Wall clock time and date at job start Tue Mar 31 2020 16:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46640 * 2 1 4 4 C 1.38234 * 120.00257 * 90.00059 * 3 2 1 5 5 C 1.38238 * 119.99675 * 180.27927 * 4 3 2 6 6 C 1.38229 * 120.00124 * 359.45911 * 5 4 3 7 7 C 1.50699 * 120.00230 * 180.28369 * 6 5 4 8 8 C 1.50691 * 109.47261 * 270.27992 * 7 6 5 9 9 O 1.21285 * 119.99959 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00271 * 179.97438 * 8 7 6 11 11 C 1.46933 * 120.62935 * 359.72054 * 10 8 7 12 12 C 1.53625 * 108.54273 * 126.36871 * 11 10 8 13 13 C 1.53038 * 109.24381 * 54.85312 * 12 11 10 14 14 C 1.52998 * 109.45824 * 178.48875 * 13 12 11 15 15 N 1.46500 * 109.47220 * 295.07102 * 14 13 12 16 16 C 1.36934 * 120.00175 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00263 * 359.97438 * 16 15 14 18 18 C 1.38818 * 120.00061 * 180.02562 * 16 15 14 19 19 N 1.31613 * 120.00083 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99791 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47004 * 59.99796 * 20 18 16 22 22 H 1.48493 * 109.47001 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47399 * 300.00001 * 20 18 16 24 24 C 1.53033 * 109.53983 * 298.51267 * 13 12 11 25 25 C 1.46924 * 120.63127 * 179.97438 * 10 8 7 26 26 C 1.38234 * 119.99957 * 0.56005 * 6 5 4 27 27 C 1.38234 * 119.99503 * 270.01660 * 3 2 1 28 28 H 1.09007 * 109.46457 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47443 * 300.00009 * 1 2 3 30 30 H 1.09000 * 109.46671 * 60.00704 * 1 2 3 31 31 H 1.08988 * 109.47457 * 239.99524 * 2 1 3 32 32 H 1.09000 * 109.46671 * 119.99295 * 2 1 3 33 33 H 1.08002 * 119.99744 * 359.97438 * 4 3 2 34 34 H 1.08004 * 119.99577 * 179.72816 * 5 4 3 35 35 H 1.09007 * 109.47085 * 30.27493 * 7 6 5 36 36 H 1.08998 * 109.47270 * 150.26989 * 7 6 5 37 37 H 1.08996 * 109.58069 * 246.20141 * 11 10 8 38 38 H 1.09001 * 109.58301 * 6.61999 * 11 10 8 39 39 H 1.09003 * 109.63107 * 294.86074 * 12 11 10 40 40 H 1.08997 * 109.42669 * 174.72680 * 12 11 10 41 41 H 1.09005 * 109.44619 * 58.52311 * 13 12 11 42 42 H 1.08997 * 109.47472 * 55.06633 * 14 13 12 43 43 H 1.08998 * 109.47106 * 175.06911 * 14 13 12 44 44 H 0.97004 * 120.00177 * 0.02562 * 15 14 13 45 45 H 0.97002 * 120.00253 * 179.97438 * 19 18 16 46 46 H 1.09006 * 109.49587 * 301.41563 * 24 13 12 47 47 H 1.09000 * 109.52887 * 181.33368 * 24 13 12 48 48 H 1.08998 * 109.58869 * 353.38042 * 25 10 8 49 49 H 1.09004 * 109.58522 * 113.65931 * 25 10 8 50 50 H 1.08001 * 120.00274 * 179.72697 * 26 6 5 51 51 H 1.07997 * 120.00460 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7178 3.3779 1.1970 6 6 2.9533 4.0276 -0.0001 7 6 3.4556 5.4485 -0.0003 8 6 2.2835 6.3956 0.0002 9 8 1.1517 5.9598 0.0001 10 7 2.4930 7.7270 0.0007 11 6 3.8583 8.2701 0.0069 12 6 3.9986 9.2527 -1.1656 13 6 2.9001 10.3138 -1.0686 14 6 3.0580 11.3170 -2.2130 15 7 4.3186 12.0461 -2.0527 16 6 4.6766 13.0032 -2.9642 17 1 4.0299 13.2204 -3.8015 18 6 5.8713 13.6937 -2.8126 19 7 6.6597 13.4288 -1.7926 20 14 6.3599 14.9989 -4.0564 21 1 5.3289 16.0674 -4.0836 22 1 7.6689 15.5846 -3.6709 23 1 6.4700 14.3829 -5.4032 24 6 1.5289 9.6413 -1.1658 25 6 1.3605 8.6630 0.0006 26 6 2.7225 3.3761 -1.1973 27 6 2.2623 2.0726 -1.1972 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5138 -0.8898 32 1 1.8933 -0.5137 0.8901 33 1 2.0823 1.5636 2.1324 34 1 2.8936 3.8885 2.1323 35 1 4.0614 5.6197 0.8896 36 1 4.0609 5.6197 -0.8904 37 1 4.0401 8.7905 0.9472 38 1 4.5753 7.4571 -0.1078 39 1 3.9020 8.7141 -2.1083 40 1 4.9751 9.7347 -1.1198 41 1 2.9821 10.8350 -0.1148 42 1 3.0646 10.7850 -3.1643 43 1 2.2263 12.0212 -2.1962 44 1 4.8997 11.8508 -1.3010 45 1 7.4947 13.9110 -1.6868 46 1 1.4556 9.0990 -2.1085 47 1 0.7471 10.3995 -1.1205 48 1 0.4290 8.1095 -0.1183 49 1 1.3410 9.2131 0.9414 50 1 2.9023 3.8852 -2.1326 51 1 2.0817 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206439716.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:25 Heat of formation + Delta-G solvation = -22.176119 kcal Electronic energy + Delta-G solvation = -27559.953073 eV Core-core repulsion = 23844.252767 eV Total energy + Delta-G solvation = -3715.700306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.46427 -39.40715 -37.65997 -34.96164 -34.82929 -32.94205 -31.80681 -31.07408 -30.77172 -30.29620 -27.71941 -26.37891 -24.02484 -23.38423 -23.10837 -22.90472 -21.76060 -20.83935 -20.14382 -18.90854 -17.38051 -16.90077 -16.50510 -16.09608 -15.75772 -15.22641 -15.12290 -14.75283 -14.26789 -14.07074 -14.01696 -13.92537 -13.73802 -13.57438 -13.44161 -13.27902 -13.20152 -12.78119 -12.45191 -12.32273 -12.12681 -12.04614 -11.97840 -11.77652 -11.45538 -11.17731 -11.03747 -11.01786 -11.00080 -10.83434 -10.43533 -10.33307 -10.30042 -10.02049 -9.80004 -9.65351 -9.03832 -8.87841 -8.66567 -8.60343 -6.92677 -5.78099 -3.06065 1.14916 1.28841 2.60122 2.97152 3.43165 3.47659 3.48537 3.61912 4.41784 4.55315 4.56227 4.57964 4.61641 4.79325 4.84435 4.88212 5.03066 5.06151 5.08257 5.12685 5.19680 5.23711 5.24956 5.34983 5.36743 5.44519 5.48867 5.55037 5.57713 5.63982 5.66014 5.80842 5.83979 5.92592 5.92908 5.95720 5.97600 6.08875 6.18436 6.25160 6.27353 6.44255 6.44471 6.45297 6.46360 6.63308 6.80016 6.85801 6.91179 7.38998 7.68826 8.15426 8.41348 9.52481 10.10576 10.45400 11.44796 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026609 B = 0.001901 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.017054 B =14723.558473 C =15014.125069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.086 4.086 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.067 4.067 7 C -0.103 4.103 8 C 0.517 3.483 9 O -0.540 6.540 10 N -0.610 5.610 11 C 0.104 3.896 12 C -0.125 4.125 13 C -0.094 4.094 14 C 0.158 3.842 15 N -0.731 5.731 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.935 5.935 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.125 4.125 25 C 0.113 3.887 26 C -0.101 4.101 27 C -0.117 4.117 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.088 0.912 49 H 0.065 0.935 50 H 0.120 0.880 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.628 -24.821 6.805 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.086 4.086 4 C -0.136 4.136 5 C -0.120 4.120 6 C -0.067 4.067 7 C -0.143 4.143 8 C 0.305 3.695 9 O -0.417 6.417 10 N -0.343 5.343 11 C -0.019 4.019 12 C -0.163 4.163 13 C -0.113 4.113 14 C 0.030 3.970 15 N -0.376 5.376 16 C -0.370 4.370 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.164 4.164 25 C -0.009 4.009 26 C -0.119 4.119 27 C -0.135 4.135 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.035 0.965 43 H 0.036 0.964 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.107 0.893 49 H 0.084 0.916 50 H 0.138 0.862 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.231 -24.932 6.666 27.409 hybrid contribution 0.630 0.964 -0.478 1.247 sum -8.601 -23.968 6.188 26.206 Atomic orbital electron populations 1.21752 0.94729 1.01537 1.02431 1.20532 0.96217 0.92733 1.02647 1.19871 0.99180 0.96257 0.93264 1.20934 1.00370 0.94848 0.97431 1.20939 0.99050 0.94684 0.97323 1.19283 0.99848 0.93998 0.93599 1.20722 0.97096 0.91211 1.05283 1.20484 0.90604 0.82358 0.76098 1.90698 1.24312 1.76800 1.49892 1.48192 1.07891 1.05253 1.73005 1.21997 0.82033 0.97905 0.99940 1.22002 1.00808 0.96214 0.97293 1.21300 0.93508 0.95862 1.00595 1.20670 0.89873 0.91946 0.94489 1.42360 1.20140 1.43969 1.31119 1.19195 1.02404 1.11677 1.03773 0.91327 1.24721 0.97429 1.00422 0.98414 1.69636 1.13141 1.44837 1.30723 0.86269 0.77497 0.81682 0.80749 1.21307 1.21691 1.21315 1.21899 0.98037 0.98126 0.98342 1.21595 0.89782 0.90883 0.98651 1.20972 0.98828 0.94692 0.97422 1.20949 1.00217 0.94872 0.97466 0.92505 0.92519 0.92482 0.91152 0.91177 0.86295 0.86328 0.87983 0.87807 0.91011 0.89927 0.91760 0.89327 0.90987 0.96454 0.96383 0.78285 0.93501 0.91647 0.90702 0.89350 0.91627 0.86222 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.89 37.16 0.37 -0.64 16 2 C -0.08 -0.59 6.06 -27.88 -0.17 -0.76 16 3 C -0.09 -0.80 5.13 -104.62 -0.54 -1.34 16 4 C -0.12 -1.13 9.70 -39.58 -0.38 -1.52 16 5 C -0.10 -1.06 9.70 -39.58 -0.38 -1.44 16 6 C -0.07 -0.73 4.37 -104.63 -0.46 -1.19 16 7 C -0.10 -1.01 4.17 -29.04 -0.12 -1.14 16 8 C 0.52 6.68 7.69 -10.99 -0.08 6.60 16 9 O -0.54 -8.90 15.45 5.55 0.09 -8.81 16 10 N -0.61 -7.42 2.97 -172.52 -0.51 -7.94 16 11 C 0.10 1.15 6.37 -3.48 -0.02 1.12 16 12 C -0.12 -1.75 5.26 -26.39 -0.14 -1.89 16 13 C -0.09 -1.42 2.19 -90.58 -0.20 -1.62 16 14 C 0.16 3.09 5.65 -4.04 -0.02 3.07 16 15 N -0.73 -18.00 5.32 -59.91 -0.32 -18.32 16 16 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -27.72 13.06 55.49 0.72 -26.99 16 20 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C -0.13 -1.62 5.36 -26.63 -0.14 -1.77 16 25 C 0.11 1.40 6.43 -3.73 -0.02 1.37 16 26 C -0.10 -1.09 9.70 -39.58 -0.38 -1.47 16 27 C -0.12 -1.15 9.70 -39.58 -0.38 -1.54 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.43 8.08 -51.94 -0.42 0.01 16 32 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.10 0.79 7.88 -51.93 -0.41 0.39 16 36 H 0.10 0.87 7.65 -51.93 -0.40 0.48 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.09 1.42 7.15 -51.93 -0.37 1.05 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.38 9.75 6.84 -40.82 -0.28 9.47 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.09 1.16 7.01 -51.93 -0.36 0.80 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 51 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 407.11 15.07 6.14 6.14 Total: -1.00 -32.79 407.11 -11.10 -43.89 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -8.86 Total: 6.24 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -3.33 Total: -11.42 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.11 Total: -53.25 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.79 -11.10 -43.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206439716.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.712 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds