Wall clock time and date at job start Tue Mar 31 2020 15:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.29781 * 118.53254 * 2 1 4 4 C 1.49919 * 122.80824 * 180.02562 * 3 2 1 5 5 C 1.49906 * 111.18900 * 19.50712 * 4 3 2 6 6 C 1.29833 * 122.83847 * 340.43763 * 5 4 3 7 7 C 1.49907 * 118.58087 * 179.91364 * 2 1 3 8 8 H 1.08997 * 109.13741 * 280.84332 * 7 2 1 9 9 C 1.50707 * 109.13311 * 40.02103 * 7 2 1 10 10 O 1.21284 * 119.99849 * 38.55080 * 9 7 2 11 11 N 1.34779 * 119.99977 * 218.55177 * 9 7 2 12 12 C 1.47673 * 134.45021 * 179.97438 * 11 9 7 13 13 C 1.53447 * 85.97222 * 155.70878 * 12 11 9 14 14 C 1.47667 * 134.45465 * 359.97438 * 11 9 7 15 15 C 1.52724 * 113.66578 * 137.76008 * 13 12 11 16 16 C 1.53306 * 108.88196 * 185.25665 * 15 13 12 17 17 C 1.53018 * 109.18208 * 304.60236 * 16 15 13 18 18 N 1.46822 * 109.78557 * 60.98928 * 17 16 15 19 19 C 1.46905 * 110.99708 * 172.41462 * 18 17 16 20 20 C 1.50700 * 109.47050 * 66.04557 * 19 18 17 21 21 H 1.07997 * 120.00244 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99406 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00575 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99570 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47274 * 270.00011 * 24 22 20 26 26 H 1.48497 * 109.47323 * 30.00254 * 24 22 20 27 27 H 1.48500 * 109.47303 * 150.00152 * 24 22 20 28 28 C 1.47021 * 111.16017 * 296.48022 * 18 17 16 29 29 H 1.08993 * 109.47602 * 205.11078 * 1 2 3 30 30 H 1.09004 * 109.46942 * 325.11196 * 1 2 3 31 31 H 1.08993 * 109.47020 * 85.10547 * 1 2 3 32 32 H 1.07996 * 118.61055 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.13400 * 259.06354 * 4 3 2 34 34 H 1.09001 * 109.13523 * 139.94877 * 4 3 2 35 35 H 1.07999 * 118.58003 * 160.45433 * 5 4 3 36 36 H 1.07996 * 118.57636 * 180.02562 * 6 5 4 37 37 H 1.09007 * 113.79183 * 41.44694 * 12 11 9 38 38 H 1.08997 * 113.90005 * 269.98169 * 12 11 9 39 39 H 1.09003 * 113.79200 * 90.02324 * 14 11 9 40 40 H 1.09005 * 113.79106 * 318.55122 * 14 11 9 41 41 H 1.09000 * 109.57007 * 65.43740 * 15 13 12 42 42 H 1.09000 * 109.56552 * 305.07456 * 15 13 12 43 43 H 1.08999 * 109.51863 * 184.69370 * 16 15 13 44 44 H 1.08999 * 109.52013 * 64.51628 * 16 15 13 45 45 H 1.09001 * 109.41930 * 300.89188 * 17 16 15 46 46 H 1.08996 * 109.36533 * 181.04972 * 17 16 15 47 47 H 1.08999 * 109.47228 * 306.04302 * 19 18 17 48 48 H 1.09004 * 109.46635 * 186.04349 * 19 18 17 49 49 H 0.97000 * 120.00021 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.50426 * 179.22197 * 28 18 17 51 51 H 1.09000 * 109.50425 * 299.34159 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1269 1.1402 0.0000 4 6 3.6219 1.2520 -0.0006 5 6 4.2603 -0.0214 -0.4678 6 6 3.6397 -1.1617 -0.4668 7 6 2.2242 -1.3164 0.0020 8 1 2.2250 -1.7213 1.0139 9 6 1.5030 -2.2732 -0.9122 10 8 1.0301 -1.8749 -1.9556 11 7 1.3835 -3.5714 -0.5702 12 6 0.7628 -4.7539 -1.2003 13 6 1.7519 -5.5815 -0.3688 14 6 1.8207 -4.3810 0.5848 15 6 1.1317 -6.8274 0.2601 16 6 2.1718 -7.4959 1.1665 17 6 3.4363 -7.7830 0.3539 18 7 3.9963 -6.5249 -0.1551 19 6 5.3045 -6.7479 -0.7852 20 6 5.1289 -7.5891 -2.0232 21 1 4.1440 -7.9241 -2.3132 22 6 6.2256 -7.9300 -2.7862 23 7 7.4249 -7.5215 -2.4334 24 14 6.0080 -8.9732 -4.3204 25 1 6.1217 -10.4099 -3.9623 26 1 4.6697 -8.7143 -4.9094 27 1 7.0598 -8.6249 -5.3092 28 6 3.0675 -5.8692 -1.0872 29 1 -0.3634 -0.9304 0.4361 30 1 -0.3633 0.8430 0.5878 31 1 -0.3633 0.0877 -1.0239 32 1 1.5410 2.0474 -0.0004 33 1 3.9641 1.4732 1.0105 34 1 3.9192 2.0648 -0.6631 35 1 5.2806 0.0113 -0.8203 36 1 4.1662 -2.0367 -0.8183 37 1 0.9307 -4.8182 -2.2755 38 1 -0.2801 -4.9060 -0.9226 39 1 1.0925 -4.4206 1.3949 40 1 2.8290 -4.1491 0.9279 41 1 0.8313 -7.5216 -0.5247 42 1 0.2612 -6.5431 0.8513 43 1 1.7688 -8.4309 1.5555 44 1 2.4145 -6.8303 1.9948 45 1 3.1884 -8.4346 -0.4840 46 1 4.1711 -8.2753 0.9908 47 1 5.9617 -7.2641 -0.0854 48 1 5.7450 -5.7886 -1.0572 49 1 8.1963 -7.7611 -2.9704 50 1 3.5032 -4.9334 -1.4371 51 1 2.8818 -6.5253 -1.9377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277936391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:04 Heat of formation + Delta-G solvation = 26.105220 kcal Electronic energy + Delta-G solvation = -29434.177640 eV Core-core repulsion = 25720.570970 eV Total energy + Delta-G solvation = -3713.606670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.89600 -39.47797 -37.54780 -36.39034 -33.37743 -33.03968 -31.87231 -31.45176 -29.90878 -27.39150 -26.90104 -26.17651 -25.91438 -24.11691 -24.03800 -21.82290 -20.69258 -20.39742 -19.25673 -18.18965 -17.09435 -16.68652 -16.37014 -15.80160 -15.64902 -15.10560 -15.01438 -14.78357 -14.36555 -14.32147 -14.09555 -13.66518 -13.47413 -13.35618 -13.24103 -12.86663 -12.72623 -12.45631 -12.36519 -12.29511 -12.15281 -12.00788 -11.75562 -11.50504 -11.31758 -11.10161 -10.94331 -10.62017 -10.49160 -10.43479 -10.42967 -10.22502 -10.02992 -9.80737 -9.65197 -9.52813 -9.40213 -8.60696 -8.53868 -8.46124 -7.23132 -6.06137 -4.15516 1.96402 2.22863 2.77195 2.97983 3.24881 3.32454 3.34842 4.33758 4.37902 4.46186 4.49099 4.69545 4.89976 4.94997 5.06269 5.12374 5.15384 5.21679 5.24771 5.35186 5.38433 5.40767 5.44449 5.47837 5.54164 5.62503 5.66055 5.68314 5.69605 5.81688 5.87936 5.89668 5.97656 6.03185 6.12866 6.18064 6.19098 6.24282 6.31620 6.45312 6.65312 6.67651 6.69928 6.73227 6.80461 6.83940 7.23889 7.47924 7.82472 7.85896 8.00029 8.23900 8.25411 8.28657 8.94525 9.51809 10.98850 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012541 B = 0.003490 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.165120 B = 8020.354736 C = 9107.794391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.101 4.101 3 C -0.158 4.158 4 C -0.061 4.061 5 C -0.147 4.147 6 C -0.143 4.143 7 C -0.029 4.029 8 H 0.104 0.896 9 C 0.549 3.451 10 O -0.539 6.539 11 N -0.639 5.639 12 C 0.112 3.888 13 C -0.085 4.085 14 C 0.114 3.886 15 C -0.102 4.102 16 C -0.115 4.115 17 C 0.061 3.939 18 N -0.538 5.538 19 C 0.189 3.811 20 C -0.551 4.551 21 H 0.057 0.943 22 C 0.066 3.934 23 N -0.890 5.890 24 Si 0.887 3.113 25 H -0.280 1.280 26 H -0.275 1.275 27 H -0.285 1.285 28 C 0.091 3.909 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.036 0.964 46 H 0.064 0.936 47 H 0.031 0.969 48 H 0.030 0.970 49 H 0.262 0.738 50 H 0.066 0.934 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.650 11.318 9.767 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.102 4.102 3 C -0.176 4.176 4 C -0.098 4.098 5 C -0.165 4.165 6 C -0.161 4.161 7 C -0.050 4.050 8 H 0.122 0.878 9 C 0.338 3.662 10 O -0.416 6.416 11 N -0.374 5.374 12 C -0.011 4.011 13 C -0.086 4.086 14 C -0.008 4.008 15 C -0.140 4.140 16 C -0.153 4.153 17 C -0.067 4.067 18 N -0.262 5.262 19 C 0.064 3.936 20 C -0.590 4.590 21 H 0.075 0.925 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.715 3.285 25 H -0.206 1.206 26 H -0.200 1.200 27 H -0.211 1.211 28 C -0.037 4.037 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.054 0.946 46 H 0.083 0.917 47 H 0.049 0.951 48 H 0.048 0.952 49 H 0.072 0.928 50 H 0.085 0.915 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.606 12.067 9.494 19.866 hybrid contribution -0.038 -1.282 -1.692 2.123 sum -12.644 10.785 7.801 18.359 Atomic orbital electron populations 1.20873 0.91896 1.01741 1.02671 1.20488 0.95800 0.93118 1.00758 1.21915 0.95857 0.97195 1.02671 1.19245 0.92370 0.96599 1.01538 1.22157 1.00135 0.93941 1.00262 1.21820 0.93763 0.99084 1.01474 1.18797 0.93398 0.93266 0.99518 0.87829 1.19961 0.79298 0.80370 0.86596 1.90679 1.49325 1.76282 1.25295 1.50068 1.56656 1.06506 1.24207 1.23224 0.97002 0.81148 0.99680 1.22198 0.96716 0.93798 0.95860 1.23293 1.00907 0.86962 0.89670 1.21460 0.97548 0.96025 0.98982 1.21630 0.95595 0.99742 0.98302 1.21849 0.94937 0.92246 0.97696 1.62472 1.04624 1.22379 1.36719 1.19723 0.84628 0.96578 0.92718 1.21739 0.93496 1.33429 1.10314 0.92514 1.24949 0.95228 0.95856 0.97645 1.69937 0.98410 1.45351 1.39133 0.86672 0.77928 0.80709 0.83194 1.20627 1.19960 1.21117 1.21531 0.89329 0.99268 0.93614 0.92534 0.91929 0.90713 0.86954 0.89622 0.90156 0.86587 0.86362 0.90073 0.89983 0.90199 0.88959 0.91682 0.92115 0.92313 0.91684 0.94597 0.91719 0.95075 0.95208 0.92791 0.91515 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 8.69 36.01 0.31 -0.97 16 2 C -0.10 -1.24 5.22 -101.11 -0.53 -1.77 16 3 C -0.16 -1.71 9.49 -36.06 -0.34 -2.06 16 4 C -0.06 -0.60 6.27 -29.79 -0.19 -0.79 16 5 C -0.15 -1.74 9.92 -36.08 -0.36 -2.10 16 6 C -0.14 -1.94 9.13 -36.08 -0.33 -2.27 16 7 C -0.03 -0.38 2.79 -94.84 -0.26 -0.65 16 8 H 0.10 1.20 7.62 -51.93 -0.40 0.81 16 9 C 0.55 8.56 6.05 -10.98 -0.07 8.49 16 10 O -0.54 -10.28 16.44 5.55 0.09 -10.18 16 11 N -0.64 -8.98 3.45 -180.45 -0.62 -9.60 16 12 C 0.11 1.49 7.97 -3.18 -0.03 1.47 16 13 C -0.08 -1.15 0.86 -154.46 -0.13 -1.28 16 14 C 0.11 1.39 7.25 -3.17 -0.02 1.37 16 15 C -0.10 -1.22 5.18 -26.71 -0.14 -1.36 16 16 C -0.11 -1.50 6.04 -26.56 -0.16 -1.66 16 17 C 0.06 1.08 5.05 -3.86 -0.02 1.06 16 18 N -0.54 -10.56 4.87 -236.25 -1.15 -11.71 16 19 C 0.19 4.66 5.14 -4.97 -0.03 4.63 16 20 C -0.55 -14.67 7.74 -34.44 -0.27 -14.94 16 21 H 0.06 1.50 5.83 -52.49 -0.31 1.19 16 22 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 23 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 24 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 C 0.09 1.66 4.16 -3.94 -0.02 1.64 16 29 H 0.06 0.63 7.71 -51.93 -0.40 0.23 16 30 H 0.06 0.55 8.03 -51.93 -0.42 0.14 16 31 H 0.07 0.94 7.85 -51.93 -0.41 0.54 16 32 H 0.11 1.01 7.93 -52.49 -0.42 0.60 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.08 1.19 8.09 -51.92 -0.42 0.77 16 38 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 39 H 0.08 0.79 8.02 -51.93 -0.42 0.37 16 40 H 0.09 1.20 8.09 -51.93 -0.42 0.78 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.59 8.04 -51.93 -0.42 0.17 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.82 8.11 -51.93 -0.42 0.39 16 45 H 0.04 0.70 7.08 -51.93 -0.37 0.33 16 46 H 0.06 1.17 8.03 -51.93 -0.42 0.75 16 47 H 0.03 0.82 8.04 -51.93 -0.42 0.41 16 48 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 50 H 0.07 1.33 8.01 -51.93 -0.42 0.91 16 51 H 0.05 0.95 6.48 -51.93 -0.34 0.61 16 LS Contribution 397.52 15.07 5.99 5.99 Total: -1.00 -30.93 397.52 -11.55 -42.48 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.91 Total: 1.33 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -2.67 Total: -9.46 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -1.04 Total: -46.37 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.93 -11.55 -42.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.588 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds