Wall clock time and date at job start Tue Mar 31 2020 16:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 120.00247 * 2 1 4 4 C 1.50703 * 109.46594 * 269.99700 * 3 2 1 5 5 H 1.08004 * 120.00225 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99938 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00105 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99995 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47359 * 89.99735 * 8 6 4 10 10 H 1.48504 * 109.47034 * 209.99658 * 8 6 4 11 11 H 1.48502 * 109.47315 * 329.99017 * 8 6 4 12 12 C 1.39676 * 119.99742 * 179.97438 * 2 1 3 13 13 C 1.38907 * 120.07502 * 0.02562 * 12 2 1 14 14 C 1.38112 * 119.92685 * 179.97438 * 13 12 2 15 15 C 1.38285 * 120.07010 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.92277 * 179.97438 * 15 14 13 17 17 N 1.46902 * 109.46762 * 89.99514 * 16 15 14 18 18 C 1.46827 * 111.00092 * 65.31873 * 17 16 15 19 19 C 1.52877 * 109.48302 * 189.61404 * 18 17 16 20 20 C 1.51435 * 108.46640 * 306.45107 * 19 18 17 21 21 O 1.20763 * 121.11363 * 228.98946 * 20 19 18 22 22 C 1.51429 * 117.77578 * 48.70796 * 20 19 18 23 23 C 1.53003 * 109.70864 * 70.91383 * 22 20 19 24 24 C 1.53003 * 109.71240 * 191.50024 * 22 20 19 25 25 C 1.46833 * 110.99730 * 189.99637 * 17 16 15 26 26 C 1.38286 * 120.15244 * 0.26204 * 15 14 13 27 27 C 1.38108 * 120.07443 * 359.45902 * 26 15 14 28 28 H 1.09002 * 109.47106 * 270.01107 * 1 2 3 29 29 H 1.09004 * 109.46651 * 30.00619 * 1 2 3 30 30 H 1.09003 * 109.47139 * 150.00379 * 1 2 3 31 31 H 1.09000 * 109.47546 * 29.99260 * 3 2 1 32 32 H 1.09003 * 109.47558 * 150.00006 * 3 2 1 33 33 H 0.97001 * 120.00317 * 179.97438 * 7 6 4 34 34 H 1.08001 * 120.03804 * 359.95587 * 13 12 2 35 35 H 1.07996 * 119.96438 * 180.02562 * 14 13 12 36 36 H 1.08999 * 109.47030 * 329.99870 * 16 15 14 37 37 H 1.08994 * 109.46949 * 209.99031 * 16 15 14 38 38 H 1.09000 * 109.48240 * 309.72571 * 18 17 16 39 39 H 1.08994 * 109.48791 * 69.75400 * 18 17 16 40 40 H 1.09005 * 109.65456 * 186.66137 * 19 18 17 41 41 H 1.09003 * 109.54776 * 66.17465 * 19 18 17 42 42 H 1.08998 * 109.47208 * 60.00204 * 23 22 20 43 43 H 1.09001 * 109.46802 * 180.02562 * 23 22 20 44 44 H 1.08997 * 109.47215 * 299.99975 * 23 22 20 45 45 H 1.08996 * 109.47473 * 59.99487 * 24 22 20 46 46 H 1.08999 * 109.47404 * 180.02562 * 24 22 20 47 47 H 1.09006 * 109.46653 * 299.99925 * 24 22 20 48 48 H 1.09006 * 109.48014 * 50.27325 * 25 17 16 49 49 H 1.08996 * 109.48464 * 290.23060 * 25 17 16 50 50 H 1.07999 * 119.96019 * 179.70934 * 26 15 14 51 51 H 1.07995 * 120.03885 * 180.27155 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0982 1.0955 -2.2418 6 6 3.1271 2.8772 -1.6729 7 7 3.5544 3.6174 -0.6734 8 14 3.4378 3.4166 -3.4342 9 1 2.3080 4.2602 -3.9002 10 1 4.6985 4.1989 -3.4971 11 1 3.5541 2.2196 -4.3053 12 6 2.1634 -1.2097 0.0005 13 6 1.4703 -2.4135 0.0005 14 6 2.1639 -3.6078 0.0005 15 6 3.5468 -3.6060 0.0011 16 6 4.3003 -4.9111 0.0017 17 7 4.5455 -5.3355 -1.3832 18 6 5.4422 -4.3975 -2.0700 19 6 5.4844 -4.7316 -3.5612 20 6 5.8422 -6.1951 -3.7150 21 8 6.7129 -6.5483 -4.4735 22 6 5.0760 -7.2002 -2.8808 23 6 3.6410 -7.3141 -3.3994 24 6 5.7625 -8.5654 -2.9584 25 6 5.0635 -6.7087 -1.4288 26 6 4.2398 -2.4094 0.0071 27 6 3.5525 -1.2115 0.0013 28 1 -0.3633 0.0002 1.0277 29 1 -0.3633 0.8900 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0284 0.5137 32 1 3.1500 1.1384 0.5138 33 1 4.0319 4.4429 -0.8507 34 1 0.3903 -2.4156 0.0008 35 1 1.6258 -4.5441 0.0001 36 1 3.7110 -5.6706 0.5154 37 1 5.2525 -4.7807 0.5157 38 1 5.0765 -3.3796 -1.9345 39 1 6.4455 -4.4819 -1.6526 40 1 6.2368 -4.1156 -4.0539 41 1 4.5067 -4.5437 -4.0049 42 1 3.6552 -7.6431 -4.4385 43 1 3.0931 -8.0380 -2.7962 44 1 3.1523 -6.3421 -3.3327 45 1 6.7807 -8.4822 -2.5785 46 1 5.2077 -9.2857 -2.3572 47 1 5.7878 -8.9009 -3.9952 48 1 4.4244 -7.3583 -0.8306 49 1 6.0775 -6.7282 -1.0296 50 1 5.3198 -2.4116 0.0122 51 1 4.0943 -0.2773 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231820520.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:52 Heat of formation + Delta-G solvation = -6.160917 kcal Electronic energy + Delta-G solvation = -28662.027143 eV Core-core repulsion = 24947.021308 eV Total energy + Delta-G solvation = -3715.005834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.62351 -39.12738 -37.67306 -35.84907 -34.48069 -32.76019 -31.91968 -30.48695 -29.76549 -27.84931 -27.48363 -26.64890 -25.69779 -24.30265 -22.80819 -22.67155 -21.52186 -21.28891 -19.58650 -18.30817 -16.70156 -16.49534 -16.35826 -16.03841 -15.46418 -15.26132 -14.92400 -14.87062 -14.44393 -14.36885 -14.18690 -13.71084 -13.49047 -13.43020 -13.08181 -12.91555 -12.62718 -12.54127 -12.38247 -12.20192 -12.09071 -11.88419 -11.80669 -11.66766 -11.48001 -11.38889 -11.27658 -11.23161 -11.08605 -10.93929 -10.71708 -10.58984 -10.29273 -9.92111 -9.78357 -9.43903 -8.87999 -8.53710 -8.41159 -8.27913 -6.49997 -6.04881 -4.20577 1.80814 2.06254 2.16992 3.24081 3.31346 3.35500 3.70458 3.87791 4.12159 4.38527 4.49608 4.50368 4.57378 4.70385 4.92116 5.06054 5.14539 5.15593 5.18691 5.22840 5.37375 5.41355 5.42785 5.51648 5.55925 5.58916 5.60973 5.68034 5.68780 5.77241 5.79602 5.87992 5.91383 5.93603 5.97912 6.04935 6.13724 6.25168 6.34871 6.39390 6.60604 6.86357 6.88952 6.95296 7.05510 7.16615 7.23047 7.32444 7.36573 7.56128 7.78007 8.12238 8.23170 8.45352 8.88577 9.46512 10.92599 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.003014 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.140935 B = 9289.035183 C =10569.001640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.615 5.615 3 C 0.249 3.751 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.243 3.757 13 C -0.223 4.223 14 C -0.050 4.050 15 C -0.170 4.170 16 C 0.114 3.886 17 N -0.533 5.533 18 C 0.057 3.943 19 C -0.165 4.165 20 C 0.370 3.630 21 O -0.459 6.459 22 C -0.107 4.107 23 C -0.127 4.127 24 C -0.135 4.135 25 C 0.069 3.931 26 C -0.069 4.069 27 C -0.187 4.187 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.030 0.970 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.102 0.898 39 H 0.034 0.966 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.085 0.915 49 H 0.035 0.965 50 H 0.107 0.893 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.054 -20.510 0.638 20.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.321 5.321 3 C 0.129 3.871 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.135 3.865 13 C -0.246 4.246 14 C -0.069 4.069 15 C -0.173 4.173 16 C -0.013 4.013 17 N -0.258 5.258 18 C -0.071 4.071 19 C -0.203 4.203 20 C 0.245 3.755 21 O -0.332 6.332 22 C -0.109 4.109 23 C -0.185 4.185 24 C -0.192 4.192 25 C -0.059 4.059 26 C -0.088 4.088 27 C -0.210 4.210 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.120 0.880 39 H 0.052 0.948 40 H 0.110 0.890 41 H 0.126 0.874 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.104 0.896 49 H 0.054 0.946 50 H 0.125 0.875 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.058 -20.286 0.046 20.286 hybrid contribution 0.881 0.598 -0.587 1.216 sum 0.938 -19.688 -0.541 19.718 Atomic orbital electron populations 1.21479 0.81478 1.01956 0.99696 1.47116 1.04410 1.04653 1.75877 1.19286 0.92058 0.78762 0.96990 1.21575 1.36391 1.06425 0.92633 0.92238 1.24960 0.95403 0.96292 0.97386 1.69928 1.38325 1.14371 1.30779 0.86534 0.77725 0.78743 0.84710 1.20614 1.21082 1.19754 1.17960 0.91478 0.86004 0.91014 1.20573 0.99037 0.91419 1.13555 1.20462 0.93120 0.96484 0.96852 1.19084 0.93580 0.93105 1.11518 1.20793 0.98009 0.95131 0.87328 1.61804 1.46478 1.00911 1.16569 1.22075 0.94562 0.98845 0.91634 1.22320 1.04919 0.94561 0.98545 1.24986 0.79784 0.92343 0.78365 1.90371 1.27315 1.83371 1.32105 1.21390 0.97938 0.95474 0.96069 1.21672 0.92788 1.03781 1.00224 1.21699 1.00130 0.94680 1.02715 1.22154 0.98749 0.90656 0.94338 1.20662 0.98388 0.91746 0.98020 1.20850 0.92720 0.98663 1.08745 0.94606 0.91464 0.92634 0.95228 0.94642 0.92627 0.86929 0.87301 0.90524 0.94654 0.87996 0.94773 0.89015 0.87382 0.92994 0.91657 0.90312 0.92529 0.91838 0.91777 0.89635 0.94635 0.87466 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.67 10.19 59.85 0.61 2.28 16 2 N -0.62 -12.76 2.99 -180.99 -0.54 -13.30 16 3 C 0.25 6.09 4.91 -5.19 -0.03 6.07 16 4 C -0.53 -14.20 9.39 -34.44 -0.32 -14.53 16 5 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 6 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 7 N -0.90 -25.30 13.29 55.43 0.74 -24.56 16 8 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.24 4.68 6.55 -83.79 -0.55 4.13 16 13 C -0.22 -3.65 9.21 -39.38 -0.36 -4.01 16 14 C -0.05 -0.71 9.69 -39.61 -0.38 -1.10 16 15 C -0.17 -2.36 4.88 -104.59 -0.51 -2.87 16 16 C 0.11 1.24 5.12 -4.97 -0.03 1.22 16 17 N -0.53 -5.61 4.06 -236.08 -0.96 -6.57 16 18 C 0.06 0.64 5.26 -3.93 -0.02 0.62 16 19 C -0.17 -1.83 6.10 -27.58 -0.17 -2.00 16 20 C 0.37 4.32 5.98 -28.32 -0.17 4.15 16 21 O -0.46 -6.66 16.91 6.00 0.10 -6.56 16 22 C -0.11 -1.00 0.79 -155.14 -0.12 -1.12 16 23 C -0.13 -1.08 8.35 37.16 0.31 -0.77 16 24 C -0.13 -1.14 7.94 37.16 0.30 -0.85 16 25 C 0.07 0.62 4.20 -3.70 -0.02 0.60 16 26 C -0.07 -1.08 7.83 -39.61 -0.31 -1.39 16 27 C -0.19 -3.58 9.21 -39.38 -0.36 -3.94 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 30 H 0.06 0.83 6.20 -51.93 -0.32 0.51 16 31 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.04 0.92 6.20 -51.93 -0.32 0.60 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.11 1.68 6.14 -52.49 -0.32 1.36 16 35 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.08 0.74 7.88 -51.93 -0.41 0.33 16 37 H 0.04 0.38 8.07 -51.93 -0.42 -0.04 16 38 H 0.10 1.32 5.50 -51.93 -0.29 1.03 16 39 H 0.03 0.38 8.10 -51.93 -0.42 -0.04 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.11 1.16 7.96 -51.93 -0.41 0.75 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.75 7.44 -51.93 -0.39 0.36 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.59 8.03 -51.93 -0.42 0.17 16 48 H 0.09 0.65 7.94 -51.93 -0.41 0.24 16 49 H 0.04 0.32 8.10 -51.93 -0.42 -0.10 16 50 H 0.11 1.50 7.91 -52.49 -0.42 1.09 16 51 H 0.13 2.79 6.14 -52.49 -0.32 2.47 16 LS Contribution 399.94 15.07 6.03 6.03 Total: -1.00 -29.19 399.94 -10.52 -39.70 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.63 Total: 1.20 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -2.23 Total: -11.93 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.76 Total: -44.43 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: 0.10 Total: -6.56 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.19 -10.52 -39.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231820520.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.543 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds