Wall clock time and date at job start Tue Mar 31 2020 16:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47365 * 2 1 4 4 C 1.50705 * 109.47358 * 240.00078 * 2 1 3 5 5 H 1.08002 * 119.99357 * 237.00921 * 4 2 1 6 6 C 1.37869 * 120.00009 * 57.00645 * 4 2 1 7 7 N 1.31511 * 120.00203 * 5.54464 * 6 4 2 8 8 Si 1.86804 * 119.99986 * 185.54218 * 6 4 2 9 9 H 1.48507 * 109.46918 * 85.00037 * 8 6 4 10 10 H 1.48493 * 109.47223 * 204.99854 * 8 6 4 11 11 H 1.48494 * 109.47130 * 325.00333 * 8 6 4 12 12 C 1.52999 * 109.47047 * 120.00126 * 2 1 3 13 13 N 1.46504 * 109.46798 * 299.99956 * 12 2 1 14 14 C 1.34774 * 119.99686 * 179.97438 * 13 12 2 15 15 O 1.21581 * 120.00524 * 0.02562 * 14 13 12 16 16 N 1.34785 * 119.99883 * 179.97438 * 14 13 12 17 17 C 1.46493 * 119.99989 * 179.97438 * 16 14 13 18 18 H 1.09005 * 115.55471 * 350.67894 * 17 16 14 19 19 C 1.53005 * 117.49620 * 136.37694 * 17 16 14 20 20 H 1.08995 * 117.50182 * 0.02562 * 19 17 16 21 21 C 1.50705 * 117.49797 * 214.97829 * 19 17 16 22 22 C 1.38230 * 120.00293 * 351.10726 * 21 19 17 23 23 C 1.38233 * 119.99944 * 179.78664 * 22 21 19 24 24 C 1.38228 * 119.99986 * 0.46351 * 23 22 21 25 25 C 1.38231 * 120.00075 * 359.77178 * 24 23 22 26 26 C 1.38231 * 120.00258 * 0.02562 * 25 24 23 27 27 C 1.52997 * 117.49896 * 205.00005 * 17 16 14 28 28 C 1.52996 * 117.50015 * 0.02562 * 27 17 16 29 29 C 1.53001 * 117.49880 * 145.00105 * 27 17 16 30 30 H 1.08992 * 109.47104 * 293.93386 * 1 2 3 31 31 H 1.09001 * 109.46925 * 53.93845 * 1 2 3 32 32 H 1.09001 * 109.47130 * 173.92779 * 1 2 3 33 33 H 1.09000 * 109.47256 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47408 * 299.99836 * 3 2 1 35 35 H 1.09004 * 109.47029 * 59.99741 * 3 2 1 36 36 H 0.97001 * 120.00124 * 180.02562 * 7 6 4 37 37 H 1.09000 * 109.47258 * 180.02562 * 12 2 1 38 38 H 1.09000 * 109.47215 * 59.99772 * 12 2 1 39 39 H 0.96992 * 120.00134 * 359.97438 * 13 12 2 40 40 H 0.96999 * 119.99504 * 359.97438 * 16 14 13 41 41 H 1.08004 * 119.99682 * 0.02562 * 22 21 19 42 42 H 1.07999 * 119.99770 * 180.25493 * 23 22 21 43 43 H 1.08001 * 119.99947 * 179.79285 * 24 23 22 44 44 H 1.08003 * 119.99870 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.00122 * 179.97438 * 26 25 24 46 46 H 1.09004 * 109.47265 * 111.39173 * 28 27 17 47 47 H 1.08998 * 109.47040 * 351.39322 * 28 27 17 48 48 H 1.08998 * 109.47382 * 231.39084 * 28 27 17 49 49 H 1.08995 * 109.47053 * 248.74788 * 29 27 17 50 50 H 1.09003 * 109.46886 * 8.74685 * 29 27 17 51 51 H 1.09007 * 109.47310 * 128.74520 * 29 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6926 -1.5595 -1.1320 6 6 1.6492 -0.2765 -2.4818 7 7 0.9352 0.8208 -2.6071 8 14 2.1443 -1.2471 -3.9991 9 1 1.1620 -2.3362 -4.2323 10 1 2.1709 -0.3439 -5.1775 11 1 3.4933 -1.8328 -3.7937 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8767 -0.4914 3.6695 15 8 2.5757 -1.4799 3.7811 16 7 1.4278 0.1443 4.7700 17 6 1.7808 -0.3569 6.1005 18 1 2.2721 -1.3297 6.1215 19 6 2.2017 0.6703 7.1535 20 1 2.2155 1.7189 6.8564 21 6 3.2639 0.2597 8.1405 22 6 3.6874 -1.0551 8.1932 23 6 4.6649 -1.4307 9.0955 24 6 5.2120 -0.4936 9.9517 25 6 4.7851 0.8202 9.9025 26 6 3.8106 1.1968 8.9973 27 6 0.8382 -0.0164 7.2566 28 6 -0.4011 0.8209 6.9345 29 6 0.6573 -1.0675 8.3535 30 1 -0.3633 0.4169 0.9392 31 1 -0.3633 0.6050 -0.8308 32 1 -0.3633 -1.0219 -0.1087 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.6653 1.1259 -3.4875 37 1 3.1300 -0.7209 1.2495 38 1 1.6766 -1.7489 1.2492 39 1 0.9943 0.7582 2.3564 40 1 0.8711 0.9336 4.6809 41 1 3.2573 -1.7880 7.5266 42 1 4.9988 -2.4571 9.1338 43 1 5.9734 -0.7878 10.6590 44 1 5.2129 1.5525 10.5712 45 1 3.4767 2.2232 8.9591 46 1 -1.2944 0.2069 7.0491 47 1 -0.3383 1.1829 5.9083 48 1 -0.4536 1.6695 7.6165 49 1 -0.3542 -1.4708 8.3069 50 1 1.3768 -1.8731 8.2070 51 1 0.8205 -0.6074 9.3282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229855757.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:40 Heat of formation + Delta-G solvation = 10.909794 kcal Electronic energy + Delta-G solvation = -28147.356301 eV Core-core repulsion = 24433.090708 eV Total energy + Delta-G solvation = -3714.265593 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.57639 -39.33108 -37.92309 -36.31756 -33.47870 -32.95088 -31.50929 -31.09064 -30.72517 -28.44618 -27.69951 -25.72164 -25.59161 -24.88344 -23.59581 -22.58777 -20.99656 -20.41919 -19.25942 -18.78405 -18.12256 -17.08922 -16.14595 -15.81851 -15.42933 -15.06622 -14.89726 -14.75343 -14.45469 -14.19394 -14.15850 -13.55710 -13.44398 -13.26762 -12.96066 -12.86377 -12.75238 -12.63162 -12.53468 -12.28921 -12.16928 -11.65807 -11.46826 -11.24510 -11.18464 -11.02722 -10.98783 -10.82527 -10.68656 -10.37063 -10.24254 -10.21285 -9.81227 -9.61493 -9.31223 -9.07487 -8.85390 -8.78546 -8.59470 -8.38735 -8.15415 -6.01857 -4.10423 1.14501 1.23785 2.92135 3.27280 3.29828 3.36202 3.40242 3.60554 3.96320 4.35286 4.41716 4.48370 4.58140 4.63580 4.78332 4.81089 4.83484 4.96516 4.96886 5.25435 5.29917 5.37546 5.40944 5.43249 5.65171 5.66067 5.70177 5.79089 5.85259 5.87750 5.91511 6.06859 6.22134 6.30353 6.35370 6.37347 6.46759 6.51559 6.63747 6.80674 6.82719 6.82951 6.90710 7.03876 7.08546 7.28940 7.40693 7.56714 7.71320 8.00458 8.12549 8.37965 8.45843 8.88955 9.01603 9.54933 11.00253 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020764 B = 0.002260 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.167243 B =12386.056173 C =12927.330592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.151 3.849 13 N -0.731 5.731 14 C 0.701 3.299 15 O -0.596 6.596 16 N -0.723 5.723 17 C 0.127 3.873 18 H 0.140 0.860 19 C -0.130 4.130 20 H 0.114 0.886 21 C -0.040 4.040 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.128 4.128 25 C -0.120 4.120 26 C -0.115 4.115 27 C -0.125 4.125 28 C -0.116 4.116 29 C -0.114 4.114 30 H 0.006 0.994 31 H 0.081 0.919 32 H 0.029 0.971 33 H 0.026 0.974 34 H 0.085 0.915 35 H 0.004 0.996 36 H 0.260 0.740 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.393 0.607 40 H 0.394 0.606 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.066 0.934 47 H 0.057 0.943 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.057 2.324 24.658 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.200 1.200 12 C 0.028 3.972 13 N -0.385 5.385 14 C 0.401 3.599 15 O -0.475 6.475 16 N -0.378 5.378 17 C 0.019 3.981 18 H 0.158 0.842 19 C -0.150 4.150 20 H 0.132 0.868 21 C -0.040 4.040 22 C -0.134 4.134 23 C -0.134 4.134 24 C -0.146 4.146 25 C -0.138 4.138 26 C -0.133 4.133 27 C -0.126 4.126 28 C -0.173 4.173 29 C -0.171 4.171 30 H 0.025 0.975 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.104 0.896 35 H 0.023 0.977 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.228 0.772 40 H 0.230 0.770 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.085 0.915 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.081 0.919 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.512 1.507 24.503 24.555 hybrid contribution -0.197 0.398 -0.936 1.036 sum 0.315 1.905 23.567 23.646 Atomic orbital electron populations 1.21795 0.97753 1.00147 0.98881 1.18364 0.92762 0.92763 0.90579 1.21842 0.98618 0.98348 0.99917 1.20966 1.29304 1.14319 0.89898 0.92400 1.24872 0.95008 0.94778 0.98799 1.69825 1.37910 1.21419 1.23262 0.86596 0.79056 0.79908 0.82360 1.20629 1.21361 1.19958 1.21592 0.97906 0.95451 0.82286 1.45511 1.55544 1.32967 1.04527 1.16009 0.80356 0.82937 0.80568 1.90875 1.42932 1.27716 1.85969 1.44594 1.56527 1.32876 1.03780 1.21775 1.00241 0.97988 0.78059 0.84237 1.21888 0.94108 0.99129 0.99922 0.86845 1.19022 0.95934 0.93465 0.95577 1.21144 0.97530 0.95921 0.98759 1.21137 0.96744 0.99633 0.95918 1.21125 1.00336 0.93531 0.99594 1.21097 0.97510 0.96263 0.98923 1.20941 0.97233 0.99228 0.95880 1.22180 0.91080 1.00243 0.99136 1.21310 0.95544 0.99235 1.01239 1.21381 1.02038 0.97064 0.96656 0.97521 0.90066 0.95177 0.95448 0.89629 0.97658 0.93035 0.92912 0.92858 0.77192 0.76995 0.85743 0.86063 0.86318 0.86236 0.86226 0.91543 0.92437 0.91939 0.91992 0.91924 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.03 37.16 0.30 -2.57 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.92 8.11 37.16 0.30 -2.62 16 4 C -0.51 -13.29 8.01 -34.44 -0.28 -13.57 16 5 H 0.06 1.54 7.75 -52.49 -0.41 1.13 16 6 C 0.07 1.76 5.13 -17.82 -0.09 1.67 16 7 N -0.89 -23.60 9.45 55.43 0.52 -23.08 16 8 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 12 C 0.15 3.24 4.50 -4.04 -0.02 3.22 16 13 N -0.73 -13.15 4.91 -65.22 -0.32 -13.47 16 14 C 0.70 12.55 8.57 -86.91 -0.74 11.80 16 15 O -0.60 -12.96 15.91 5.29 0.08 -12.87 16 16 N -0.72 -9.63 5.31 -58.68 -0.31 -9.94 16 17 C 0.13 1.54 5.39 -67.93 -0.37 1.17 16 18 H 0.14 1.94 5.35 -51.93 -0.28 1.66 16 19 C -0.13 -1.33 5.69 -91.76 -0.52 -1.85 16 20 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 21 C -0.04 -0.41 5.05 -104.62 -0.53 -0.94 16 22 C -0.12 -1.22 7.77 -39.59 -0.31 -1.53 16 23 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 24 C -0.13 -1.11 10.05 -39.59 -0.40 -1.51 16 25 C -0.12 -1.04 10.05 -39.59 -0.40 -1.44 16 26 C -0.11 -1.08 9.74 -39.58 -0.39 -1.47 16 27 C -0.12 -1.16 2.70 -154.51 -0.42 -1.58 16 28 C -0.12 -0.92 9.79 37.16 0.36 -0.56 16 29 C -0.11 -0.97 8.62 37.16 0.32 -0.65 16 30 H 0.01 0.11 6.71 -51.93 -0.35 -0.23 16 31 H 0.08 2.00 6.25 -51.93 -0.32 1.67 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 2.13 6.10 -51.93 -0.32 1.81 16 35 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 36 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.39 6.30 6.17 -40.82 -0.25 6.05 16 40 H 0.39 4.23 6.73 -40.82 -0.27 3.96 16 41 H 0.12 1.32 5.15 -52.48 -0.27 1.05 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 44 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 45 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 46 H 0.07 0.50 7.92 -51.93 -0.41 0.09 16 47 H 0.06 0.45 5.74 -51.93 -0.30 0.16 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 50 H 0.06 0.55 5.88 -51.93 -0.31 0.24 16 51 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 LS Contribution 396.25 15.07 5.97 5.97 Total: -1.00 -29.68 396.25 -10.76 -40.44 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -8.04 Total: 9.90 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -3.65 Total: -12.71 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.11 Total: -46.49 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.68 -10.76 -40.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229855757.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.348 kcal (2) G-P(sol) polarization free energy of solvation -29.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds