Wall clock time and date at job start Tue Mar 31 2020 16:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52990 * 109.50846 * 2 1 4 4 C 1.53099 * 109.50545 * 239.86858 * 2 1 3 5 5 N 1.47009 * 109.25849 * 183.21793 * 4 2 1 6 6 C 1.46900 * 111.00164 * 182.39033 * 5 4 2 7 7 C 1.53511 * 114.17051 * 168.41319 * 6 5 4 8 8 N 1.47481 * 87.93372 * 220.14327 * 7 6 5 9 9 C 1.46896 * 111.00371 * 138.70436 * 8 7 6 10 10 C 1.50700 * 109.47562 * 165.44703 * 9 8 7 11 11 C 1.37640 * 120.12626 * 103.22105 * 10 9 8 12 12 C 1.38616 * 120.24809 * 179.97438 * 11 10 9 13 13 C 1.38659 * 120.49948 * 0.02864 * 12 11 10 14 14 C 1.37599 * 120.24897 * 0.02562 * 13 12 11 15 15 C 1.40696 * 120.12702 * 282.95379 * 10 9 8 16 16 C 1.41396 * 120.24375 * 359.97438 * 15 10 9 17 17 H 1.08000 * 120.00053 * 27.92391 * 16 15 10 18 18 C 1.39945 * 119.99969 * 207.91910 * 16 15 10 19 19 N 1.30829 * 119.99677 * 12.72566 * 18 16 15 20 20 Si 1.86800 * 120.00035 * 192.72684 * 18 16 15 21 21 H 1.48505 * 109.47023 * 90.00112 * 20 18 16 22 22 H 1.48499 * 109.47140 * 210.00147 * 20 18 16 23 23 H 1.48501 * 109.46845 * 329.99906 * 20 18 16 24 24 C 1.47482 * 87.83742 * 27.00940 * 8 7 6 25 25 C 1.47010 * 110.75202 * 58.61794 * 5 4 2 26 26 C 1.53104 * 109.25738 * 301.38188 * 25 5 4 27 27 O 1.43010 * 109.50409 * 120.09011 * 2 1 3 28 28 H 1.08996 * 109.46723 * 299.91471 * 1 2 3 29 29 H 1.08996 * 109.46675 * 59.91128 * 1 2 3 30 30 H 1.08995 * 109.46995 * 179.91092 * 1 2 3 31 31 H 1.08996 * 109.47552 * 180.08573 * 3 2 1 32 32 H 1.09004 * 109.47662 * 300.09021 * 3 2 1 33 33 H 1.09009 * 109.47115 * 60.08431 * 3 2 1 34 34 H 1.08999 * 109.50666 * 63.28387 * 4 2 1 35 35 H 1.09006 * 109.50843 * 303.15333 * 4 2 1 36 36 H 1.09000 * 113.25966 * 301.36910 * 6 5 4 37 37 H 1.08992 * 113.47416 * 105.38022 * 7 6 5 38 38 H 1.08997 * 113.53318 * 334.91442 * 7 6 5 39 39 H 1.09005 * 109.47267 * 285.44841 * 9 8 7 40 40 H 1.09002 * 109.47461 * 45.44679 * 9 8 7 41 41 H 1.07999 * 119.87725 * 0.02562 * 11 10 9 42 42 H 1.08000 * 119.74720 * 180.02562 * 12 11 10 43 43 H 1.07997 * 119.87503 * 179.97438 * 13 12 11 44 44 H 1.07994 * 120.12741 * 179.97438 * 14 13 12 45 45 H 0.96999 * 119.99643 * 179.97438 * 19 18 16 46 46 H 1.09002 * 113.47227 * 87.75713 * 24 8 7 47 47 H 1.09000 * 113.48101 * 218.22316 * 24 8 7 48 48 H 1.09003 * 109.50995 * 61.31769 * 25 5 4 49 49 H 1.09002 * 109.51001 * 181.40694 * 25 5 4 50 50 H 1.09001 * 109.50425 * 176.78332 * 26 25 5 51 51 H 1.08990 * 109.50577 * 296.91627 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 6 2.0413 -0.7244 -1.2481 5 7 3.5093 -0.7890 -1.2042 6 6 4.0446 -1.4279 -2.4138 7 6 5.5641 -1.2858 -2.5797 8 7 5.3326 -1.0669 -4.0197 9 6 6.1972 0.0029 -4.5354 10 6 6.2030 -0.0379 -6.0418 11 6 5.4687 0.8779 -6.7605 12 6 5.4725 0.8430 -8.1462 13 6 6.2138 -0.1128 -8.8240 14 6 6.9544 -1.0390 -8.1261 15 6 6.9634 -1.0088 -6.7191 16 6 7.7264 -1.9508 -5.9913 17 1 7.4182 -2.2442 -4.9987 18 6 8.8810 -2.5031 -6.5574 19 7 9.3946 -1.9775 -7.6398 20 14 9.6888 -3.9907 -5.7674 21 1 9.1124 -5.2317 -6.3444 22 1 11.1505 -3.9565 -6.0273 23 1 9.4458 -3.9664 -4.3027 24 6 3.9985 -0.5452 -3.6689 25 6 3.9639 -1.4885 0.0063 26 6 3.4335 -0.7564 1.2419 27 8 2.0076 -0.6759 1.1664 28 1 -0.3632 0.5125 0.8907 29 1 -0.3632 0.5152 -0.8892 30 1 -0.3633 -1.0276 -0.0016 31 1 3.1309 1.4414 -0.0015 32 1 1.6767 1.9567 -0.8892 33 1 1.6792 1.9557 0.8908 34 1 1.7274 -0.1803 -2.1389 35 1 1.6332 -1.7348 -1.2753 36 1 3.6718 -2.4407 -2.5665 37 1 6.1122 -2.2024 -2.3626 38 1 5.9781 -0.4161 -2.0695 39 1 5.8198 0.9688 -4.1995 40 1 7.2122 -0.1395 -4.1642 41 1 4.8880 1.6271 -6.2428 42 1 4.8937 1.5658 -8.7020 43 1 6.2092 -0.1310 -9.9038 44 1 7.5307 -1.7828 -8.6560 45 1 10.1951 -2.3601 -8.0319 46 1 3.9937 0.5224 -3.4491 47 1 3.2198 -0.8343 -4.3747 48 1 3.5865 -2.5111 -0.0008 49 1 5.0536 -1.5029 0.0309 50 1 3.7201 -1.3035 2.1400 51 1 3.8534 0.2487 1.2776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235529564.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:29 Heat of formation + Delta-G solvation = 2.152247 kcal Electronic energy + Delta-G solvation = -28987.473209 eV Core-core repulsion = 25272.827861 eV Total energy + Delta-G solvation = -3714.645349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.63169 -40.41023 -39.17213 -36.09334 -35.42858 -34.54883 -33.03981 -31.29347 -30.17223 -28.94254 -28.21048 -27.15483 -27.04158 -25.97221 -24.36427 -23.14999 -22.75879 -21.21961 -20.55961 -20.24687 -18.99685 -17.72281 -17.37942 -17.14707 -16.73419 -16.33666 -16.27905 -15.91030 -15.75328 -15.64222 -15.45309 -15.17564 -14.63126 -14.36387 -14.09965 -13.95366 -13.60288 -13.48402 -13.30938 -13.19697 -12.99410 -12.92157 -12.86223 -12.73651 -12.68260 -12.64237 -12.39008 -12.25334 -12.11693 -12.03739 -11.90629 -11.33221 -11.27832 -11.20016 -11.05755 -11.01575 -10.53567 -9.67502 -9.42262 -9.18786 -9.11489 -8.52701 -6.23174 1.02335 1.16003 1.38317 1.50077 1.55084 2.23797 2.61752 2.82657 2.85808 3.29438 3.32924 3.81004 3.85399 3.95583 4.02047 4.07399 4.11087 4.21590 4.23846 4.34902 4.39966 4.42442 4.53575 4.57343 4.61155 4.68387 4.71686 4.74355 4.74578 4.78526 4.80362 4.84573 4.87067 4.94732 5.01175 5.02559 5.07633 5.14993 5.23829 5.28558 5.41353 5.42516 5.50823 5.60997 5.82470 5.93870 5.98229 6.10833 6.17811 6.25967 6.29049 6.31768 6.50276 6.81660 7.08580 7.16418 8.43916 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015117 B = 0.003061 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.741021 B = 9145.920117 C =10585.359988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.111 3.889 3 C -0.163 4.163 4 C 0.033 3.967 5 N -0.521 5.521 6 C 0.064 3.936 7 C 0.015 3.985 8 N -0.478 5.478 9 C 0.105 3.895 10 C -0.189 4.189 11 C -0.094 4.094 12 C -0.241 4.241 13 C -0.118 4.118 14 C -0.191 4.191 15 C 0.097 3.903 16 C -0.472 4.472 17 H 0.083 0.917 18 C 0.030 3.970 19 N -0.837 5.837 20 Si 0.974 3.026 21 H -0.268 1.268 22 H -0.272 1.272 23 H -0.258 1.258 24 C 0.022 3.978 25 C 0.018 3.982 26 C 0.063 3.937 27 O -0.394 6.394 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.282 0.718 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.036 0.964 49 H 0.092 0.908 50 H 0.113 0.887 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.449 3.062 16.496 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.072 3.928 3 C -0.220 4.220 4 C -0.095 4.095 5 N -0.246 5.246 6 C -0.045 4.045 7 C -0.114 4.114 8 N -0.200 5.200 9 C -0.023 4.023 10 C -0.191 4.191 11 C -0.113 4.113 12 C -0.260 4.260 13 C -0.137 4.137 14 C -0.211 4.211 15 C 0.095 3.905 16 C -0.502 4.502 17 H 0.102 0.898 18 C -0.183 4.183 19 N -0.465 5.465 20 Si 0.796 3.204 21 H -0.193 1.193 22 H -0.197 1.197 23 H -0.181 1.181 24 C -0.107 4.107 25 C -0.110 4.110 26 C -0.013 4.013 27 O -0.314 6.314 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.121 0.879 44 H 0.113 0.887 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.090 0.910 48 H 0.054 0.946 49 H 0.111 0.889 50 H 0.131 0.869 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.076 2.918 16.005 20.261 hybrid contribution 0.684 -0.803 -0.134 1.063 sum -11.391 2.115 15.871 19.650 Atomic orbital electron populations 1.21763 0.91104 1.02897 1.03610 1.21678 0.95380 0.91924 0.83822 1.22221 1.02222 0.95012 1.02571 1.22761 0.87393 0.99696 0.99694 1.62445 1.09191 1.51662 1.01351 1.23059 0.95291 0.96366 0.89770 1.23783 0.95645 1.02008 0.89987 1.69000 1.03149 1.33831 1.14053 1.21017 0.96845 0.92158 0.92236 1.19862 1.05856 0.98908 0.94453 1.20721 0.98405 0.98115 0.94032 1.20700 1.07379 1.03511 0.94401 1.20941 0.97890 0.96458 0.98386 1.21347 1.03046 1.01491 0.95225 1.17745 0.90118 0.90797 0.91851 1.19809 1.06747 1.20921 1.02698 0.89847 1.26724 0.97426 0.99308 0.94864 1.69898 1.19141 1.37679 1.19746 0.85320 0.77271 0.78114 0.79699 1.19297 1.19709 1.18124 1.23828 0.93483 0.98564 0.94841 1.22787 1.01747 0.96019 0.90469 1.22748 0.80569 1.00694 0.97326 1.87994 1.21822 1.78134 1.43461 0.91164 0.89528 0.92269 0.91987 0.91044 0.91982 0.89260 0.94776 0.91274 0.90676 0.90311 0.93350 0.92617 0.86949 0.86835 0.87892 0.88659 0.90749 0.90317 0.91031 0.94616 0.88949 0.86922 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.85 71.98 0.64 -1.30 16 2 C 0.11 1.98 1.11 -10.76 -0.01 1.96 16 3 C -0.16 -2.68 8.17 71.98 0.59 -2.09 16 4 C 0.03 0.64 4.29 86.32 0.37 1.01 16 5 N -0.52 -11.11 4.06 -868.92 -3.52 -14.64 16 6 C 0.06 1.62 3.44 45.37 0.16 1.78 16 7 C 0.01 0.43 6.64 83.58 0.55 0.99 16 8 N -0.48 -17.24 5.83 -932.46 -5.44 -22.68 16 9 C 0.11 4.18 4.22 85.56 0.36 4.54 16 10 C -0.19 -8.94 5.52 -19.41 -0.11 -9.04 16 11 C -0.09 -4.10 9.65 22.22 0.21 -3.89 16 12 C -0.24 -10.63 10.05 22.46 0.23 -10.41 16 13 C -0.12 -5.71 10.02 22.22 0.22 -5.49 16 14 C -0.19 -10.44 8.66 22.73 0.20 -10.24 16 15 C 0.10 5.27 5.55 -21.29 -0.12 5.15 16 16 C -0.47 -25.31 8.18 23.46 0.19 -25.12 16 17 H 0.08 4.37 6.78 -2.91 -0.02 4.35 16 18 C 0.03 1.52 5.22 85.26 0.44 1.96 16 19 N -0.84 -45.11 10.91 21.83 0.24 -44.87 16 20 Si 0.97 39.59 29.58 68.60 2.03 41.62 16 21 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 22 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 24 C 0.02 0.64 7.05 83.58 0.59 1.23 16 25 C 0.02 0.34 5.55 86.32 0.48 0.82 16 26 C 0.06 1.08 6.61 72.02 0.48 1.55 16 27 O -0.39 -8.07 10.28 -148.98 -1.53 -9.60 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 1.16 6.13 -2.39 -0.01 1.14 16 32 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.06 0.94 8.14 -2.38 -0.02 0.93 16 34 H 0.09 1.69 7.79 -2.39 -0.02 1.67 16 35 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.08 2.16 7.91 -2.39 -0.02 2.14 16 39 H 0.05 1.71 7.05 -2.38 -0.02 1.69 16 40 H 0.06 2.38 7.42 -2.39 -0.02 2.36 16 41 H 0.11 4.16 8.01 -2.91 -0.02 4.13 16 42 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 43 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 44 H 0.10 5.49 6.25 -2.91 -0.02 5.47 16 45 H 0.28 13.91 8.30 -92.71 -0.77 13.15 16 46 H 0.08 2.17 7.38 -2.39 -0.02 2.16 16 47 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.09 1.66 7.54 -2.39 -0.02 1.64 16 50 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.06 1.06 6.49 -2.39 -0.02 1.05 16 Total: -1.00 -60.78 393.49 -1.86 -62.65 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: 0.89 Total: 34.09 kcal Atomic # 6 Polarization: -52.04 SS G_CDS: 5.47 Total: -46.57 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -8.72 Total: -82.19 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -1.53 Total: -9.60 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -60.78 -1.86 -62.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235529564.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.798 kcal (2) G-P(sol) polarization free energy of solvation -60.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds