Wall clock time and date at job start Tue Mar 31 2020 16:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52990 * 109.50846 * 2 1 4 4 C 1.53099 * 109.50545 * 239.86858 * 2 1 3 5 5 N 1.47009 * 109.25849 * 183.21793 * 4 2 1 6 6 C 1.46900 * 111.00164 * 182.39033 * 5 4 2 7 7 C 1.53511 * 114.17051 * 168.41319 * 6 5 4 8 8 N 1.47481 * 87.93372 * 220.14327 * 7 6 5 9 9 C 1.46896 * 111.00371 * 138.70436 * 8 7 6 10 10 C 1.50700 * 109.47562 * 165.44703 * 9 8 7 11 11 C 1.37640 * 120.12626 * 103.22105 * 10 9 8 12 12 C 1.38616 * 120.24809 * 179.97438 * 11 10 9 13 13 C 1.38659 * 120.49948 * 0.02864 * 12 11 10 14 14 C 1.37599 * 120.24897 * 0.02562 * 13 12 11 15 15 C 1.40696 * 120.12702 * 282.95379 * 10 9 8 16 16 C 1.41396 * 120.24375 * 359.97438 * 15 10 9 17 17 H 1.08000 * 120.00053 * 27.92391 * 16 15 10 18 18 C 1.39945 * 119.99969 * 207.91910 * 16 15 10 19 19 N 1.30829 * 119.99677 * 12.72566 * 18 16 15 20 20 Si 1.86800 * 120.00035 * 192.72684 * 18 16 15 21 21 H 1.48505 * 109.47023 * 90.00112 * 20 18 16 22 22 H 1.48499 * 109.47140 * 210.00147 * 20 18 16 23 23 H 1.48501 * 109.46845 * 329.99906 * 20 18 16 24 24 C 1.47482 * 87.83742 * 27.00940 * 8 7 6 25 25 C 1.47010 * 110.75202 * 58.61794 * 5 4 2 26 26 C 1.53104 * 109.25738 * 301.38188 * 25 5 4 27 27 O 1.43010 * 109.50409 * 120.09011 * 2 1 3 28 28 H 1.08996 * 109.46723 * 299.91471 * 1 2 3 29 29 H 1.08996 * 109.46675 * 59.91128 * 1 2 3 30 30 H 1.08995 * 109.46995 * 179.91092 * 1 2 3 31 31 H 1.08996 * 109.47552 * 180.08573 * 3 2 1 32 32 H 1.09004 * 109.47662 * 300.09021 * 3 2 1 33 33 H 1.09009 * 109.47115 * 60.08431 * 3 2 1 34 34 H 1.08999 * 109.50666 * 63.28387 * 4 2 1 35 35 H 1.09006 * 109.50843 * 303.15333 * 4 2 1 36 36 H 1.09000 * 113.25966 * 301.36910 * 6 5 4 37 37 H 1.08992 * 113.47416 * 105.38022 * 7 6 5 38 38 H 1.08997 * 113.53318 * 334.91442 * 7 6 5 39 39 H 1.09005 * 109.47267 * 285.44841 * 9 8 7 40 40 H 1.09002 * 109.47461 * 45.44679 * 9 8 7 41 41 H 1.07999 * 119.87725 * 0.02562 * 11 10 9 42 42 H 1.08000 * 119.74720 * 180.02562 * 12 11 10 43 43 H 1.07997 * 119.87503 * 179.97438 * 13 12 11 44 44 H 1.07994 * 120.12741 * 179.97438 * 14 13 12 45 45 H 0.96999 * 119.99643 * 179.97438 * 19 18 16 46 46 H 1.09002 * 113.47227 * 87.75713 * 24 8 7 47 47 H 1.09000 * 113.48101 * 218.22316 * 24 8 7 48 48 H 1.09003 * 109.50995 * 61.31769 * 25 5 4 49 49 H 1.09002 * 109.51001 * 181.40694 * 25 5 4 50 50 H 1.09001 * 109.50425 * 176.78332 * 26 25 5 51 51 H 1.08990 * 109.50577 * 296.91627 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 6 2.0413 -0.7244 -1.2481 5 7 3.5093 -0.7890 -1.2042 6 6 4.0446 -1.4279 -2.4138 7 6 5.5641 -1.2858 -2.5797 8 7 5.3326 -1.0669 -4.0197 9 6 6.1972 0.0029 -4.5354 10 6 6.2030 -0.0379 -6.0418 11 6 5.4687 0.8779 -6.7605 12 6 5.4725 0.8430 -8.1462 13 6 6.2138 -0.1128 -8.8240 14 6 6.9544 -1.0390 -8.1261 15 6 6.9634 -1.0088 -6.7191 16 6 7.7264 -1.9508 -5.9913 17 1 7.4182 -2.2442 -4.9987 18 6 8.8810 -2.5031 -6.5574 19 7 9.3946 -1.9775 -7.6398 20 14 9.6888 -3.9907 -5.7674 21 1 9.1124 -5.2317 -6.3444 22 1 11.1505 -3.9565 -6.0273 23 1 9.4458 -3.9664 -4.3027 24 6 3.9985 -0.5452 -3.6689 25 6 3.9639 -1.4885 0.0063 26 6 3.4335 -0.7564 1.2419 27 8 2.0076 -0.6759 1.1664 28 1 -0.3632 0.5125 0.8907 29 1 -0.3632 0.5152 -0.8892 30 1 -0.3633 -1.0276 -0.0016 31 1 3.1309 1.4414 -0.0015 32 1 1.6767 1.9567 -0.8892 33 1 1.6792 1.9557 0.8908 34 1 1.7274 -0.1803 -2.1389 35 1 1.6332 -1.7348 -1.2753 36 1 3.6718 -2.4407 -2.5665 37 1 6.1122 -2.2024 -2.3626 38 1 5.9781 -0.4161 -2.0695 39 1 5.8198 0.9688 -4.1995 40 1 7.2122 -0.1395 -4.1642 41 1 4.8880 1.6271 -6.2428 42 1 4.8937 1.5658 -8.7020 43 1 6.2092 -0.1310 -9.9038 44 1 7.5307 -1.7828 -8.6560 45 1 10.1951 -2.3601 -8.0319 46 1 3.9937 0.5224 -3.4491 47 1 3.2198 -0.8343 -4.3747 48 1 3.5865 -2.5111 -0.0008 49 1 5.0536 -1.5029 0.0309 50 1 3.7201 -1.3035 2.1400 51 1 3.8534 0.2487 1.2776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235529564.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:30 Heat of formation + Delta-G solvation = 18.548823 kcal Electronic energy + Delta-G solvation = -28986.762200 eV Core-core repulsion = 25272.827861 eV Total energy + Delta-G solvation = -3713.934340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.58970 -39.31824 -37.41113 -35.08436 -33.80801 -33.53973 -31.42203 -29.41886 -29.18462 -27.59697 -27.52620 -25.93104 -25.43058 -24.68460 -23.22166 -22.05909 -20.87636 -19.54839 -19.44026 -19.34540 -17.12412 -16.68359 -16.54518 -15.58884 -15.41381 -15.28302 -14.98923 -14.84066 -14.57986 -14.43483 -14.00539 -13.66089 -13.31789 -13.08272 -12.77981 -12.55738 -12.50523 -12.34460 -12.24203 -12.17629 -11.90113 -11.87219 -11.58117 -11.51390 -11.36295 -11.18516 -11.08034 -10.97644 -10.63026 -10.46890 -10.38775 -10.30515 -10.12509 -9.69870 -9.45271 -9.26000 -9.14174 -8.49952 -8.28920 -7.30409 -7.22197 -6.65057 -4.27145 2.83040 3.01856 3.11158 3.14346 3.29606 3.49178 3.66972 3.99503 4.36280 4.57578 4.62118 4.73805 4.75925 4.80562 4.89436 5.03034 5.15881 5.24686 5.34290 5.36788 5.42351 5.45869 5.55069 5.60339 5.66075 5.68195 5.74094 5.78094 5.80262 5.84471 5.95297 5.96658 6.02014 6.11381 6.14450 6.21219 6.30288 6.46818 6.53832 6.80200 6.86205 6.90553 6.97909 7.04524 7.20165 7.33923 7.45016 7.61101 7.72970 7.97327 8.14242 8.20073 8.39057 8.74351 9.01114 9.07957 10.29613 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015117 B = 0.003061 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.741021 B = 9145.920117 C =10585.359988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.114 3.886 3 C -0.168 4.168 4 C 0.032 3.968 5 N -0.522 5.522 6 C 0.043 3.957 7 C 0.010 3.990 8 N -0.448 5.448 9 C 0.094 3.906 10 C -0.185 4.185 11 C -0.088 4.088 12 C -0.242 4.242 13 C -0.109 4.109 14 C -0.160 4.160 15 C 0.129 3.871 16 C -0.448 4.448 17 H 0.086 0.914 18 C 0.072 3.928 19 N -0.803 5.803 20 Si 0.906 3.094 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.263 1.263 24 C 0.017 3.983 25 C 0.018 3.982 26 C 0.063 3.937 27 O -0.379 6.379 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.117 0.883 45 H 0.277 0.723 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.041 0.959 49 H 0.087 0.913 50 H 0.095 0.905 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.264 2.347 14.888 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.074 3.926 3 C -0.225 4.225 4 C -0.096 4.096 5 N -0.247 5.247 6 C -0.065 4.065 7 C -0.120 4.120 8 N -0.170 5.170 9 C -0.033 4.033 10 C -0.187 4.187 11 C -0.107 4.107 12 C -0.262 4.262 13 C -0.128 4.128 14 C -0.179 4.179 15 C 0.126 3.874 16 C -0.478 4.478 17 H 0.104 0.896 18 C -0.145 4.145 19 N -0.430 5.430 20 Si 0.731 3.269 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.188 1.188 24 C -0.113 4.113 25 C -0.110 4.110 26 C -0.014 4.014 27 O -0.299 6.299 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.135 0.865 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.060 0.940 49 H 0.105 0.895 50 H 0.113 0.887 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.875 2.193 14.391 18.171 hybrid contribution 0.409 -0.671 0.379 0.873 sum -10.466 1.522 14.770 18.166 Atomic orbital electron populations 1.21747 0.92348 1.02779 1.02683 1.21556 0.94394 0.91925 0.84686 1.22269 1.02987 0.95294 1.01962 1.22715 0.88131 0.99849 0.98899 1.62454 1.08545 1.51966 1.01781 1.23370 0.96567 0.97025 0.89530 1.23807 0.94399 1.01875 0.91909 1.69101 1.01954 1.34076 1.11831 1.21182 0.97102 0.90623 0.94391 1.19423 1.07093 0.99819 0.92327 1.20348 0.98612 0.97909 0.93824 1.20303 1.08180 1.03815 0.93863 1.20680 0.98183 0.96652 0.97252 1.21364 1.01441 1.00446 0.94681 1.17380 0.88926 0.89541 0.91514 1.19668 1.05888 1.19727 1.02518 0.89598 1.25940 0.97135 0.96952 0.94424 1.69822 1.18474 1.36288 1.18369 0.86350 0.78057 0.81946 0.80525 1.19479 1.20578 1.18751 1.23856 0.95272 0.97906 0.94230 1.22730 1.01392 0.96285 0.90617 1.22654 0.81227 1.00392 0.97166 1.88003 1.21015 1.77887 1.42965 0.91631 0.90894 0.91963 0.90929 0.91683 0.92549 0.89590 0.94076 0.90621 0.90306 0.91149 0.95164 0.90865 0.90022 0.89853 0.89727 0.86531 0.91184 0.91115 0.90502 0.94047 0.89471 0.88690 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.85 37.16 0.33 -0.79 16 2 C 0.11 1.12 1.11 -90.57 -0.10 1.02 16 3 C -0.17 -1.56 8.17 37.15 0.30 -1.26 16 4 C 0.03 0.35 4.29 -3.71 -0.02 0.33 16 5 N -0.52 -6.01 4.06 -226.00 -0.92 -6.93 16 6 C 0.04 0.58 3.44 -67.49 -0.23 0.35 16 7 C 0.01 0.14 6.64 -7.54 -0.05 0.09 16 8 N -0.45 -8.21 5.83 -246.08 -1.43 -9.64 16 9 C 0.09 1.90 4.22 -4.98 -0.02 1.88 16 10 C -0.18 -4.38 5.52 -103.91 -0.57 -4.96 16 11 C -0.09 -1.99 9.65 -39.66 -0.38 -2.38 16 12 C -0.24 -5.55 10.05 -39.29 -0.39 -5.95 16 13 C -0.11 -2.63 10.02 -39.66 -0.40 -3.03 16 14 C -0.16 -4.23 8.66 -38.87 -0.34 -4.56 16 15 C 0.13 3.41 5.55 -106.82 -0.59 2.81 16 16 C -0.45 -11.69 8.18 -37.74 -0.31 -12.00 16 17 H 0.09 2.19 6.78 -52.49 -0.36 1.84 16 18 C 0.07 1.80 5.22 -17.34 -0.09 1.71 16 19 N -0.80 -20.95 10.91 55.55 0.61 -20.34 16 20 Si 0.91 19.00 29.58 -169.99 -5.03 13.98 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 24 C 0.02 0.26 7.05 -7.53 -0.05 0.20 16 25 C 0.02 0.19 5.55 -3.71 -0.02 0.17 16 26 C 0.06 0.59 6.61 37.21 0.25 0.84 16 27 O -0.38 -4.24 10.28 -35.23 -0.36 -4.60 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.75 6.13 -51.93 -0.32 0.43 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.09 0.90 7.79 -51.93 -0.40 0.49 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 39 H 0.03 0.56 7.05 -51.93 -0.37 0.19 16 40 H 0.07 1.55 7.42 -51.93 -0.39 1.17 16 41 H 0.08 1.64 8.01 -52.49 -0.42 1.22 16 42 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.08 1.84 8.06 -52.49 -0.42 1.41 16 44 H 0.12 3.19 6.25 -52.49 -0.33 2.86 16 45 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 46 H 0.07 1.06 7.38 -51.93 -0.38 0.68 16 47 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.09 0.86 7.54 -51.93 -0.39 0.47 16 50 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 51 H 0.06 0.57 6.49 -51.93 -0.34 0.23 16 LS Contribution 393.49 15.07 5.93 5.93 Total: -1.00 -27.93 393.49 -12.63 -40.56 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -8.73 Total: 6.57 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: -2.69 Total: -25.52 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -1.74 Total: -36.92 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.36 Total: -4.60 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -27.93 -12.63 -40.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235529564.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.110 kcal (2) G-P(sol) polarization free energy of solvation -27.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds