Wall clock time and date at job start Tue Mar 31 2020 16:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38231 * 119.99884 * 269.72543 * 3 2 1 5 5 C 1.38242 * 119.99966 * 179.78958 * 4 3 2 6 6 C 1.38236 * 119.99616 * 0.46904 * 5 4 3 7 7 C 1.50696 * 119.99811 * 179.78965 * 6 5 4 8 8 C 1.52997 * 109.47365 * 269.97215 * 7 6 5 9 9 C 1.50696 * 109.47365 * 180.02562 * 8 7 6 10 10 O 1.21280 * 120.00076 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99724 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99839 * 179.97438 * 11 9 8 13 13 H 1.09003 * 110.63477 * 34.30136 * 12 11 9 14 14 C 1.54321 * 110.72179 * 271.15676 * 12 11 9 15 15 N 1.47022 * 107.27126 * 219.44351 * 14 12 11 16 16 C 1.36935 * 125.64663 * 178.90866 * 15 14 12 17 17 H 1.07998 * 119.99568 * 180.02562 * 16 15 14 18 18 C 1.38812 * 120.00106 * 0.02562 * 16 15 14 19 19 N 1.31616 * 119.99876 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99992 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46938 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46869 * 120.00047 * 20 18 16 23 23 H 1.48497 * 109.46888 * 240.00112 * 20 18 16 24 24 C 1.47423 * 108.70410 * 358.94017 * 15 14 12 25 25 C 1.55129 * 104.94083 * 24.00496 * 24 15 14 26 26 H 1.08998 * 110.93688 * 81.21431 * 25 24 15 27 27 C 1.52999 * 111.15999 * 205.13299 * 25 24 15 28 28 C 1.38238 * 120.00150 * 359.76070 * 6 5 4 29 29 C 1.38235 * 119.99982 * 0.02871 * 28 6 5 30 30 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 31 31 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 33 33 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 34 34 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 35 35 H 1.07997 * 120.00101 * 0.02562 * 4 3 2 36 36 H 1.07997 * 120.00136 * 180.25082 * 5 4 3 37 37 H 1.08997 * 109.47191 * 29.97990 * 7 6 5 38 38 H 1.09006 * 109.47275 * 149.97385 * 7 6 5 39 39 H 1.09000 * 109.47345 * 300.00980 * 8 7 6 40 40 H 1.09006 * 109.46785 * 59.99870 * 8 7 6 41 41 H 0.96995 * 120.00596 * 359.97438 * 11 9 8 42 42 H 1.08996 * 109.88268 * 338.85969 * 14 12 11 43 43 H 1.09001 * 109.88052 * 100.02768 * 14 12 11 44 44 H 0.97001 * 120.00034 * 180.02562 * 19 18 16 45 45 H 1.08998 * 110.36671 * 142.96334 * 24 15 14 46 46 H 1.09000 * 110.36810 * 265.29309 * 24 15 14 47 47 H 1.09002 * 109.46955 * 172.17384 * 27 25 24 48 48 H 1.09004 * 109.47376 * 292.16522 * 27 25 24 49 49 H 1.08999 * 109.47650 * 52.16708 * 27 25 24 50 50 H 1.08004 * 119.99883 * 180.02562 * 28 6 5 51 51 H 1.07997 * 119.99929 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7247 3.3754 -1.1972 6 6 2.9547 4.0272 0.0000 7 6 3.4570 5.4479 0.0000 8 6 4.9870 5.4481 0.0011 9 6 5.4893 6.8689 0.0018 10 8 4.7011 7.7907 0.0018 11 7 6.8143 7.1151 0.0022 12 6 7.3027 8.4964 0.0023 13 1 6.6360 9.1395 0.5768 14 6 7.4578 9.0208 -1.4408 15 7 8.6875 9.8254 -1.4831 16 6 9.1940 10.4514 -2.5906 17 1 10.1085 11.0211 -2.5180 18 6 8.5318 10.3537 -3.8067 19 7 7.4169 9.6598 -3.8951 20 14 9.2230 11.2072 -5.3178 21 1 10.4768 11.9158 -4.9559 22 1 9.5111 10.1976 -6.3681 23 1 8.2310 12.1859 -5.8307 24 6 9.2856 9.8459 -0.1357 25 6 8.7490 8.5672 0.5596 26 1 9.3255 7.6912 0.2625 27 6 8.7431 8.7271 2.0812 28 6 2.7235 3.3758 1.1972 29 6 2.2627 2.0725 1.1972 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0919 1.5601 -2.1324 36 1 2.9050 3.8844 -2.1325 37 1 3.0942 5.9616 -0.8903 38 1 3.0930 5.9620 0.8897 39 1 5.3498 4.9343 0.8914 40 1 5.3510 4.9340 -0.8885 41 1 7.4447 6.3779 0.0025 42 1 7.5391 8.1828 -2.1330 43 1 6.6003 9.6401 -1.7043 44 1 6.9544 9.5912 -4.7449 45 1 10.3730 9.8143 -0.2029 46 1 8.9638 10.7337 0.4087 47 1 8.2355 7.8754 2.5340 48 1 9.7693 8.7741 2.4456 49 1 8.2204 9.6456 2.3481 50 1 2.9028 3.8852 2.1325 51 1 2.0825 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210966914.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:12 Heat of formation + Delta-G solvation = -13.251110 kcal Electronic energy + Delta-G solvation = -27503.728184 eV Core-core repulsion = 23788.414895 eV Total energy + Delta-G solvation = -3715.313288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.89421 -39.32971 -37.52753 -35.25436 -33.84428 -32.70738 -32.41520 -31.05974 -30.35966 -29.20169 -27.60574 -25.66062 -25.05539 -23.56864 -22.87033 -22.58181 -20.74356 -20.36845 -19.92220 -19.40416 -16.94889 -16.85825 -16.07704 -16.02210 -15.78071 -15.19680 -15.06697 -14.79215 -14.14178 -13.96738 -13.85803 -13.68794 -13.51431 -13.29287 -13.14030 -12.83493 -12.77924 -12.68801 -12.42476 -12.00142 -11.90259 -11.68684 -11.60390 -11.57744 -11.32598 -11.14066 -11.01180 -10.94128 -10.84473 -10.78454 -10.57066 -10.34861 -9.95798 -9.89987 -9.69660 -9.43152 -9.05320 -8.62641 -8.59836 -8.41424 -6.81408 -5.67535 -3.02702 1.17891 1.27196 3.04689 3.41262 3.46210 3.49125 3.49634 3.69472 4.49040 4.51838 4.58116 4.75263 4.85517 4.87234 5.04087 5.04816 5.09078 5.14894 5.23709 5.29760 5.32878 5.37803 5.39115 5.46504 5.56417 5.57455 5.62708 5.66372 5.77471 5.81196 5.83124 5.92891 6.00470 6.01281 6.01825 6.16547 6.19380 6.22405 6.29777 6.37533 6.45418 6.51710 6.56839 6.64280 6.82867 6.88418 6.97142 7.59668 7.61770 7.87417 7.97621 8.27717 8.66249 9.23643 9.84310 10.49414 11.43082 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015585 B = 0.002203 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.195614 B =12709.476849 C =14062.372461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.091 4.091 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.081 4.081 7 C -0.066 4.066 8 C -0.133 4.133 9 C 0.511 3.489 10 O -0.540 6.540 11 N -0.714 5.714 12 C 0.120 3.880 13 H 0.086 0.914 14 C 0.174 3.826 15 N -0.606 5.606 16 C -0.229 4.229 17 H 0.079 0.921 18 C -0.009 4.009 19 N -0.918 5.918 20 Si 0.912 3.088 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.141 3.859 25 C -0.114 4.114 26 H 0.076 0.924 27 C -0.136 4.136 28 C -0.114 4.114 29 C -0.118 4.118 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.395 0.605 42 H 0.050 0.950 43 H 0.047 0.953 44 H 0.251 0.749 45 H 0.041 0.959 46 H 0.021 0.979 47 H 0.050 0.950 48 H 0.053 0.947 49 H 0.055 0.945 50 H 0.121 0.879 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.643 -18.950 11.985 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.134 4.134 5 C -0.130 4.130 6 C -0.081 4.081 7 C -0.103 4.103 8 C -0.173 4.173 9 C 0.297 3.703 10 O -0.417 6.417 11 N -0.364 5.364 12 C 0.015 3.985 13 H 0.104 0.896 14 C 0.048 3.952 15 N -0.333 5.333 16 C -0.358 4.358 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.566 5.566 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.014 3.986 25 C -0.134 4.134 26 H 0.095 0.905 27 C -0.194 4.194 28 C -0.132 4.132 29 C -0.136 4.136 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.229 0.771 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.039 0.961 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.139 0.861 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.268 -18.234 11.753 23.590 hybrid contribution 0.676 0.052 -0.953 1.169 sum -8.592 -18.182 10.800 22.827 Atomic orbital electron populations 1.21751 0.94813 1.01576 1.02276 1.20532 0.96133 0.92821 1.02693 1.19871 0.99728 0.96222 0.93298 1.21015 1.00047 0.94919 0.97445 1.21131 0.99254 0.94701 0.97925 1.19964 0.98856 0.96163 0.93132 1.20337 0.93483 0.91867 1.04659 1.21627 0.96702 0.94641 1.04328 1.20541 0.82524 0.91199 0.76085 1.90707 1.55197 1.46434 1.49405 1.45954 1.06699 1.08921 1.74871 1.22477 0.93823 0.81919 1.00277 0.89579 1.21469 0.89517 0.95125 0.89101 1.44421 1.25200 1.59570 1.04102 1.19097 1.05863 1.24812 0.85984 0.90284 1.24839 0.97420 1.00477 0.97825 1.69990 1.17757 1.44481 1.24340 0.86044 0.77980 0.78696 0.83040 1.20504 1.21815 1.21747 1.21620 0.96494 0.93488 0.86968 1.22648 0.95978 1.00225 0.94582 0.90528 1.21688 1.01197 1.01463 0.95075 1.21062 0.99727 0.94735 0.97693 1.20980 1.00283 0.94937 0.97373 0.92532 0.92510 0.92579 0.91144 0.91194 0.86275 0.85823 0.89947 0.90252 0.89253 0.88894 0.77139 0.93221 0.93495 0.93813 0.94026 0.96099 0.93139 0.92832 0.92621 0.86076 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.08 -0.57 6.07 -27.88 -0.17 -0.74 16 3 C -0.09 -0.82 5.13 -104.62 -0.54 -1.35 16 4 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 5 C -0.11 -1.18 9.70 -39.58 -0.38 -1.56 16 6 C -0.08 -0.88 5.13 -104.62 -0.54 -1.41 16 7 C -0.07 -0.79 4.63 -27.89 -0.13 -0.92 16 8 C -0.13 -1.56 5.68 -27.89 -0.16 -1.72 16 9 C 0.51 8.34 7.83 -10.99 -0.09 8.25 16 10 O -0.54 -11.18 15.67 5.56 0.09 -11.09 16 11 N -0.71 -11.36 5.12 -52.03 -0.27 -11.62 16 12 C 0.12 2.31 2.74 -66.09 -0.18 2.13 16 13 H 0.09 1.78 7.52 -51.93 -0.39 1.39 16 14 C 0.17 4.36 5.13 -3.07 -0.02 4.34 16 15 N -0.61 -15.69 3.40 -169.94 -0.58 -16.27 16 16 C -0.23 -6.48 10.28 -15.06 -0.15 -6.64 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.73 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -27.74 10.31 55.49 0.57 -27.17 16 20 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 C 0.14 2.89 6.72 -2.41 -0.02 2.87 16 25 C -0.11 -1.91 3.27 -88.35 -0.29 -2.20 16 26 H 0.08 1.22 8.00 -51.93 -0.42 0.81 16 27 C -0.14 -1.82 9.31 37.16 0.35 -1.47 16 28 C -0.11 -1.12 9.70 -39.58 -0.38 -1.50 16 29 C -0.12 -1.06 9.70 -39.58 -0.38 -1.45 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 38 H 0.08 0.97 8.04 -51.93 -0.42 0.56 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.40 5.09 8.54 -40.82 -0.35 4.74 16 42 H 0.05 1.37 7.27 -51.93 -0.38 0.99 16 43 H 0.05 1.38 7.51 -51.93 -0.39 0.99 16 44 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.02 0.43 7.99 -51.93 -0.41 0.02 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 50 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 51 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 412.13 15.07 6.21 6.21 Total: -1.00 -33.67 412.13 -11.24 -44.91 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -9.05 Total: 3.36 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -3.19 Total: -5.77 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.27 Total: -55.06 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.67 -11.24 -44.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210966914.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.660 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds