Wall clock time and date at job start Tue Mar 31 2020 16:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47037 * 2 1 4 4 C 1.57069 * 116.37185 * 177.98562 * 3 2 1 5 5 C 1.57189 * 93.72920 * 181.70695 * 4 3 2 6 6 H 1.09001 * 116.80302 * 182.58189 * 5 4 3 7 7 C 1.56100 * 98.96200 * 309.36039 * 5 4 3 8 8 O 1.44109 * 105.40641 * 32.17075 * 7 5 4 9 9 N 1.49797 * 100.91499 * 55.35497 * 5 4 3 10 10 C 1.46902 * 110.99893 * 202.45396 * 9 5 4 11 11 C 1.50697 * 109.47157 * 193.77807 * 10 9 5 12 12 C 1.38282 * 119.92332 * 89.99976 * 11 10 9 13 13 C 1.38108 * 120.07193 * 179.97438 * 12 11 10 14 14 C 1.38906 * 119.92591 * 0.02562 * 13 12 11 15 15 N 1.39678 * 120.07381 * 179.97438 * 14 13 12 16 16 C 1.46497 * 119.99808 * 359.97438 * 15 14 13 17 17 C 1.46501 * 119.99816 * 179.97438 * 15 14 13 18 18 C 1.50696 * 109.47236 * 270.00017 * 17 15 14 19 19 H 1.08002 * 120.00305 * 0.02562 * 18 17 15 20 20 C 1.37877 * 119.99710 * 180.02562 * 18 17 15 21 21 N 1.31511 * 120.00148 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99880 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47178 * 90.00035 * 22 20 18 24 24 H 1.48499 * 109.46865 * 209.99987 * 22 20 18 25 25 H 1.48503 * 109.46922 * 329.99753 * 22 20 18 26 26 C 1.38911 * 119.85030 * 0.24426 * 14 13 12 27 27 C 1.38098 * 119.92498 * 359.49531 * 26 14 13 28 28 C 1.48336 * 105.66326 * 322.87102 * 9 5 4 29 29 H 1.08994 * 109.46840 * 300.00249 * 1 2 3 30 30 H 1.08994 * 109.46679 * 60.00427 * 1 2 3 31 31 H 1.08997 * 109.46815 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47009 * 239.99835 * 2 1 3 33 33 H 1.09001 * 109.47124 * 120.00087 * 2 1 3 34 34 H 1.09000 * 112.44739 * 297.87159 * 4 3 2 35 35 H 1.08997 * 112.44770 * 65.44557 * 4 3 2 36 36 H 1.09003 * 110.25743 * 151.15395 * 7 5 4 37 37 H 1.09004 * 110.26067 * 273.09681 * 7 5 4 38 38 H 1.09004 * 109.47046 * 73.77444 * 10 9 5 39 39 H 1.09002 * 109.47395 * 313.78030 * 10 9 5 40 40 H 1.07998 * 119.96296 * 0.02562 * 12 11 10 41 41 H 1.07995 * 120.03323 * 180.02562 * 13 12 11 42 42 H 1.09002 * 109.47279 * 269.99449 * 16 15 14 43 43 H 1.09006 * 109.47035 * 150.00012 * 16 15 14 44 44 H 1.08996 * 109.47763 * 30.00029 * 16 15 14 45 45 H 1.08995 * 109.47192 * 30.00566 * 17 15 14 46 46 H 1.09003 * 109.46876 * 149.99968 * 17 15 14 47 47 H 0.97003 * 120.00068 * 179.97438 * 21 20 18 48 48 H 1.08006 * 120.03620 * 179.73061 * 26 14 13 49 49 H 1.08004 * 119.96248 * 180.24689 * 27 26 14 50 50 H 1.09008 * 110.33149 * 121.38547 * 28 9 5 51 51 H 1.09002 * 110.33953 * 243.51915 * 28 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5985 1.6315 0.0495 5 6 3.5104 3.2007 0.0749 6 1 4.4541 3.7461 0.0687 7 6 2.5561 3.4104 -1.1425 8 8 1.6907 2.2582 -1.1535 9 7 2.6242 3.4158 1.2633 10 6 1.9638 4.7263 1.1972 11 6 1.3606 5.0531 2.5389 12 6 2.1066 5.7345 3.4831 13 6 1.5566 6.0360 4.7136 14 6 0.2528 5.6537 5.0024 15 7 -0.3063 5.9566 6.2460 16 6 0.4828 6.6778 7.2477 17 6 -1.6817 5.5530 6.5486 18 6 -2.6292 6.6503 6.1375 19 1 -2.2453 7.5575 5.6946 20 6 -3.9862 6.4961 6.3267 21 7 -4.4536 5.3917 6.8664 22 14 -5.1608 7.8561 5.8164 23 1 -5.5842 7.6423 4.4092 24 1 -6.3538 7.8373 6.7005 25 1 -4.4782 9.1697 5.9338 26 6 -0.4918 4.9644 4.0536 27 6 0.0624 4.6708 2.8233 28 6 1.6291 2.3165 1.2251 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.0384 1.2245 0.9599 35 1 4.0920 1.2553 -0.8466 36 1 1.9709 4.3206 -1.0109 37 1 3.1302 3.4619 -2.0677 38 1 1.1780 4.6995 0.4423 39 1 2.6959 5.4893 0.9324 40 1 3.1201 6.0318 3.2578 41 1 2.1396 6.5685 5.4503 42 1 1.0226 5.9629 7.8686 43 1 -0.1818 7.2735 7.8736 44 1 1.1944 7.3337 6.7463 45 1 -1.9217 4.6416 6.0012 46 1 -1.7796 5.3704 7.6188 47 1 -5.4083 5.2834 6.9999 48 1 -1.5044 4.6618 4.2766 49 1 -0.5174 4.1384 2.0837 50 1 1.6775 1.7296 2.1424 51 1 0.6255 2.7186 1.0860 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231820247.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:59 Heat of formation + Delta-G solvation = 4.239562 kcal Electronic energy + Delta-G solvation = -28796.668337 eV Core-core repulsion = 25082.113502 eV Total energy + Delta-G solvation = -3714.554836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.28878 -40.36592 -37.62569 -35.92632 -34.80720 -34.73776 -32.47812 -31.91905 -30.24640 -29.87548 -29.53245 -27.29393 -26.05917 -25.46421 -24.45893 -23.34098 -22.99177 -21.85105 -21.08466 -19.97899 -18.65137 -18.12568 -17.88796 -17.32026 -16.86341 -16.75992 -16.07357 -15.86229 -15.56057 -15.35096 -14.92172 -14.80994 -14.68678 -14.37052 -14.24992 -14.08175 -13.83490 -13.78648 -13.57805 -13.30391 -13.18032 -13.06039 -12.91796 -12.80390 -12.75636 -12.62123 -12.55458 -12.34273 -12.23203 -11.99577 -11.96021 -11.75613 -11.69484 -11.61235 -11.37904 -10.66213 -10.53317 -10.35406 -9.67662 -9.23008 -8.37574 -7.80857 -6.39215 0.69333 0.82859 1.35297 1.36319 1.47037 2.32714 2.61030 2.62851 2.87103 3.04513 3.25462 3.34480 3.39282 3.63282 3.87356 3.98588 4.06729 4.21261 4.24420 4.32457 4.33946 4.37338 4.45700 4.49215 4.53399 4.60402 4.64242 4.71513 4.74093 4.80072 4.85400 4.87886 4.91072 4.94871 4.98080 5.01096 5.03090 5.11004 5.11934 5.16713 5.18510 5.31299 5.37744 5.56081 5.63368 5.67133 5.70021 5.83480 5.95749 6.04610 6.05747 6.20285 6.48872 6.81406 6.93032 7.32717 8.81729 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014493 B = 0.002838 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.533603 B = 9862.551320 C =10729.734616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.084 4.084 3 C 0.076 3.924 4 C -0.141 4.141 5 C 0.033 3.967 6 H 0.158 0.842 7 C 0.005 3.995 8 O -0.398 6.398 9 N -0.514 5.514 10 C 0.103 3.897 11 C -0.152 4.152 12 C -0.047 4.047 13 C -0.216 4.216 14 C 0.214 3.786 15 N -0.632 5.632 16 C 0.098 3.902 17 C 0.267 3.733 18 C -0.542 4.542 19 H 0.049 0.951 20 C 0.012 3.988 21 N -0.926 5.926 22 Si 0.961 3.039 23 H -0.276 1.276 24 H -0.276 1.276 25 H -0.268 1.268 26 C -0.215 4.215 27 C -0.068 4.068 28 C 0.021 3.979 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.038 0.962 39 H 0.098 0.902 40 H 0.145 0.855 41 H 0.135 0.865 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.079 0.921 45 H 0.008 0.992 46 H 0.009 0.991 47 H 0.267 0.733 48 H 0.092 0.908 49 H 0.108 0.892 50 H 0.075 0.925 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.448 -6.681 -14.745 25.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.121 4.121 3 C 0.037 3.963 4 C -0.179 4.179 5 C -0.074 4.074 6 H 0.175 0.825 7 C -0.073 4.073 8 O -0.318 6.318 9 N -0.237 5.237 10 C -0.024 4.024 11 C -0.155 4.155 12 C -0.066 4.066 13 C -0.238 4.238 14 C 0.109 3.891 15 N -0.340 5.340 16 C -0.045 4.045 17 C 0.146 3.854 18 C -0.581 4.581 19 H 0.068 0.932 20 C -0.187 4.187 21 N -0.566 5.566 22 Si 0.786 3.214 23 H -0.202 1.202 24 H -0.202 1.202 25 H -0.192 1.192 26 C -0.238 4.238 27 C -0.088 4.088 28 C -0.108 4.108 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.056 0.944 39 H 0.117 0.883 40 H 0.163 0.837 41 H 0.153 0.847 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.026 0.974 46 H 0.027 0.973 47 H 0.076 0.924 48 H 0.110 0.890 49 H 0.127 0.873 50 H 0.093 0.907 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 19.319 -6.742 -14.114 24.857 hybrid contribution -2.020 0.758 -0.381 2.191 sum 17.300 -5.983 -14.495 23.349 Atomic orbital electron populations 1.21708 0.95596 1.02295 1.01306 1.21113 0.96197 0.90615 1.04194 1.24457 0.94775 0.92363 0.84741 1.24272 0.94760 0.94593 1.04238 1.25300 0.97219 0.97538 0.87325 0.82458 1.24372 0.93316 0.88995 1.00587 1.89019 1.59521 1.35509 1.47756 1.65117 1.17531 1.01487 1.39554 1.21045 0.97323 0.91615 0.92461 1.19429 0.93761 1.04692 0.97582 1.20867 0.99199 0.95202 0.91331 1.20824 0.94001 1.09010 1.00003 1.18195 0.92755 0.92647 0.85521 1.46961 1.13975 1.60362 1.12706 1.21605 0.95451 0.96028 0.91388 1.18750 0.77781 0.94342 0.94555 1.21784 0.92178 1.03185 1.40944 0.93248 1.25791 0.99843 0.98158 0.94919 1.70037 1.14481 1.27480 1.44624 0.85503 0.78250 0.79386 0.78239 1.20163 1.20153 1.19237 1.20701 1.00214 1.07248 0.95661 1.20727 0.95420 0.97841 0.94774 1.23814 0.94698 0.93704 0.98537 0.93711 0.93551 0.90981 0.89708 0.88482 0.88326 0.88126 0.91228 0.89344 0.94416 0.88335 0.83714 0.84732 0.92950 0.92528 0.90207 0.97361 0.97268 0.92375 0.88972 0.87348 0.90698 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.71 71.98 0.70 -2.13 16 2 C -0.08 -1.35 6.04 30.59 0.18 -1.16 16 3 C 0.08 1.47 1.42 -8.33 -0.01 1.46 16 4 C -0.14 -2.06 6.57 33.50 0.22 -1.84 16 5 C 0.03 0.52 5.28 46.90 0.25 0.77 16 6 H 0.16 1.63 8.14 -2.39 -0.02 1.61 16 7 C 0.00 0.09 6.80 73.06 0.50 0.58 16 8 O -0.40 -9.23 11.08 -148.98 -1.65 -10.88 16 9 N -0.51 -11.15 5.23 -843.43 -4.41 -15.56 16 10 C 0.10 2.39 3.90 85.56 0.33 2.73 16 11 C -0.15 -4.56 5.23 -19.84 -0.10 -4.66 16 12 C -0.05 -1.35 9.69 22.25 0.22 -1.14 16 13 C -0.22 -7.22 9.21 22.40 0.21 -7.02 16 14 C 0.21 8.93 6.55 38.21 0.25 9.18 16 15 N -0.63 -28.27 2.99 -726.57 -2.17 -30.44 16 16 C 0.10 3.46 10.19 127.77 1.30 4.76 16 17 C 0.27 14.36 4.92 85.63 0.42 14.78 16 18 C -0.54 -31.02 9.39 25.60 0.24 -30.78 16 19 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 20 C 0.01 0.69 5.46 84.66 0.46 1.15 16 21 N -0.93 -55.16 13.29 21.45 0.28 -54.88 16 22 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 C -0.22 -9.38 9.21 22.40 0.21 -9.17 16 27 C -0.07 -2.47 9.02 22.25 0.20 -2.27 16 28 C 0.02 0.50 4.70 87.06 0.41 0.90 16 29 H 0.04 0.95 7.63 -2.39 -0.02 0.93 16 30 H 0.05 0.98 8.11 -2.39 -0.02 0.96 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.35 5.51 -2.39 -0.01 1.34 16 37 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.04 0.95 5.99 -2.38 -0.01 0.93 16 39 H 0.10 1.84 7.98 -2.39 -0.02 1.82 16 40 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 41 H 0.13 3.86 6.14 -2.91 -0.02 3.84 16 42 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 2.07 8.07 -2.38 -0.02 2.05 16 44 H 0.08 2.37 6.20 -2.39 -0.01 2.35 16 45 H 0.01 0.49 6.18 -2.39 -0.01 0.48 16 46 H 0.01 0.52 8.07 -2.39 -0.02 0.51 16 47 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 48 H 0.09 4.63 6.14 -2.91 -0.02 4.62 16 49 H 0.11 3.73 7.08 -2.91 -0.02 3.71 16 50 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 51 H 0.05 1.32 6.01 -2.39 -0.01 1.31 16 Total: -1.00 -67.48 393.30 0.96 -66.51 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.91 Total: 22.37 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: 5.98 Total: -23.86 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -6.30 Total: -100.88 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -1.65 Total: -10.88 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -67.48 0.96 -66.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231820247.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.752 kcal (2) G-P(sol) polarization free energy of solvation -67.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds