50 H 0.078 0.922 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.942 -19.037 18.615 27.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.147 4.147 5 C -0.143 4.143 6 C -0.147 4.147 7 C -0.075 4.075 8 C -0.138 4.138 9 C 0.305 3.695 10 O -0.459 6.459 11 N -0.341 5.341 12 C -0.011 4.011 13 C -0.158 4.158 14 C -0.103 4.103 15 C 0.030 3.970 16 N -0.384 5.384 17 C -0.380 4.380 18 H 0.089 0.911 19 C -0.265 4.265 20 N -0.616 5.616 21 Si 0.800 3.200 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.206 1.206 25 C -0.153 4.153 26 C -0.007 4.007 27 C -0.137 4.137 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.101 0.899 39 H 0.128 0.872 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.031 0.969 44 H 0.034 0.966 45 H 0.210 0.790 46 H 0.060 0.940 47 H 0.078 0.922 48 H 0.103 0.897 49 H 0.099 0.901 50 H 0.096 0.904 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.440 -19.247 18.960 28.023 hybrid contribution 0.287 1.215 -0.802 1.484 sum -7.152 -18.032 18.158 26.571 Atomic orbital electron populations 1.21722 0.93872 1.02403 1.01992 1.20579 0.96799 0.91487 1.03290 1.20141 0.98784 0.97116 0.93003 1.21282 1.00168 0.95067 0.98192 1.21362 0.99190 0.95345 0.98356 1.21192 1.00417 1.00582 0.92546 1.19476 0.99036 0.94793 0.94170 1.20776 0.93112 1.03639 0.96319 1.20980 0.90308 0.78440 0.79738 1.90679 1.59567 1.41020 1.54669 1.48258 1.12891 1.50629 1.22368 1.22022 0.93345 0.90001 0.95765 1.21894 0.96099 0.96927 1.00890 1.21188 0.95442 0.95110 0.98549 1.20812 0.93969 0.91842 0.90370 1.42526 1.31918 1.18955 1.45002 1.19572 1.07747 0.95073 1.15588 0.91143 1.25505 0.98245 1.02498 1.00260 1.69782 1.20117 1.40077 1.31640 0.85256 0.77169 0.80064 0.77526 1.20619 1.21992 1.20571 1.21792 0.99284 0.95277 0.98979 1.21554 0.81800 0.96849 1.00528 1.21033 1.00248 0.94081 0.98313 0.92599 0.92969 0.91188 0.91034 0.90244 0.84489 0.84449 0.85892 0.86199 0.85647 0.89906 0.87183 0.92238 0.91513 0.91211 0.96869 0.96598 0.79049 0.93953 0.92239 0.89729 0.90129 0.90357 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.90 71.98 0.71 -0.87 16 2 C -0.08 -1.13 6.06 29.85 0.18 -0.95 16 3 C -0.09 -1.66 5.13 -19.87 -0.10 -1.76 16 4 C -0.13 -2.28 9.70 22.27 0.22 -2.06 16 5 C -0.12 -2.33 10.05 22.27 0.22 -2.10 16 6 C -0.13 -2.70 9.70 22.27 0.22 -2.49 16 7 C -0.07 -1.56 4.37 -19.87 -0.09 -1.65 16 8 C -0.10 -1.78 4.18 29.10 0.12 -1.65 16 9 C 0.52 12.68 7.69 87.66 0.67 13.36 16 10 O -0.58 -18.88 15.45 -3.03 -0.05 -18.92 16 11 N -0.61 -13.80 2.97 -818.13 -2.43 -16.23 16 12 C 0.11 2.21 6.37 86.51 0.55 2.76 16 13 C -0.12 -3.24 5.26 30.82 0.16 -3.08 16 14 C -0.08 -2.49 2.19 -10.77 -0.02 -2.51 16 15 C 0.16 6.11 5.65 86.38 0.49 6.60 16 16 N -0.74 -36.68 5.32 -343.46 -1.83 -38.51 16 17 C -0.25 -13.76 9.99 84.03 0.84 -12.92 16 18 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 19 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 20 N -0.97 -57.75 13.06 21.65 0.28 -57.47 16 21 Si 0.97 45.71 29.55 68.60 2.03 47.73 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 25 C -0.11 -2.84 5.36 30.66 0.16 -2.67 16 26 C 0.12 2.68 6.43 86.35 0.55 3.24 16 27 C -0.12 -2.39 9.36 22.27 0.21 -2.19 16 28 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 32 H 0.08 0.91 8.09 -2.39 -0.02 0.90 16 33 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 34 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 35 H 0.12 2.33 8.06 -2.91 -0.02 2.31 16 36 H 0.12 1.75 7.65 -2.38 -0.02 1.74 16 37 H 0.13 1.63 7.88 -2.39 -0.02 1.61 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 1.62 5.93 -2.39 -0.01 1.61 16 40 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.07 2.13 7.15 -2.38 -0.02 2.12 16 42 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 43 H 0.01 0.53 8.14 -2.39 -0.02 0.52 16 44 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.38 19.43 6.84 -92.70 -0.63 18.79 16 46 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 47 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 48 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.08 2.06 7.01 -2.38 -0.02 2.04 16 50 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.12 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -70.31 407.11 3.84 -66.47 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 0.26 Total: 31.52 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 5.57 Total: -14.60 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -3.97 Total: -112.21 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.05 Total: -18.92 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -70.31 3.84 -66.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205537527.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.481 kcal (2) G-P(sol) polarization free energy of solvation -70.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds