Wall clock time and date at job start Tue Mar 31 2020 16:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46640 * 2 1 4 4 C 1.38234 * 120.00257 * 90.00059 * 3 2 1 5 5 C 1.38238 * 119.99675 * 180.27927 * 4 3 2 6 6 C 1.38229 * 120.00124 * 359.45911 * 5 4 3 7 7 C 1.50699 * 120.00230 * 180.28369 * 6 5 4 8 8 C 1.50691 * 109.47261 * 270.27992 * 7 6 5 9 9 O 1.21285 * 119.99959 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00271 * 179.97438 * 8 7 6 11 11 C 1.46933 * 120.62935 * 359.72054 * 10 8 7 12 12 C 1.53625 * 108.54273 * 126.36871 * 11 10 8 13 13 C 1.53038 * 109.24381 * 54.85312 * 12 11 10 14 14 C 1.52998 * 109.45824 * 178.48875 * 13 12 11 15 15 N 1.46500 * 109.47220 * 295.07102 * 14 13 12 16 16 C 1.36934 * 120.00175 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00263 * 359.97438 * 16 15 14 18 18 C 1.38818 * 120.00061 * 180.02562 * 16 15 14 19 19 N 1.31613 * 120.00083 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99791 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47004 * 59.99796 * 20 18 16 22 22 H 1.48493 * 109.47001 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47399 * 300.00001 * 20 18 16 24 24 C 1.53033 * 109.53983 * 298.51267 * 13 12 11 25 25 C 1.46924 * 120.63127 * 179.97438 * 10 8 7 26 26 C 1.38234 * 119.99957 * 0.56005 * 6 5 4 27 27 C 1.38234 * 119.99503 * 270.01660 * 3 2 1 28 28 H 1.09007 * 109.46457 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47443 * 300.00009 * 1 2 3 30 30 H 1.09000 * 109.46671 * 60.00704 * 1 2 3 31 31 H 1.08988 * 109.47457 * 239.99524 * 2 1 3 32 32 H 1.09000 * 109.46671 * 119.99295 * 2 1 3 33 33 H 1.08002 * 119.99744 * 359.97438 * 4 3 2 34 34 H 1.08004 * 119.99577 * 179.72816 * 5 4 3 35 35 H 1.09007 * 109.47085 * 30.27493 * 7 6 5 36 36 H 1.08998 * 109.47270 * 150.26989 * 7 6 5 37 37 H 1.08996 * 109.58069 * 246.20141 * 11 10 8 38 38 H 1.09001 * 109.58301 * 6.61999 * 11 10 8 39 39 H 1.09003 * 109.63107 * 294.86074 * 12 11 10 40 40 H 1.08997 * 109.42669 * 174.72680 * 12 11 10 41 41 H 1.09005 * 109.44619 * 58.52311 * 13 12 11 42 42 H 1.08997 * 109.47472 * 55.06633 * 14 13 12 43 43 H 1.08998 * 109.47106 * 175.06911 * 14 13 12 44 44 H 0.97004 * 120.00177 * 0.02562 * 15 14 13 45 45 H 0.97002 * 120.00253 * 179.97438 * 19 18 16 46 46 H 1.09006 * 109.49587 * 301.41563 * 24 13 12 47 47 H 1.09000 * 109.52887 * 181.33368 * 24 13 12 48 48 H 1.08998 * 109.58869 * 353.38042 * 25 10 8 49 49 H 1.09004 * 109.58522 * 113.65931 * 25 10 8 50 50 H 1.08001 * 120.00274 * 179.72697 * 26 6 5 51 51 H 1.07997 * 120.00460 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7178 3.3779 1.1970 6 6 2.9533 4.0276 -0.0001 7 6 3.4556 5.4485 -0.0003 8 6 2.2835 6.3956 0.0002 9 8 1.1517 5.9598 0.0001 10 7 2.4930 7.7270 0.0007 11 6 3.8583 8.2701 0.0069 12 6 3.9986 9.2527 -1.1656 13 6 2.9001 10.3138 -1.0686 14 6 3.0580 11.3170 -2.2130 15 7 4.3186 12.0461 -2.0527 16 6 4.6766 13.0032 -2.9642 17 1 4.0299 13.2204 -3.8015 18 6 5.8713 13.6937 -2.8126 19 7 6.6597 13.4288 -1.7926 20 14 6.3599 14.9989 -4.0564 21 1 5.3289 16.0674 -4.0836 22 1 7.6689 15.5846 -3.6709 23 1 6.4700 14.3829 -5.4032 24 6 1.5289 9.6413 -1.1658 25 6 1.3605 8.6630 0.0006 26 6 2.7225 3.3761 -1.1973 27 6 2.2623 2.0726 -1.1972 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5138 -0.8898 32 1 1.8933 -0.5137 0.8901 33 1 2.0823 1.5636 2.1324 34 1 2.8936 3.8885 2.1323 35 1 4.0614 5.6197 0.8896 36 1 4.0609 5.6197 -0.8904 37 1 4.0401 8.7905 0.9472 38 1 4.5753 7.4571 -0.1078 39 1 3.9020 8.7141 -2.1083 40 1 4.9751 9.7347 -1.1198 41 1 2.9821 10.8350 -0.1148 42 1 3.0646 10.7850 -3.1643 43 1 2.2263 12.0212 -2.1962 44 1 4.8997 11.8508 -1.3010 45 1 7.4947 13.9110 -1.6868 46 1 1.4556 9.0990 -2.1085 47 1 0.7471 10.3995 -1.1205 48 1 0.4290 8.1095 -0.1183 49 1 1.3410 9.2131 0.9414 50 1 2.9023 3.8852 -2.1326 51 1 2.0817 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206439716.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:24 Heat of formation + Delta-G solvation = -38.985573 kcal Electronic energy + Delta-G solvation = -27560.681985 eV Core-core repulsion = 23844.252767 eV Total energy + Delta-G solvation = -3716.429218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.41587 -40.20741 -38.82769 -36.53418 -35.54110 -34.48793 -32.86264 -31.96749 -31.79383 -31.65407 -28.70950 -27.67024 -25.51516 -24.38971 -24.14090 -23.62990 -23.08863 -21.72736 -21.22091 -19.94913 -19.14259 -18.13729 -17.31278 -16.89756 -16.70295 -16.56167 -16.06813 -15.92451 -15.61479 -15.40947 -15.31147 -14.89881 -14.70113 -14.54931 -14.40495 -14.16628 -13.99346 -13.95172 -13.85364 -13.56166 -13.12013 -12.94933 -12.89698 -12.74713 -12.71970 -12.60406 -12.23012 -12.16488 -12.06195 -11.94620 -11.70350 -11.67553 -11.64524 -11.47999 -11.31124 -10.91941 -10.82137 -9.78087 -9.63976 -9.39802 -8.97055 -7.94000 -5.21681 0.40926 0.54520 1.48141 1.50333 1.56580 1.62525 2.03674 2.56970 2.86326 3.39233 3.62749 3.71176 3.77464 3.85039 3.89716 3.95748 3.98451 4.15236 4.15945 4.19913 4.30217 4.39883 4.44730 4.46250 4.51764 4.57500 4.60322 4.60691 4.73574 4.74595 4.77595 4.82384 4.86356 4.97200 5.04941 5.05253 5.07537 5.07926 5.17628 5.19405 5.24094 5.31515 5.37959 5.48265 5.52769 5.54849 5.60883 5.69659 5.75240 6.14930 6.28752 6.42481 7.17361 7.35742 8.11907 8.36660 9.28928 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026609 B = 0.001901 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.017054 B =14723.558473 C =15014.125069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.092 4.092 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.084 4.084 7 C -0.098 4.098 8 C 0.515 3.485 9 O -0.580 6.580 10 N -0.609 5.609 11 C 0.111 3.889 12 C -0.120 4.120 13 C -0.084 4.084 14 C 0.157 3.843 15 N -0.741 5.741 16 C -0.249 4.249 17 H 0.070 0.930 18 C -0.072 4.072 19 N -0.965 5.965 20 Si 0.971 3.029 21 H -0.280 1.280 22 H -0.294 1.294 23 H -0.280 1.280 24 C -0.115 4.115 25 C 0.115 3.885 26 C -0.119 4.119 27 C -0.129 4.129 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.013 0.987 43 H 0.016 0.984 44 H 0.377 0.623 45 H 0.252 0.748 46 H 0.059 0.941 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.078 0.922 50 H 0.123 0.877 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.684 -25.872 7.071 28.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.092 4.092 4 C -0.145 4.145 5 C -0.133 4.133 6 C -0.084 4.084 7 C -0.138 4.138 8 C 0.305 3.695 9 O -0.460 6.460 10 N -0.342 5.342 11 C -0.011 4.011 12 C -0.158 4.158 13 C -0.103 4.103 14 C 0.030 3.970 15 N -0.384 5.384 16 C -0.381 4.381 17 H 0.088 0.912 18 C -0.264 4.264 19 N -0.616 5.616 20 Si 0.800 3.200 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.206 1.206 24 C -0.153 4.153 25 C -0.007 4.007 26 C -0.137 4.137 27 C -0.147 4.147 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.031 0.969 43 H 0.034 0.966 44 H 0.210 0.790 45 H 0.060 0.940 46 H 0.077 0.923 47 H 0.103 0.897 48 H 0.099 0.901 49 H 0.096 0.904 50 H 0.141 0.859 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.307 -25.988 6.919 28.458 hybrid contribution 0.573 1.260 -0.583 1.503 sum -8.734 -24.728 6.336 26.979 Atomic orbital electron populations 1.21741 0.94655 1.02338 1.01583 1.20575 0.96164 0.91467 1.03726 1.20195 0.98597 0.97391 0.93043 1.21232 1.00059 0.94874 0.98362 1.21194 0.99206 0.95227 0.97709 1.19477 1.00467 0.94612 0.93852 1.20767 0.96052 0.89815 1.07134 1.21007 0.90885 0.82638 0.74980 1.90680 1.26114 1.77405 1.51782 1.48261 1.08187 1.05225 1.72485 1.22022 0.82024 0.98155 0.98920 1.21896 0.99051 0.96313 0.98574 1.21185 0.95369 0.95273 0.98458 1.20812 0.87632 0.92408 0.96142 1.42521 1.21597 1.43903 1.30364 1.19575 1.02405 1.11964 1.04117 0.91155 1.25497 0.97704 1.02798 1.00414 1.69780 1.13381 1.46003 1.32410 0.85260 0.76870 0.79223 0.78684 1.20627 1.21982 1.20584 1.21793 0.96785 0.98278 0.98473 1.21553 0.89737 0.90668 0.98776 1.21186 0.99415 0.95337 0.97758 1.21211 1.00159 0.94877 0.98427 0.90889 0.93253 0.93433 0.90200 0.89987 0.84616 0.85271 0.85565 0.86278 0.89904 0.87156 0.92250 0.91505 0.91211 0.96878 0.96607 0.79050 0.93963 0.92258 0.89743 0.90146 0.90359 0.85877 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.89 71.98 0.71 -1.10 16 2 C -0.08 -1.02 6.06 29.85 0.18 -0.84 16 3 C -0.09 -1.64 5.13 -19.87 -0.10 -1.74 16 4 C -0.13 -2.31 9.70 22.27 0.22 -2.09 16 5 C -0.12 -2.28 9.70 22.27 0.22 -2.06 16 6 C -0.08 -1.75 4.37 -19.87 -0.09 -1.83 16 7 C -0.10 -1.74 4.17 29.10 0.12 -1.62 16 8 C 0.52 12.63 7.69 87.65 0.67 13.31 16 9 O -0.58 -18.86 15.45 -3.04 -0.05 -18.91 16 10 N -0.61 -13.79 2.97 -818.12 -2.43 -16.21 16 11 C 0.11 2.21 6.37 86.51 0.55 2.76 16 12 C -0.12 -3.25 5.26 30.82 0.16 -3.09 16 13 C -0.08 -2.49 2.19 -10.77 -0.02 -2.51 16 14 C 0.16 6.11 5.65 86.38 0.49 6.60 16 15 N -0.74 -36.68 5.32 -343.46 -1.83 -38.50 16 16 C -0.25 -13.81 9.99 84.04 0.84 -12.97 16 17 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 18 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 19 N -0.97 -57.67 13.06 21.65 0.28 -57.39 16 20 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 C -0.11 -2.84 5.36 30.66 0.16 -2.68 16 25 C 0.12 2.68 6.43 86.35 0.55 3.24 16 26 C -0.12 -2.50 9.70 22.27 0.22 -2.28 16 27 C -0.13 -2.46 9.70 22.27 0.22 -2.24 16 28 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 32 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 33 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.13 1.60 7.88 -2.38 -0.02 1.58 16 36 H 0.12 1.73 7.65 -2.39 -0.02 1.71 16 37 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.11 1.62 5.93 -2.39 -0.01 1.60 16 39 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 2.14 7.15 -2.39 -0.02 2.12 16 41 H 0.07 2.12 8.14 -2.38 -0.02 2.11 16 42 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.38 19.42 6.84 -92.71 -0.63 18.79 16 45 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 46 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 47 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.08 2.06 7.01 -2.39 -0.02 2.04 16 49 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 50 H 0.12 2.35 8.06 -2.91 -0.02 2.32 16 51 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -70.33 407.11 3.84 -66.49 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.26 Total: 31.56 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 5.57 Total: -14.74 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -3.97 Total: -112.11 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.05 Total: -18.91 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -70.33 3.84 -66.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206439716.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.505 kcal (2) G-P(sol) polarization free energy of solvation -70.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds