Wall clock time and date at job start Tue Mar 31 2020 16:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38231 * 119.99884 * 269.72543 * 3 2 1 5 5 C 1.38242 * 119.99966 * 179.78958 * 4 3 2 6 6 C 1.38236 * 119.99616 * 0.46904 * 5 4 3 7 7 C 1.50696 * 119.99811 * 179.78965 * 6 5 4 8 8 C 1.52997 * 109.47365 * 269.97215 * 7 6 5 9 9 C 1.50696 * 109.47365 * 180.02562 * 8 7 6 10 10 O 1.21280 * 120.00076 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99724 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99839 * 179.97438 * 11 9 8 13 13 H 1.09003 * 110.63477 * 34.30136 * 12 11 9 14 14 C 1.54321 * 110.72179 * 271.15676 * 12 11 9 15 15 N 1.47022 * 107.27126 * 219.44351 * 14 12 11 16 16 C 1.36935 * 125.64663 * 178.90866 * 15 14 12 17 17 H 1.07998 * 119.99568 * 180.02562 * 16 15 14 18 18 C 1.38812 * 120.00106 * 0.02562 * 16 15 14 19 19 N 1.31616 * 119.99876 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99992 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46938 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46869 * 120.00047 * 20 18 16 23 23 H 1.48497 * 109.46888 * 240.00112 * 20 18 16 24 24 C 1.47423 * 108.70410 * 358.94017 * 15 14 12 25 25 C 1.55129 * 104.94083 * 24.00496 * 24 15 14 26 26 H 1.08998 * 110.93688 * 81.21431 * 25 24 15 27 27 C 1.52999 * 111.15999 * 205.13299 * 25 24 15 28 28 C 1.38238 * 120.00150 * 359.76070 * 6 5 4 29 29 C 1.38235 * 119.99982 * 0.02871 * 28 6 5 30 30 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 31 31 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 33 33 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 34 34 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 35 35 H 1.07997 * 120.00101 * 0.02562 * 4 3 2 36 36 H 1.07997 * 120.00136 * 180.25082 * 5 4 3 37 37 H 1.08997 * 109.47191 * 29.97990 * 7 6 5 38 38 H 1.09006 * 109.47275 * 149.97385 * 7 6 5 39 39 H 1.09000 * 109.47345 * 300.00980 * 8 7 6 40 40 H 1.09006 * 109.46785 * 59.99870 * 8 7 6 41 41 H 0.96995 * 120.00596 * 359.97438 * 11 9 8 42 42 H 1.08996 * 109.88268 * 338.85969 * 14 12 11 43 43 H 1.09001 * 109.88052 * 100.02768 * 14 12 11 44 44 H 0.97001 * 120.00034 * 180.02562 * 19 18 16 45 45 H 1.08998 * 110.36671 * 142.96334 * 24 15 14 46 46 H 1.09000 * 110.36810 * 265.29309 * 24 15 14 47 47 H 1.09002 * 109.46955 * 172.17384 * 27 25 24 48 48 H 1.09004 * 109.47376 * 292.16522 * 27 25 24 49 49 H 1.08999 * 109.47650 * 52.16708 * 27 25 24 50 50 H 1.08004 * 119.99883 * 180.02562 * 28 6 5 51 51 H 1.07997 * 119.99929 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7247 3.3754 -1.1972 6 6 2.9547 4.0272 0.0000 7 6 3.4570 5.4479 0.0000 8 6 4.9870 5.4481 0.0011 9 6 5.4893 6.8689 0.0018 10 8 4.7011 7.7907 0.0018 11 7 6.8143 7.1151 0.0022 12 6 7.3027 8.4964 0.0023 13 1 6.6360 9.1395 0.5768 14 6 7.4578 9.0208 -1.4408 15 7 8.6875 9.8254 -1.4831 16 6 9.1940 10.4514 -2.5906 17 1 10.1085 11.0211 -2.5180 18 6 8.5318 10.3537 -3.8067 19 7 7.4169 9.6598 -3.8951 20 14 9.2230 11.2072 -5.3178 21 1 10.4768 11.9158 -4.9559 22 1 9.5111 10.1976 -6.3681 23 1 8.2310 12.1859 -5.8307 24 6 9.2856 9.8459 -0.1357 25 6 8.7490 8.5672 0.5596 26 1 9.3255 7.6912 0.2625 27 6 8.7431 8.7271 2.0812 28 6 2.7235 3.3758 1.1972 29 6 2.2627 2.0725 1.1972 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0919 1.5601 -2.1324 36 1 2.9050 3.8844 -2.1325 37 1 3.0942 5.9616 -0.8903 38 1 3.0930 5.9620 0.8897 39 1 5.3498 4.9343 0.8914 40 1 5.3510 4.9340 -0.8885 41 1 7.4447 6.3779 0.0025 42 1 7.5391 8.1828 -2.1330 43 1 6.6003 9.6401 -1.7043 44 1 6.9544 9.5912 -4.7449 45 1 10.3730 9.8143 -0.2029 46 1 8.9638 10.7337 0.4087 47 1 8.2355 7.8754 2.5340 48 1 9.7693 8.7741 2.4456 49 1 8.2204 9.6456 2.3481 50 1 2.9028 3.8852 2.1325 51 1 2.0825 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210966914.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:11 Heat of formation + Delta-G solvation = -32.414175 kcal Electronic energy + Delta-G solvation = -27504.559157 eV Core-core repulsion = 23788.414895 eV Total energy + Delta-G solvation = -3716.144261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.06841 -40.34215 -39.13441 -36.04453 -35.59165 -34.26980 -33.33932 -32.17435 -31.77774 -30.23993 -29.10112 -27.39154 -26.11695 -25.05207 -23.59091 -23.46177 -22.22152 -21.53397 -21.28170 -20.78873 -18.90228 -18.12263 -17.37320 -17.01931 -16.82219 -16.75208 -16.04102 -15.95235 -15.62248 -15.43577 -14.74982 -14.63567 -14.57735 -14.32975 -14.26567 -14.12221 -13.97263 -13.93965 -13.57771 -13.34366 -13.23972 -13.05173 -12.90877 -12.66749 -12.61876 -12.36303 -12.28616 -12.14839 -12.01794 -11.87222 -11.86503 -11.65050 -11.63922 -11.59476 -11.45682 -10.84884 -10.76864 -9.96136 -9.78386 -9.37437 -8.94129 -7.86342 -5.24365 0.43305 0.54048 1.42870 1.44897 1.55332 1.71218 2.25161 2.48339 2.86937 3.31748 3.55412 3.71057 3.79020 3.90440 3.94452 4.05654 4.07078 4.11926 4.15488 4.19766 4.33647 4.39155 4.51425 4.54228 4.61648 4.63614 4.67375 4.69406 4.73315 4.75235 4.87792 4.96452 5.06367 5.07673 5.08999 5.11059 5.12233 5.23516 5.26760 5.27385 5.31630 5.40735 5.43987 5.49667 5.56879 5.63102 5.76941 5.78243 5.79846 6.15226 6.16491 6.65515 7.05104 7.36507 7.74231 8.38108 9.22924 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015585 B = 0.002203 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.195614 B =12709.476849 C =14062.372461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.125 4.125 5 C -0.127 4.127 6 C -0.092 4.092 7 C -0.060 4.060 8 C -0.119 4.119 9 C 0.506 3.494 10 O -0.590 6.590 11 N -0.704 5.704 12 C 0.135 3.865 13 H 0.070 0.930 14 C 0.189 3.811 15 N -0.628 5.628 16 C -0.240 4.240 17 H 0.089 0.911 18 C -0.073 4.073 19 N -0.953 5.953 20 Si 0.982 3.018 21 H -0.260 1.260 22 H -0.291 1.291 23 H -0.296 1.296 24 C 0.131 3.869 25 C -0.093 4.093 26 H 0.093 0.907 27 C -0.128 4.128 28 C -0.118 4.118 29 C -0.121 4.121 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.131 0.869 36 H 0.120 0.880 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.414 0.586 42 H 0.017 0.983 43 H -0.013 1.013 44 H 0.244 0.756 45 H 0.056 0.944 46 H 0.024 0.976 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.049 0.951 50 H 0.135 0.865 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.268 -21.152 13.955 26.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.143 4.143 5 C -0.145 4.145 6 C -0.092 4.092 7 C -0.098 4.098 8 C -0.158 4.158 9 C 0.294 3.706 10 O -0.470 6.470 11 N -0.355 5.355 12 C 0.029 3.971 13 H 0.088 0.912 14 C 0.062 3.938 15 N -0.355 5.355 16 C -0.369 4.369 17 H 0.107 0.893 18 C -0.266 4.266 19 N -0.602 5.602 20 Si 0.810 3.190 21 H -0.184 1.184 22 H -0.218 1.218 23 H -0.224 1.224 24 C 0.006 3.994 25 C -0.113 4.113 26 H 0.111 0.889 27 C -0.186 4.186 28 C -0.136 4.136 29 C -0.139 4.139 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.142 0.858 40 H 0.123 0.877 41 H 0.251 0.749 42 H 0.035 0.965 43 H 0.005 0.995 44 H 0.053 0.947 45 H 0.074 0.926 46 H 0.042 0.958 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.068 0.932 50 H 0.152 0.848 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.843 -20.463 13.765 25.879 hybrid contribution 0.217 0.751 -1.552 1.737 sum -7.626 -19.713 12.213 24.411 Atomic orbital electron populations 1.21741 0.94453 1.02337 1.01771 1.20581 0.96344 0.91507 1.03629 1.20191 0.98825 0.97270 0.93030 1.21218 0.99945 0.94602 0.98506 1.21228 1.00028 0.95426 0.97855 1.19844 1.00178 0.95364 0.93862 1.20208 0.93686 0.92703 1.03158 1.21616 0.96407 0.91351 1.06452 1.21418 0.82061 0.92662 0.74459 1.90691 1.56399 1.48445 1.51508 1.45811 1.07231 1.08090 1.74367 1.22024 0.95673 0.83370 0.96067 0.91157 1.21110 0.87426 0.92963 0.92307 1.44745 1.25658 1.59335 1.05735 1.19564 1.05956 1.24426 0.86973 0.89321 1.25765 0.97951 1.01758 1.01093 1.70254 1.19281 1.46281 1.24407 0.84958 0.77710 0.77375 0.78989 1.18425 1.21762 1.22369 1.21904 0.97172 0.95608 0.84706 1.22571 0.93183 0.98759 0.96800 0.88915 1.21642 1.03054 1.02087 0.91773 1.21247 0.99476 0.95196 0.97696 1.21267 0.99594 0.94692 0.98343 0.93286 0.91143 0.92853 0.90513 0.89991 0.85064 0.86237 0.92485 0.90826 0.85759 0.87726 0.74916 0.96455 0.99501 0.94696 0.92619 0.95839 0.91188 0.90344 0.93199 0.84757 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 71.98 0.71 -0.83 16 2 C -0.08 -0.94 6.07 29.85 0.18 -0.76 16 3 C -0.09 -1.50 5.13 -19.86 -0.10 -1.60 16 4 C -0.12 -2.26 9.70 22.27 0.22 -2.05 16 5 C -0.13 -2.67 9.70 22.27 0.22 -2.46 16 6 C -0.09 -1.95 5.13 -19.87 -0.10 -2.05 16 7 C -0.06 -1.45 4.63 29.85 0.14 -1.32 16 8 C -0.12 -2.68 5.68 29.85 0.17 -2.51 16 9 C 0.51 16.68 7.83 87.66 0.69 17.37 16 10 O -0.59 -25.62 15.67 -3.03 -0.05 -25.66 16 11 N -0.70 -22.05 5.12 -436.91 -2.24 -24.28 16 12 C 0.14 5.25 2.74 46.18 0.13 5.38 16 13 H 0.07 2.99 7.52 -2.39 -0.02 2.97 16 14 C 0.19 9.95 5.13 86.73 0.44 10.39 16 15 N -0.63 -33.26 3.40 -691.57 -2.35 -35.61 16 16 C -0.24 -13.81 10.28 84.03 0.86 -12.95 16 17 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 18 C -0.07 -4.33 5.49 84.86 0.47 -3.86 16 19 N -0.95 -60.54 10.31 21.65 0.22 -60.31 16 20 Si 0.98 47.22 29.55 68.60 2.03 49.25 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 23 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 24 C 0.13 5.26 6.72 86.93 0.58 5.84 16 25 C -0.09 -2.94 3.27 -9.33 -0.03 -2.97 16 26 H 0.09 2.66 8.00 -2.39 -0.02 2.65 16 27 C -0.13 -2.96 9.31 71.98 0.67 -2.29 16 28 C -0.12 -2.12 9.70 22.27 0.22 -1.90 16 29 C -0.12 -1.92 9.70 22.27 0.22 -1.70 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 34 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 35 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.06 1.65 8.04 -2.39 -0.02 1.63 16 38 H 0.07 1.85 8.04 -2.38 -0.02 1.83 16 39 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 41 H 0.41 9.83 8.54 -92.71 -0.79 9.04 16 42 H 0.02 1.01 7.27 -2.39 -0.02 0.99 16 43 H -0.01 -0.85 7.51 -2.39 -0.02 -0.86 16 44 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 45 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.02 0.95 7.99 -2.39 -0.02 0.93 16 47 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 49 H 0.05 1.23 8.08 -2.39 -0.02 1.21 16 50 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 51 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -78.41 412.13 3.39 -75.02 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.10 Total: 21.86 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 5.67 Total: -0.26 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -4.36 Total: -120.20 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.05 Total: -25.66 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -78.41 3.39 -75.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210966914.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.602 kcal (2) G-P(sol) polarization free energy of solvation -78.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds