Wall clock time and date at job start Tue Mar 31 2020 16:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47037 * 2 1 4 4 C 1.57069 * 116.37185 * 177.98562 * 3 2 1 5 5 C 1.57189 * 93.72920 * 181.70695 * 4 3 2 6 6 H 1.09001 * 116.80302 * 182.58189 * 5 4 3 7 7 C 1.56100 * 98.96200 * 309.36039 * 5 4 3 8 8 O 1.44109 * 105.40641 * 32.17075 * 7 5 4 9 9 N 1.49797 * 100.91499 * 55.35497 * 5 4 3 10 10 C 1.46902 * 110.99893 * 202.45396 * 9 5 4 11 11 C 1.50697 * 109.47157 * 193.77807 * 10 9 5 12 12 C 1.38282 * 119.92332 * 89.99976 * 11 10 9 13 13 C 1.38108 * 120.07193 * 179.97438 * 12 11 10 14 14 C 1.38906 * 119.92591 * 0.02562 * 13 12 11 15 15 N 1.39678 * 120.07381 * 179.97438 * 14 13 12 16 16 C 1.46497 * 119.99808 * 359.97438 * 15 14 13 17 17 C 1.46501 * 119.99816 * 179.97438 * 15 14 13 18 18 C 1.50696 * 109.47236 * 270.00017 * 17 15 14 19 19 H 1.08002 * 120.00305 * 0.02562 * 18 17 15 20 20 C 1.37877 * 119.99710 * 180.02562 * 18 17 15 21 21 N 1.31511 * 120.00148 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99880 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47178 * 90.00035 * 22 20 18 24 24 H 1.48499 * 109.46865 * 209.99987 * 22 20 18 25 25 H 1.48503 * 109.46922 * 329.99753 * 22 20 18 26 26 C 1.38911 * 119.85030 * 0.24426 * 14 13 12 27 27 C 1.38098 * 119.92498 * 359.49531 * 26 14 13 28 28 C 1.48336 * 105.66326 * 322.87102 * 9 5 4 29 29 H 1.08994 * 109.46840 * 300.00249 * 1 2 3 30 30 H 1.08994 * 109.46679 * 60.00427 * 1 2 3 31 31 H 1.08997 * 109.46815 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47009 * 239.99835 * 2 1 3 33 33 H 1.09001 * 109.47124 * 120.00087 * 2 1 3 34 34 H 1.09000 * 112.44739 * 297.87159 * 4 3 2 35 35 H 1.08997 * 112.44770 * 65.44557 * 4 3 2 36 36 H 1.09003 * 110.25743 * 151.15395 * 7 5 4 37 37 H 1.09004 * 110.26067 * 273.09681 * 7 5 4 38 38 H 1.09004 * 109.47046 * 73.77444 * 10 9 5 39 39 H 1.09002 * 109.47395 * 313.78030 * 10 9 5 40 40 H 1.07998 * 119.96296 * 0.02562 * 12 11 10 41 41 H 1.07995 * 120.03323 * 180.02562 * 13 12 11 42 42 H 1.09002 * 109.47279 * 269.99449 * 16 15 14 43 43 H 1.09006 * 109.47035 * 150.00012 * 16 15 14 44 44 H 1.08996 * 109.47763 * 30.00029 * 16 15 14 45 45 H 1.08995 * 109.47192 * 30.00566 * 17 15 14 46 46 H 1.09003 * 109.46876 * 149.99968 * 17 15 14 47 47 H 0.97003 * 120.00068 * 179.97438 * 21 20 18 48 48 H 1.08006 * 120.03620 * 179.73061 * 26 14 13 49 49 H 1.08004 * 119.96248 * 180.24689 * 27 26 14 50 50 H 1.09008 * 110.33149 * 121.38547 * 28 9 5 51 51 H 1.09002 * 110.33953 * 243.51915 * 28 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5985 1.6315 0.0495 5 6 3.5104 3.2007 0.0749 6 1 4.4541 3.7461 0.0687 7 6 2.5561 3.4104 -1.1425 8 8 1.6907 2.2582 -1.1535 9 7 2.6242 3.4158 1.2633 10 6 1.9638 4.7263 1.1972 11 6 1.3606 5.0531 2.5389 12 6 2.1066 5.7345 3.4831 13 6 1.5566 6.0360 4.7136 14 6 0.2528 5.6537 5.0024 15 7 -0.3063 5.9566 6.2460 16 6 0.4828 6.6778 7.2477 17 6 -1.6817 5.5530 6.5486 18 6 -2.6292 6.6503 6.1375 19 1 -2.2453 7.5575 5.6946 20 6 -3.9862 6.4961 6.3267 21 7 -4.4536 5.3917 6.8664 22 14 -5.1608 7.8561 5.8164 23 1 -5.5842 7.6423 4.4092 24 1 -6.3538 7.8373 6.7005 25 1 -4.4782 9.1697 5.9338 26 6 -0.4918 4.9644 4.0536 27 6 0.0624 4.6708 2.8233 28 6 1.6291 2.3165 1.2251 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.0384 1.2245 0.9599 35 1 4.0920 1.2553 -0.8466 36 1 1.9709 4.3206 -1.0109 37 1 3.1302 3.4619 -2.0677 38 1 1.1780 4.6995 0.4423 39 1 2.6959 5.4893 0.9324 40 1 3.1201 6.0318 3.2578 41 1 2.1396 6.5685 5.4503 42 1 1.0226 5.9629 7.8686 43 1 -0.1818 7.2735 7.8736 44 1 1.1944 7.3337 6.7463 45 1 -1.9217 4.6416 6.0012 46 1 -1.7796 5.3704 7.6188 47 1 -5.4083 5.2834 6.9999 48 1 -1.5044 4.6618 4.2766 49 1 -0.5174 4.1384 2.0837 50 1 1.6775 1.7296 2.1424 51 1 0.6255 2.7186 1.0860 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231820247.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:00 Heat of formation + Delta-G solvation = 21.288614 kcal Electronic energy + Delta-G solvation = -28795.929035 eV Core-core repulsion = 25082.113502 eV Total energy + Delta-G solvation = -3713.815533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.44910 -38.92347 -36.21635 -34.77468 -34.04031 -32.73835 -31.38193 -30.45149 -29.19897 -28.84393 -27.78212 -26.01881 -24.82061 -24.24535 -23.31675 -22.02097 -21.51692 -21.05568 -19.65002 -19.11250 -17.07598 -16.70989 -16.52202 -16.34612 -15.74261 -15.12923 -14.86963 -14.47754 -14.32506 -13.95461 -13.76252 -13.67763 -13.53288 -13.25113 -12.94856 -12.89381 -12.68194 -12.58365 -12.30660 -12.14700 -12.07055 -11.83048 -11.81288 -11.52195 -11.36404 -11.25366 -11.20129 -11.03575 -10.97769 -10.83840 -10.66314 -10.60727 -10.25434 -9.87624 -9.76165 -9.62806 -8.82260 -8.50925 -8.30472 -8.24147 -6.45535 -6.01543 -4.17840 2.13012 2.22995 3.26219 3.32706 3.36265 3.39169 3.84544 4.05654 4.15836 4.17971 4.40431 4.41270 4.56551 4.67416 4.96645 5.05651 5.08330 5.20908 5.21437 5.24427 5.26743 5.34374 5.43746 5.53172 5.55246 5.58281 5.63219 5.65990 5.72581 5.75818 5.78436 5.85567 5.91290 5.96428 6.03703 6.09327 6.15085 6.29046 6.37083 6.44784 6.56052 6.65070 6.67510 6.91787 6.99410 7.07265 7.21765 7.27926 7.37186 7.61649 7.80713 8.15480 8.27558 8.49980 8.91344 9.49029 10.95196 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014493 B = 0.002838 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.533603 B = 9862.551320 C =10729.734616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 C 0.078 3.922 4 C -0.150 4.150 5 C 0.027 3.973 6 H 0.131 0.869 7 C 0.010 3.990 8 O -0.374 6.374 9 N -0.506 5.506 10 C 0.097 3.903 11 C -0.164 4.164 12 C -0.053 4.053 13 C -0.222 4.222 14 C 0.242 3.758 15 N -0.616 5.616 16 C 0.099 3.901 17 C 0.249 3.751 18 C -0.531 4.531 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.187 4.187 27 C -0.065 4.065 28 C 0.022 3.978 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.035 0.965 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.035 0.965 46 H 0.030 0.970 47 H 0.264 0.736 48 H 0.130 0.870 49 H 0.105 0.895 50 H 0.085 0.915 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.418 -7.384 -13.060 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.122 4.122 3 C 0.038 3.962 4 C -0.188 4.188 5 C -0.081 4.081 6 H 0.149 0.851 7 C -0.068 4.068 8 O -0.293 6.293 9 N -0.229 5.229 10 C -0.030 4.030 11 C -0.167 4.167 12 C -0.072 4.072 13 C -0.245 4.245 14 C 0.135 3.865 15 N -0.322 5.322 16 C -0.045 4.045 17 C 0.130 3.870 18 C -0.570 4.570 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.209 4.209 27 C -0.085 4.085 28 C -0.106 4.106 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.054 0.946 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.053 0.947 46 H 0.048 0.952 47 H 0.074 0.926 48 H 0.148 0.852 49 H 0.123 0.877 50 H 0.103 0.897 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.250 -7.446 -12.411 21.761 hybrid contribution -1.149 1.045 -0.807 1.750 sum 15.102 -6.400 -13.219 21.066 Atomic orbital electron populations 1.21731 0.94663 1.01817 1.02809 1.21047 0.97019 0.91207 1.02929 1.24316 0.93345 0.92253 0.86238 1.24276 0.96285 0.95022 1.03192 1.25082 0.97103 0.96759 0.89117 0.85143 1.24258 0.93373 0.89915 0.99286 1.89035 1.58434 1.34614 1.47254 1.65186 1.17649 1.02256 1.37822 1.21093 0.96835 0.90320 0.94739 1.19059 0.94868 1.06634 0.96174 1.20451 0.97787 0.96532 0.92432 1.20552 0.95407 1.09785 0.98791 1.17941 0.91326 0.91334 0.85930 1.47093 1.15010 1.58837 1.11223 1.21467 0.95612 0.95634 0.91837 1.19273 0.75392 0.95792 0.96586 1.21585 0.91282 1.03140 1.41025 0.92274 1.24961 0.98198 0.95875 0.95027 1.69930 1.13982 1.25739 1.43735 0.86527 0.80339 0.82220 0.78560 1.20497 1.21134 1.19893 1.20833 1.01307 1.05058 0.93745 1.20640 0.94194 0.97803 0.95832 1.23882 0.95631 0.93184 0.97908 0.92168 0.92127 0.92446 0.90977 0.89878 0.88819 0.89839 0.90375 0.91225 0.93776 0.90829 0.87446 0.86934 0.94633 0.91490 0.92693 0.94667 0.95223 0.92647 0.85175 0.87658 0.89714 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.71 37.16 0.36 -1.06 16 2 C -0.08 -0.73 6.04 -26.73 -0.16 -0.89 16 3 C 0.08 0.81 1.42 -86.81 -0.12 0.69 16 4 C -0.15 -1.34 6.57 -22.25 -0.15 -1.48 16 5 C 0.03 0.26 5.28 -62.16 -0.33 -0.07 16 6 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 7 C 0.01 0.10 6.80 38.82 0.26 0.36 16 8 O -0.37 -4.57 11.08 -35.23 -0.39 -4.96 16 9 N -0.51 -6.08 5.23 -217.94 -1.14 -7.22 16 10 C 0.10 1.24 3.90 -4.98 -0.02 1.22 16 11 C -0.16 -2.58 5.23 -104.59 -0.55 -3.13 16 12 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 13 C -0.22 -3.92 9.21 -39.38 -0.36 -4.28 16 14 C 0.24 4.95 6.55 -83.79 -0.55 4.40 16 15 N -0.62 -13.31 2.99 -181.00 -0.54 -13.85 16 16 C 0.10 1.75 10.19 59.85 0.61 2.36 16 17 C 0.25 6.29 4.92 -5.20 -0.03 6.26 16 18 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 19 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 22 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 26 C -0.19 -3.83 9.21 -39.38 -0.36 -4.19 16 27 C -0.07 -1.14 9.02 -39.61 -0.36 -1.50 16 28 C 0.02 0.27 4.70 -1.43 -0.01 0.26 16 29 H 0.06 0.60 7.63 -51.93 -0.40 0.21 16 30 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.83 5.51 -51.93 -0.29 0.54 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.04 0.58 5.99 -51.93 -0.31 0.27 16 39 H 0.07 0.84 7.98 -51.93 -0.41 0.43 16 40 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.11 1.79 6.14 -52.49 -0.32 1.47 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 44 H 0.05 0.86 6.20 -51.93 -0.32 0.54 16 45 H 0.04 0.94 6.18 -51.93 -0.32 0.62 16 46 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 47 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.13 2.94 6.14 -52.48 -0.32 2.62 16 49 H 0.11 1.70 7.08 -52.48 -0.37 1.32 16 50 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 51 H 0.07 0.96 6.01 -51.93 -0.31 0.64 16 LS Contribution 393.30 15.07 5.93 5.93 Total: -1.00 -29.81 393.30 -11.40 -41.21 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -8.41 Total: 3.07 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -2.56 Total: -15.56 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: -0.94 Total: -46.04 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.39 Total: -4.96 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.81 -11.40 -41.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231820247.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.499 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds