Wall clock time and date at job start Tue Mar 31 2020 15:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34451 * 125.45206 * 2 1 4 4 C 1.46715 * 106.38537 * 179.97438 * 3 2 1 5 5 C 1.47185 * 127.01894 * 179.97438 * 4 3 2 6 6 O 1.21656 * 120.00091 * 172.91216 * 5 4 3 7 7 N 1.34777 * 119.99659 * 352.91960 * 5 4 3 8 8 C 1.36968 * 120.00124 * 2.90656 * 7 5 4 9 9 H 1.08000 * 120.00605 * 309.42838 * 8 7 5 10 10 C 1.38977 * 120.00317 * 129.43108 * 8 7 5 11 11 N 1.31411 * 120.00101 * 172.09455 * 10 8 7 12 12 Si 1.86798 * 119.99764 * 352.09324 * 10 8 7 13 13 H 1.48506 * 109.46995 * 84.85868 * 12 10 8 14 14 H 1.48495 * 109.47258 * 204.85715 * 12 10 8 15 15 H 1.48500 * 109.47267 * 324.85991 * 12 10 8 16 16 C 1.46501 * 119.99801 * 182.90468 * 7 5 4 17 17 C 1.54261 * 110.03275 * 61.43276 * 16 7 5 18 18 C 1.54965 * 104.16173 * 217.13758 * 17 16 7 19 19 C 1.54891 * 102.77861 * 37.88780 * 18 17 16 20 20 C 1.53874 * 110.03318 * 304.21291 * 16 7 5 21 21 C 1.37842 * 105.96716 * 359.97438 * 4 3 2 22 22 C 1.50691 * 125.90412 * 180.02562 * 21 4 3 23 23 N 1.34703 * 108.19223 * 0.26062 * 21 4 3 24 24 C 1.46503 * 124.81740 * 179.71608 * 23 21 4 25 25 C 1.52999 * 109.46975 * 89.99968 * 24 23 21 26 26 C 1.52999 * 117.49950 * 243.62037 * 25 24 23 27 27 C 1.53000 * 60.00381 * 252.51400 * 26 25 24 28 28 H 1.08999 * 109.47490 * 89.97992 * 1 2 3 29 29 H 1.09004 * 109.46781 * 209.98059 * 1 2 3 30 30 H 1.09003 * 109.47247 * 329.97629 * 1 2 3 31 31 H 1.07994 * 126.80623 * 359.97438 * 3 2 1 32 32 H 0.97007 * 120.00101 * 180.02562 * 11 10 8 33 33 H 1.08997 * 110.01737 * 182.82089 * 16 7 5 34 34 H 1.09008 * 110.48783 * 335.78518 * 17 16 7 35 35 H 1.08994 * 110.49121 * 98.42602 * 17 16 7 36 36 H 1.09001 * 110.71775 * 279.57577 * 18 17 16 37 37 H 1.09006 * 110.92410 * 156.29516 * 18 17 16 38 38 H 1.08998 * 110.48534 * 203.40693 * 19 18 17 39 39 H 1.08998 * 110.60069 * 80.81668 * 19 18 17 40 40 H 1.09000 * 110.03267 * 238.56878 * 20 16 7 41 41 H 1.09005 * 110.03413 * 359.95629 * 20 16 7 42 42 H 1.09001 * 109.47402 * 90.02127 * 22 21 4 43 43 H 1.09005 * 109.47342 * 330.01805 * 22 21 4 44 44 H 1.09001 * 109.47392 * 210.02254 * 22 21 4 45 45 H 1.09000 * 109.47449 * 210.00459 * 24 23 21 46 46 H 1.09005 * 109.46946 * 330.00074 * 24 23 21 47 47 H 1.08993 * 115.55199 * 29.33410 * 25 24 23 48 48 H 1.09001 * 117.49724 * 0.02562 * 26 25 24 49 49 H 1.09000 * 117.49970 * 145.02411 * 26 25 24 50 50 H 1.08995 * 117.50144 * 252.51220 * 27 26 25 51 51 H 1.08995 * 117.49545 * 107.48802 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2869 1.0952 0.0000 4 6 3.6735 0.6160 0.0006 5 6 4.8950 1.4372 0.0003 6 8 5.9831 0.9090 0.1309 7 7 4.8079 2.7743 -0.1445 8 6 3.5802 3.3752 -0.2316 9 1 2.8462 3.0053 -0.9322 10 6 3.2787 4.4612 0.5816 11 7 2.1660 5.1344 0.3931 12 14 4.4552 4.9638 1.9427 13 1 5.5073 5.8512 1.3849 14 1 3.7070 5.6880 3.0014 15 1 5.0868 3.7519 2.5237 16 6 6.0265 3.5850 -0.2087 17 6 6.8740 3.1694 -1.4288 18 6 8.3368 3.2785 -0.9291 19 6 8.2388 2.7713 0.5311 20 6 6.8938 3.3325 1.0370 21 6 3.5990 -0.7604 0.0016 22 6 4.7700 -1.7088 0.0030 23 7 2.2984 -1.1112 -0.0043 24 6 1.8040 -2.4902 -0.0113 25 6 1.6269 -2.9758 1.4287 26 6 2.4985 -4.1448 1.8923 27 6 1.0052 -4.3584 1.6366 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5136 30 1 -0.3634 0.8898 0.5142 31 1 1.9578 2.1238 -0.0004 32 1 1.9557 5.8926 0.9604 33 1 5.7684 4.6419 -0.2759 34 1 6.6460 2.1441 -1.7202 35 1 6.7029 3.8508 -2.2621 36 1 8.6775 4.3136 -0.9564 37 1 8.9973 2.6403 -1.5162 38 1 9.0636 3.1622 1.1269 39 1 8.2322 1.6816 0.5589 40 1 7.0573 4.2670 1.5738 41 1 6.4077 2.6073 1.6897 42 1 5.0515 -1.9371 1.0310 43 1 5.6130 -1.2462 -0.5103 44 1 4.4928 -2.6294 -0.5107 45 1 0.8455 -2.5300 -0.5287 46 1 2.5210 -3.1306 -0.5252 47 1 1.3908 -2.2028 2.1598 48 1 3.1983 -4.5676 1.1715 49 1 2.8361 -4.1408 2.9287 50 1 0.3604 -4.4948 2.5047 51 1 0.7224 -4.9219 0.7474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252014739.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:08 Heat of formation + Delta-G solvation = 47.185942 kcal Electronic energy + Delta-G solvation = -30149.590624 eV Core-core repulsion = 26436.898083 eV Total energy + Delta-G solvation = -3712.692541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.79358 -39.10373 -37.45015 -36.03088 -34.30044 -32.05019 -31.75601 -31.58870 -28.63911 -28.07999 -27.58951 -26.02701 -24.95166 -23.61137 -22.59956 -21.51717 -20.79578 -20.21942 -19.89592 -18.41321 -18.34524 -16.58691 -16.15506 -15.81987 -15.37399 -15.00842 -14.68859 -14.47557 -14.07824 -13.92269 -13.61864 -13.48326 -13.04844 -12.82887 -12.72975 -12.61478 -12.27778 -12.23752 -12.14506 -11.99150 -11.86089 -11.74142 -11.47083 -11.24463 -11.09936 -11.01077 -10.79285 -10.64903 -10.61234 -10.53174 -10.40351 -10.20245 -10.09734 -9.83573 -9.76541 -9.51667 -8.86954 -8.32219 -7.69710 -7.43367 -7.09237 -6.26745 -4.02335 2.58197 3.18313 3.24973 3.29566 3.37481 3.43313 3.62893 4.29186 4.49791 4.62043 4.68501 4.68976 4.75931 5.01670 5.10284 5.25205 5.29595 5.35409 5.37868 5.42708 5.43966 5.52587 5.60412 5.66317 5.67143 5.73517 5.87803 5.95114 6.00673 6.06649 6.09754 6.17831 6.24737 6.26566 6.31693 6.32848 6.42266 6.49992 6.55633 6.60845 6.63774 6.70109 6.94161 6.97104 7.05871 7.10550 7.25257 7.68735 7.78479 7.95651 8.02502 8.32220 8.44115 9.17384 9.58821 9.95377 10.80038 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013228 B = 0.004531 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.214690 B = 6178.564146 C = 7442.423816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.033 4.033 3 C -0.129 4.129 4 C -0.196 4.196 5 C 0.565 3.435 6 O -0.594 6.594 7 N -0.465 5.465 8 C -0.330 4.330 9 H 0.111 0.889 10 C 0.065 3.935 11 N -0.878 5.878 12 Si 0.874 3.126 13 H -0.275 1.275 14 H -0.296 1.296 15 H -0.252 1.252 16 C 0.133 3.867 17 C -0.124 4.124 18 C -0.119 4.119 19 C -0.111 4.111 20 C -0.133 4.133 21 C 0.070 3.930 22 C -0.075 4.075 23 N -0.439 5.439 24 C 0.135 3.865 25 C -0.169 4.169 26 C -0.175 4.175 27 C -0.174 4.174 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.182 0.818 32 H 0.272 0.728 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.111 0.889 48 H 0.095 0.905 49 H 0.094 0.906 50 H 0.095 0.905 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.232 -13.377 0.092 13.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.138 4.138 3 C -0.152 4.152 4 C -0.206 4.206 5 C 0.357 3.643 6 O -0.480 6.480 7 N -0.185 5.185 8 C -0.458 4.458 9 H 0.129 0.871 10 C -0.141 4.141 11 N -0.515 5.515 12 Si 0.702 3.298 13 H -0.202 1.202 14 H -0.223 1.223 15 H -0.176 1.176 16 C 0.029 3.971 17 C -0.162 4.162 18 C -0.157 4.157 19 C -0.148 4.148 20 C -0.172 4.172 21 C -0.045 4.045 22 C -0.133 4.133 23 N -0.118 5.118 24 C 0.013 3.987 25 C -0.188 4.188 26 C -0.212 4.212 27 C -0.212 4.212 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.199 0.801 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.065 0.935 45 H 0.106 0.894 46 H 0.103 0.897 47 H 0.129 0.871 48 H 0.114 0.886 49 H 0.113 0.887 50 H 0.114 0.886 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.020 -13.738 0.202 13.740 hybrid contribution 0.244 0.594 0.839 1.056 sum 0.264 -13.145 1.041 13.188 Atomic orbital electron populations 1.20187 0.88987 1.02344 1.01628 1.20288 0.93072 0.85753 1.14722 1.23245 0.90723 0.98958 1.02276 1.20426 0.94059 0.90753 1.15359 1.17458 0.86965 0.82250 0.77619 1.90558 1.28986 1.73336 1.55077 1.43559 1.05140 1.04322 1.65519 1.19304 0.90771 1.14343 1.21355 0.87140 1.25478 0.95756 0.96218 0.96602 1.69656 1.24066 1.19079 1.38710 0.87111 0.80466 0.79746 0.82496 1.20157 1.22308 1.17561 1.21805 0.86107 0.95514 0.93723 1.22636 0.94007 1.02203 0.97366 1.22400 0.96807 0.99745 0.96721 1.22222 0.95826 1.01698 0.95095 1.22684 0.96348 0.99821 0.98322 1.20355 0.84037 0.94127 1.05944 1.20319 0.95053 0.95627 1.02253 1.43304 1.05109 1.04908 1.58465 1.21244 1.00621 0.81879 0.94964 1.22722 1.05704 0.92283 0.98117 1.23040 0.93467 1.02011 1.02654 1.22946 0.96230 0.98594 1.03415 0.92114 0.92887 0.90368 0.80096 0.91793 0.89950 0.90492 0.92544 0.92558 0.92376 0.93476 0.90383 0.93521 0.90405 0.91579 0.88797 0.93488 0.89382 0.89748 0.87100 0.88624 0.88703 0.88615 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 9.79 36.01 0.35 -0.69 16 2 C -0.03 -0.59 6.84 -81.89 -0.56 -1.15 16 3 C -0.13 -2.80 9.04 -37.50 -0.34 -3.14 16 4 C -0.20 -4.39 6.18 -102.99 -0.64 -5.03 16 5 C 0.56 13.58 6.44 -12.63 -0.08 13.50 16 6 O -0.59 -14.15 10.88 5.23 0.06 -14.09 16 7 N -0.47 -11.37 1.98 -107.83 -0.21 -11.58 16 8 C -0.33 -8.60 6.97 -14.98 -0.10 -8.71 16 9 H 0.11 3.03 5.77 -52.49 -0.30 2.73 16 10 C 0.07 1.73 5.35 -17.46 -0.09 1.64 16 11 N -0.88 -24.26 13.96 55.50 0.77 -23.48 16 12 Si 0.87 21.23 23.06 -169.99 -3.92 17.31 16 13 H -0.28 -6.48 6.61 56.52 0.37 -6.11 16 14 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.25 -6.18 5.39 56.52 0.30 -5.88 16 16 C 0.13 2.98 2.10 -66.81 -0.14 2.84 16 17 C -0.12 -2.45 6.12 -25.03 -0.15 -2.61 16 18 C -0.12 -2.02 6.91 -24.70 -0.17 -2.19 16 19 C -0.11 -2.03 6.40 -25.07 -0.16 -2.19 16 20 C -0.13 -2.85 3.62 -25.61 -0.09 -2.94 16 21 C 0.07 1.33 6.93 -81.48 -0.56 0.76 16 22 C -0.08 -1.20 9.48 36.00 0.34 -0.86 16 23 N -0.44 -7.19 2.68 -107.67 -0.29 -7.48 16 24 C 0.14 1.60 5.64 -4.04 -0.02 1.58 16 25 C -0.17 -1.84 6.01 -90.62 -0.54 -2.39 16 26 C -0.17 -1.64 10.18 -26.73 -0.27 -1.91 16 27 C -0.17 -1.45 10.25 -26.73 -0.27 -1.72 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.63 7.60 -51.93 -0.39 0.24 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.18 4.39 5.05 -52.49 -0.27 4.12 16 32 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.08 1.93 5.73 -51.93 -0.30 1.64 16 34 H 0.08 1.65 6.52 -51.92 -0.34 1.31 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.52 7.17 -51.93 -0.37 1.15 16 40 H 0.05 0.96 6.52 -51.93 -0.34 0.62 16 41 H 0.08 1.85 5.80 -51.93 -0.30 1.55 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.09 1.67 6.68 -51.93 -0.35 1.33 16 44 H 0.05 0.61 6.92 -51.93 -0.36 0.25 16 45 H 0.09 0.92 7.52 -51.93 -0.39 0.53 16 46 H 0.08 0.90 6.61 -51.93 -0.34 0.56 16 47 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 48 H 0.10 0.83 8.03 -51.93 -0.42 0.41 16 49 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -29.07 379.71 -9.76 -38.84 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -8.38 Total: 9.97 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -3.52 Total: -15.20 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.27 Total: -42.55 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.06 Total: -14.09 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -3.92 Total: 17.31 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.07 -9.76 -38.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252014739.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.022 kcal (2) G-P(sol) polarization free energy of solvation -29.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds