Wall clock time and date at job start Tue Mar 31 2020 16:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 120.00247 * 2 1 4 4 C 1.50703 * 109.46594 * 269.99700 * 3 2 1 5 5 H 1.08004 * 120.00225 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99938 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00105 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99995 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47359 * 89.99735 * 8 6 4 10 10 H 1.48504 * 109.47034 * 209.99658 * 8 6 4 11 11 H 1.48502 * 109.47315 * 329.99017 * 8 6 4 12 12 C 1.39676 * 119.99742 * 179.97438 * 2 1 3 13 13 C 1.38907 * 120.07502 * 0.02562 * 12 2 1 14 14 C 1.38112 * 119.92685 * 179.97438 * 13 12 2 15 15 C 1.38285 * 120.07010 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.92277 * 179.97438 * 15 14 13 17 17 N 1.46902 * 109.46762 * 89.99514 * 16 15 14 18 18 C 1.46827 * 111.00092 * 65.31873 * 17 16 15 19 19 C 1.52877 * 109.48302 * 189.61404 * 18 17 16 20 20 C 1.51435 * 108.46640 * 306.45107 * 19 18 17 21 21 O 1.20763 * 121.11363 * 228.98946 * 20 19 18 22 22 C 1.51429 * 117.77578 * 48.70796 * 20 19 18 23 23 C 1.53003 * 109.70864 * 70.91383 * 22 20 19 24 24 C 1.53003 * 109.71240 * 191.50024 * 22 20 19 25 25 C 1.46833 * 110.99730 * 189.99637 * 17 16 15 26 26 C 1.38286 * 120.15244 * 0.26204 * 15 14 13 27 27 C 1.38108 * 120.07443 * 359.45902 * 26 15 14 28 28 H 1.09002 * 109.47106 * 270.01107 * 1 2 3 29 29 H 1.09004 * 109.46651 * 30.00619 * 1 2 3 30 30 H 1.09003 * 109.47139 * 150.00379 * 1 2 3 31 31 H 1.09000 * 109.47546 * 29.99260 * 3 2 1 32 32 H 1.09003 * 109.47558 * 150.00006 * 3 2 1 33 33 H 0.97001 * 120.00317 * 179.97438 * 7 6 4 34 34 H 1.08001 * 120.03804 * 359.95587 * 13 12 2 35 35 H 1.07996 * 119.96438 * 180.02562 * 14 13 12 36 36 H 1.08999 * 109.47030 * 329.99870 * 16 15 14 37 37 H 1.08994 * 109.46949 * 209.99031 * 16 15 14 38 38 H 1.09000 * 109.48240 * 309.72571 * 18 17 16 39 39 H 1.08994 * 109.48791 * 69.75400 * 18 17 16 40 40 H 1.09005 * 109.65456 * 186.66137 * 19 18 17 41 41 H 1.09003 * 109.54776 * 66.17465 * 19 18 17 42 42 H 1.08998 * 109.47208 * 60.00204 * 23 22 20 43 43 H 1.09001 * 109.46802 * 180.02562 * 23 22 20 44 44 H 1.08997 * 109.47215 * 299.99975 * 23 22 20 45 45 H 1.08996 * 109.47473 * 59.99487 * 24 22 20 46 46 H 1.08999 * 109.47404 * 180.02562 * 24 22 20 47 47 H 1.09006 * 109.46653 * 299.99925 * 24 22 20 48 48 H 1.09006 * 109.48014 * 50.27325 * 25 17 16 49 49 H 1.08996 * 109.48464 * 290.23060 * 25 17 16 50 50 H 1.07999 * 119.96019 * 179.70934 * 26 15 14 51 51 H 1.07995 * 120.03885 * 180.27155 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0982 1.0955 -2.2418 6 6 3.1271 2.8772 -1.6729 7 7 3.5544 3.6174 -0.6734 8 14 3.4378 3.4166 -3.4342 9 1 2.3080 4.2602 -3.9002 10 1 4.6985 4.1989 -3.4971 11 1 3.5541 2.2196 -4.3053 12 6 2.1634 -1.2097 0.0005 13 6 1.4703 -2.4135 0.0005 14 6 2.1639 -3.6078 0.0005 15 6 3.5468 -3.6060 0.0011 16 6 4.3003 -4.9111 0.0017 17 7 4.5455 -5.3355 -1.3832 18 6 5.4422 -4.3975 -2.0700 19 6 5.4844 -4.7316 -3.5612 20 6 5.8422 -6.1951 -3.7150 21 8 6.7129 -6.5483 -4.4735 22 6 5.0760 -7.2002 -2.8808 23 6 3.6410 -7.3141 -3.3994 24 6 5.7625 -8.5654 -2.9584 25 6 5.0635 -6.7087 -1.4288 26 6 4.2398 -2.4094 0.0071 27 6 3.5525 -1.2115 0.0013 28 1 -0.3633 0.0002 1.0277 29 1 -0.3633 0.8900 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0284 0.5137 32 1 3.1500 1.1384 0.5138 33 1 4.0319 4.4429 -0.8507 34 1 0.3903 -2.4156 0.0008 35 1 1.6258 -4.5441 0.0001 36 1 3.7110 -5.6706 0.5154 37 1 5.2525 -4.7807 0.5157 38 1 5.0765 -3.3796 -1.9345 39 1 6.4455 -4.4819 -1.6526 40 1 6.2368 -4.1156 -4.0539 41 1 4.5067 -4.5437 -4.0049 42 1 3.6552 -7.6431 -4.4385 43 1 3.0931 -8.0380 -2.7962 44 1 3.1523 -6.3421 -3.3327 45 1 6.7807 -8.4822 -2.5785 46 1 5.2077 -9.2857 -2.3572 47 1 5.7878 -8.9009 -3.9952 48 1 4.4244 -7.3583 -0.8306 49 1 6.0775 -6.7282 -1.0296 50 1 5.3198 -2.4116 0.0122 51 1 4.0943 -0.2773 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231820520.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:51 Heat of formation + Delta-G solvation = -21.067087 kcal Electronic energy + Delta-G solvation = -28662.673523 eV Core-core repulsion = 24947.021308 eV Total energy + Delta-G solvation = -3715.652214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.51401 -40.40469 -38.71633 -37.17812 -35.43861 -34.68731 -32.92586 -31.83865 -30.94642 -29.60272 -28.13932 -27.65862 -26.80160 -25.80030 -24.19117 -23.51920 -22.90219 -22.32470 -20.90943 -19.16190 -18.62680 -18.05248 -17.21844 -17.02946 -16.81500 -16.34216 -16.22305 -15.81085 -15.69346 -15.48909 -15.38117 -15.10974 -14.66625 -14.52406 -14.27837 -14.17042 -14.02606 -13.45439 -13.39560 -13.19402 -13.14630 -13.02920 -12.98634 -12.84872 -12.73125 -12.61112 -12.52446 -12.50581 -12.35522 -12.14228 -12.01130 -11.93007 -11.74119 -11.50990 -11.34319 -10.64048 -10.40525 -10.29016 -9.58851 -9.23889 -8.35326 -7.76398 -6.37078 0.76159 0.87502 0.91888 1.36388 1.37709 1.48437 2.34260 2.66855 2.80519 3.02387 3.06465 3.34422 3.70966 3.78878 3.91042 4.07521 4.10659 4.19316 4.24309 4.31030 4.35880 4.44900 4.53240 4.60917 4.68581 4.71509 4.75118 4.77833 4.78798 4.82169 4.90052 4.91928 4.92885 4.99428 5.00646 5.04123 5.06528 5.16750 5.18098 5.22734 5.25560 5.38555 5.47153 5.62029 5.72547 5.73696 5.92900 6.08065 6.08314 6.16846 6.28850 6.46800 6.52712 6.84531 6.98348 7.35035 8.83307 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.003014 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.140935 B = 9289.035183 C =10569.001640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.633 5.633 3 C 0.267 3.733 4 C -0.539 4.539 5 H 0.049 0.951 6 C 0.013 3.987 7 N -0.927 5.927 8 Si 0.959 3.041 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.271 1.271 12 C 0.212 3.788 13 C -0.219 4.219 14 C -0.043 4.043 15 C -0.153 4.153 16 C 0.116 3.884 17 N -0.534 5.534 18 C 0.060 3.940 19 C -0.166 4.166 20 C 0.369 3.631 21 O -0.493 6.493 22 C -0.103 4.103 23 C -0.123 4.123 24 C -0.132 4.132 25 C 0.072 3.928 26 C -0.068 4.068 27 C -0.218 4.218 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.007 0.993 32 H 0.010 0.990 33 H 0.267 0.733 34 H 0.131 0.869 35 H 0.146 0.854 36 H 0.105 0.895 37 H 0.041 0.959 38 H 0.083 0.917 39 H 0.036 0.964 40 H 0.085 0.915 41 H 0.111 0.889 42 H 0.048 0.952 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.052 0.948 48 H 0.112 0.888 49 H 0.037 0.963 50 H 0.118 0.882 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.968 -23.925 0.569 23.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.341 5.341 3 C 0.145 3.855 4 C -0.578 4.578 5 H 0.068 0.932 6 C -0.186 4.186 7 N -0.567 5.567 8 Si 0.784 3.216 9 H -0.196 1.196 10 H -0.205 1.205 11 H -0.196 1.196 12 C 0.107 3.893 13 C -0.241 4.241 14 C -0.062 4.062 15 C -0.155 4.155 16 C -0.010 4.010 17 N -0.258 5.258 18 C -0.068 4.068 19 C -0.204 4.204 20 C 0.247 3.753 21 O -0.369 6.369 22 C -0.105 4.105 23 C -0.181 4.181 24 C -0.189 4.189 25 C -0.056 4.056 26 C -0.087 4.087 27 C -0.241 4.241 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.025 0.975 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.149 0.851 35 H 0.164 0.836 36 H 0.123 0.877 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.054 0.946 40 H 0.104 0.896 41 H 0.129 0.871 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.072 0.928 48 H 0.131 0.869 49 H 0.055 0.945 50 H 0.136 0.864 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.981 -23.741 -0.012 23.762 hybrid contribution 1.246 1.531 -0.542 2.047 sum 0.265 -22.211 -0.555 22.219 Atomic orbital electron populations 1.21592 0.79475 1.02485 1.00897 1.46959 1.05592 1.03787 1.77789 1.18747 0.91025 0.80361 0.95331 1.21781 1.36215 1.06413 0.93373 0.93244 1.25761 0.95149 0.96374 1.01331 1.70035 1.39075 1.14823 1.32779 0.85537 0.77891 0.78295 0.79873 1.19626 1.20524 1.19600 1.18238 0.91605 0.86481 0.92926 1.20827 1.00031 0.90796 1.12482 1.20884 0.93299 0.97091 0.94959 1.19442 0.93906 0.93729 1.08470 1.20831 0.98375 0.93996 0.87795 1.61757 1.46379 1.01528 1.16158 1.21965 0.94814 0.98194 0.91801 1.22315 1.04892 0.94615 0.98573 1.25407 0.79102 0.93005 0.77791 1.90363 1.28940 1.83834 1.33761 1.21417 0.98097 0.95071 0.95874 1.21660 0.92036 1.03849 1.00511 1.21690 1.00066 0.94646 1.02547 1.22228 0.99446 0.89749 0.94154 1.20804 0.99034 0.91442 0.97408 1.20730 0.93224 0.98444 1.11652 0.92995 0.92734 0.90229 0.97460 0.97160 0.92430 0.85139 0.83591 0.87672 0.94054 0.89889 0.94614 0.89629 0.87077 0.93324 0.89543 0.91218 0.93262 0.89288 0.92840 0.86945 0.94523 0.86407 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.34 10.19 127.77 1.30 4.64 16 2 N -0.63 -27.19 2.99 -726.54 -2.17 -29.36 16 3 C 0.27 13.93 4.91 85.63 0.42 14.35 16 4 C -0.54 -30.11 9.39 25.60 0.24 -29.87 16 5 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 6 C 0.01 0.73 5.46 84.65 0.46 1.19 16 7 N -0.93 -54.37 13.29 21.45 0.28 -54.09 16 8 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 12 C 0.21 8.30 6.55 38.21 0.25 8.55 16 13 C -0.22 -6.70 9.21 22.40 0.21 -6.49 16 14 C -0.04 -1.08 9.69 22.25 0.22 -0.86 16 15 C -0.15 -3.81 4.88 -19.84 -0.10 -3.90 16 16 C 0.12 2.05 5.12 85.56 0.44 2.49 16 17 N -0.53 -9.38 4.06 -900.81 -3.66 -13.04 16 18 C 0.06 1.28 5.26 86.28 0.45 1.73 16 19 C -0.17 -3.55 6.10 30.04 0.18 -3.37 16 20 C 0.37 8.19 5.98 29.57 0.18 8.37 16 21 O -0.49 -14.21 16.91 -1.46 -0.02 -14.24 16 22 C -0.10 -1.63 0.79 -52.59 -0.04 -1.67 16 23 C -0.12 -1.69 8.35 71.98 0.60 -1.08 16 24 C -0.13 -1.88 7.94 71.98 0.57 -1.30 16 25 C 0.07 0.99 4.20 86.42 0.36 1.35 16 26 C -0.07 -2.11 7.83 22.25 0.17 -1.93 16 27 C -0.22 -8.72 9.21 22.40 0.21 -8.51 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.94 8.07 -2.38 -0.02 1.92 16 30 H 0.08 2.26 6.20 -2.39 -0.01 2.25 16 31 H 0.01 0.41 8.07 -2.39 -0.02 0.39 16 32 H 0.01 0.59 6.20 -2.39 -0.01 0.57 16 33 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 34 H 0.13 3.48 6.14 -2.91 -0.02 3.46 16 35 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.11 1.36 7.88 -2.39 -0.02 1.34 16 37 H 0.04 0.72 8.07 -2.39 -0.02 0.70 16 38 H 0.08 2.09 5.50 -2.39 -0.01 2.08 16 39 H 0.04 0.74 8.10 -2.39 -0.02 0.72 16 40 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.11 2.30 7.96 -2.39 -0.02 2.28 16 42 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 1.10 7.44 -2.39 -0.02 1.08 16 45 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.05 0.88 8.03 -2.38 -0.02 0.86 16 48 H 0.11 1.03 7.94 -2.38 -0.02 1.01 16 49 H 0.04 0.53 8.10 -2.39 -0.02 0.51 16 50 H 0.12 3.30 7.91 -2.91 -0.02 3.28 16 51 H 0.09 4.29 6.14 -2.91 -0.02 4.27 16 Total: -1.00 -66.59 399.94 3.48 -63.11 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.90 Total: 17.90 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 6.13 Total: -16.33 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -5.55 Total: -96.49 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.02 Total: -14.24 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -66.59 3.48 -63.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231820520.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.047 kcal (2) G-P(sol) polarization free energy of solvation -66.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds