Wall clock time and date at job start Tue Mar 31 2020 15:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.29781 * 118.53254 * 2 1 4 4 C 1.49919 * 122.80824 * 180.02562 * 3 2 1 5 5 C 1.49906 * 111.18900 * 19.50712 * 4 3 2 6 6 C 1.29833 * 122.83847 * 340.43763 * 5 4 3 7 7 C 1.49907 * 118.58087 * 179.91364 * 2 1 3 8 8 H 1.08997 * 109.13741 * 280.84332 * 7 2 1 9 9 C 1.50707 * 109.13311 * 40.02103 * 7 2 1 10 10 O 1.21284 * 119.99849 * 38.55080 * 9 7 2 11 11 N 1.34779 * 119.99977 * 218.55177 * 9 7 2 12 12 C 1.47673 * 134.45021 * 179.97438 * 11 9 7 13 13 C 1.53447 * 85.97222 * 155.70878 * 12 11 9 14 14 C 1.47667 * 134.45465 * 359.97438 * 11 9 7 15 15 C 1.52724 * 113.66578 * 137.76008 * 13 12 11 16 16 C 1.53306 * 108.88196 * 185.25665 * 15 13 12 17 17 C 1.53018 * 109.18208 * 304.60236 * 16 15 13 18 18 N 1.46822 * 109.78557 * 60.98928 * 17 16 15 19 19 C 1.46905 * 110.99708 * 172.41462 * 18 17 16 20 20 C 1.50700 * 109.47050 * 66.04557 * 19 18 17 21 21 H 1.07997 * 120.00244 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99406 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00575 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99570 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47274 * 270.00011 * 24 22 20 26 26 H 1.48497 * 109.47323 * 30.00254 * 24 22 20 27 27 H 1.48500 * 109.47303 * 150.00152 * 24 22 20 28 28 C 1.47021 * 111.16017 * 296.48022 * 18 17 16 29 29 H 1.08993 * 109.47602 * 205.11078 * 1 2 3 30 30 H 1.09004 * 109.46942 * 325.11196 * 1 2 3 31 31 H 1.08993 * 109.47020 * 85.10547 * 1 2 3 32 32 H 1.07996 * 118.61055 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.13400 * 259.06354 * 4 3 2 34 34 H 1.09001 * 109.13523 * 139.94877 * 4 3 2 35 35 H 1.07999 * 118.58003 * 160.45433 * 5 4 3 36 36 H 1.07996 * 118.57636 * 180.02562 * 6 5 4 37 37 H 1.09007 * 113.79183 * 41.44694 * 12 11 9 38 38 H 1.08997 * 113.90005 * 269.98169 * 12 11 9 39 39 H 1.09003 * 113.79200 * 90.02324 * 14 11 9 40 40 H 1.09005 * 113.79106 * 318.55122 * 14 11 9 41 41 H 1.09000 * 109.57007 * 65.43740 * 15 13 12 42 42 H 1.09000 * 109.56552 * 305.07456 * 15 13 12 43 43 H 1.08999 * 109.51863 * 184.69370 * 16 15 13 44 44 H 1.08999 * 109.52013 * 64.51628 * 16 15 13 45 45 H 1.09001 * 109.41930 * 300.89188 * 17 16 15 46 46 H 1.08996 * 109.36533 * 181.04972 * 17 16 15 47 47 H 1.08999 * 109.47228 * 306.04302 * 19 18 17 48 48 H 1.09004 * 109.46635 * 186.04349 * 19 18 17 49 49 H 0.97000 * 120.00021 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.50426 * 179.22197 * 28 18 17 51 51 H 1.09000 * 109.50425 * 299.34159 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1269 1.1402 0.0000 4 6 3.6219 1.2520 -0.0006 5 6 4.2603 -0.0214 -0.4678 6 6 3.6397 -1.1617 -0.4668 7 6 2.2242 -1.3164 0.0020 8 1 2.2250 -1.7213 1.0139 9 6 1.5030 -2.2732 -0.9122 10 8 1.0301 -1.8749 -1.9556 11 7 1.3835 -3.5714 -0.5702 12 6 0.7628 -4.7539 -1.2003 13 6 1.7519 -5.5815 -0.3688 14 6 1.8207 -4.3810 0.5848 15 6 1.1317 -6.8274 0.2601 16 6 2.1718 -7.4959 1.1665 17 6 3.4363 -7.7830 0.3539 18 7 3.9963 -6.5249 -0.1551 19 6 5.3045 -6.7479 -0.7852 20 6 5.1289 -7.5891 -2.0232 21 1 4.1440 -7.9241 -2.3132 22 6 6.2256 -7.9300 -2.7862 23 7 7.4249 -7.5215 -2.4334 24 14 6.0080 -8.9732 -4.3204 25 1 6.1217 -10.4099 -3.9623 26 1 4.6697 -8.7143 -4.9094 27 1 7.0598 -8.6249 -5.3092 28 6 3.0675 -5.8692 -1.0872 29 1 -0.3634 -0.9304 0.4361 30 1 -0.3633 0.8430 0.5878 31 1 -0.3633 0.0877 -1.0239 32 1 1.5410 2.0474 -0.0004 33 1 3.9641 1.4732 1.0105 34 1 3.9192 2.0648 -0.6631 35 1 5.2806 0.0113 -0.8203 36 1 4.1662 -2.0367 -0.8183 37 1 0.9307 -4.8182 -2.2755 38 1 -0.2801 -4.9060 -0.9226 39 1 1.0925 -4.4206 1.3949 40 1 2.8290 -4.1491 0.9279 41 1 0.8313 -7.5216 -0.5247 42 1 0.2612 -6.5431 0.8513 43 1 1.7688 -8.4309 1.5555 44 1 2.4145 -6.8303 1.9948 45 1 3.1884 -8.4346 -0.4840 46 1 4.1711 -8.2753 0.9908 47 1 5.9617 -7.2641 -0.0854 48 1 5.7450 -5.7886 -1.0572 49 1 8.1963 -7.7611 -2.9704 50 1 3.5032 -4.9334 -1.4371 51 1 2.8818 -6.5253 -1.9377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277936391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:03 Heat of formation + Delta-G solvation = 7.895618 kcal Electronic energy + Delta-G solvation = -29434.967267 eV Core-core repulsion = 25720.570970 eV Total energy + Delta-G solvation = -3714.396297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.04968 -40.57750 -38.73464 -37.80857 -35.12789 -33.94451 -33.52430 -32.51874 -31.08472 -28.88787 -28.30418 -27.23582 -27.05585 -25.84948 -25.00788 -23.27800 -22.08064 -21.46691 -20.43467 -19.52028 -18.41063 -18.16602 -17.68084 -16.96471 -16.80168 -16.60316 -16.12115 -15.92928 -15.91341 -15.55404 -15.31004 -15.02526 -14.70806 -14.44507 -14.30669 -14.26166 -13.88598 -13.67793 -13.60656 -13.43286 -13.21816 -13.12619 -13.03378 -13.00643 -12.87211 -12.71657 -12.27423 -12.20718 -12.13533 -11.93102 -11.81835 -11.53084 -11.38334 -11.23833 -11.04846 -10.81082 -10.63584 -10.36462 -9.67772 -9.50662 -9.02618 -8.18373 -6.38525 1.03990 1.27456 1.32222 1.33528 1.43205 1.63221 1.90357 2.33230 3.05862 3.10462 3.40742 3.57466 3.60802 3.74468 3.87107 3.98566 4.09600 4.16653 4.25263 4.27409 4.34987 4.40918 4.45181 4.50716 4.59965 4.61454 4.66698 4.74663 4.77454 4.81406 4.83860 4.89229 4.92459 4.99208 5.00970 5.03956 5.10733 5.14218 5.17682 5.19905 5.27513 5.28241 5.31973 5.42750 5.55994 5.71787 5.76686 5.81263 5.97055 6.02629 6.23634 6.56183 6.70048 6.83319 7.11256 7.33229 8.83257 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012541 B = 0.003490 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.165120 B = 8020.354736 C = 9107.794391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.129 4.129 3 C -0.150 4.150 4 C -0.064 4.064 5 C -0.136 4.136 6 C -0.175 4.175 7 C -0.022 4.022 8 H 0.116 0.884 9 C 0.543 3.457 10 O -0.584 6.584 11 N -0.644 5.644 12 C 0.112 3.888 13 C -0.080 4.080 14 C 0.124 3.876 15 C -0.096 4.096 16 C -0.104 4.104 17 C 0.058 3.942 18 N -0.531 5.531 19 C 0.202 3.798 20 C -0.557 4.557 21 H 0.056 0.944 22 C 0.012 3.988 23 N -0.925 5.925 24 Si 0.953 3.047 25 H -0.269 1.269 26 H -0.271 1.271 27 H -0.282 1.282 28 C 0.100 3.900 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.135 0.865 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.091 0.909 37 H 0.057 0.943 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.013 0.987 46 H 0.054 0.946 47 H 0.008 0.992 48 H -0.004 1.004 49 H 0.265 0.735 50 H 0.036 0.964 51 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.014 11.858 11.561 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.130 4.130 3 C -0.168 4.168 4 C -0.100 4.100 5 C -0.154 4.154 6 C -0.193 4.193 7 C -0.042 4.042 8 H 0.134 0.866 9 C 0.333 3.667 10 O -0.464 6.464 11 N -0.378 5.378 12 C -0.010 4.010 13 C -0.082 4.082 14 C 0.003 3.997 15 C -0.133 4.133 16 C -0.142 4.142 17 C -0.070 4.070 18 N -0.254 5.254 19 C 0.075 3.925 20 C -0.596 4.596 21 H 0.074 0.926 22 C -0.187 4.187 23 N -0.565 5.565 24 Si 0.778 3.222 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.208 1.208 28 C -0.029 4.029 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.153 0.847 33 H 0.128 0.872 34 H 0.118 0.882 35 H 0.141 0.859 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.122 0.878 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.032 0.968 46 H 0.072 0.928 47 H 0.026 0.974 48 H 0.015 0.985 49 H 0.074 0.926 50 H 0.054 0.946 51 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -14.982 12.577 11.321 22.601 hybrid contribution 0.801 -1.426 -2.266 2.794 sum -14.181 11.151 9.055 20.185 Atomic orbital electron populations 1.20807 0.91275 1.02683 1.01705 1.20625 0.96447 0.93015 1.02903 1.22243 0.96530 0.97522 1.00465 1.19410 0.91757 0.95650 1.03205 1.22486 1.00420 0.94346 0.98129 1.21762 0.94561 0.99007 1.04002 1.18761 0.92596 0.93564 0.99313 0.86622 1.20466 0.78813 0.81034 0.86378 1.90641 1.51346 1.77235 1.27186 1.50216 1.56221 1.06378 1.24969 1.23354 0.98688 0.80574 0.98382 1.22004 0.94071 0.95786 0.96303 1.23433 1.01646 0.84884 0.89762 1.21489 0.98319 0.94460 0.99069 1.21585 0.93089 1.01622 0.97869 1.21975 0.97146 0.90533 0.97339 1.62399 1.03190 1.23753 1.36033 1.19355 0.87032 0.94099 0.91972 1.21993 0.93428 1.33229 1.10904 0.92626 1.25793 0.94948 0.97169 1.00815 1.70057 0.99195 1.46690 1.40543 0.85630 0.77890 0.79329 0.79332 1.19479 1.19546 1.20761 1.21387 0.91450 0.96860 0.93212 0.92818 0.89460 0.92871 0.84714 0.87218 0.88167 0.85877 0.89088 0.92477 0.86303 0.85840 0.90160 0.91939 0.87753 0.89616 0.90333 0.96821 0.92756 0.97426 0.98545 0.92625 0.94560 0.96456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.28 8.69 71.24 0.62 -1.66 16 2 C -0.13 -3.04 5.22 -15.48 -0.08 -3.12 16 3 C -0.15 -2.90 9.49 26.66 0.25 -2.65 16 4 C -0.06 -1.11 6.27 28.61 0.18 -0.93 16 5 C -0.14 -3.16 9.92 26.60 0.26 -2.89 16 6 C -0.17 -4.94 9.13 26.60 0.24 -4.69 16 7 C -0.02 -0.58 2.79 -13.52 -0.04 -0.61 16 8 H 0.12 2.60 7.62 -2.39 -0.02 2.59 16 9 C 0.54 17.28 6.05 87.66 0.53 17.81 16 10 O -0.58 -23.11 16.44 -3.04 -0.05 -23.16 16 11 N -0.64 -17.86 3.45 -843.21 -2.91 -20.77 16 12 C 0.11 2.87 7.97 86.30 0.69 3.56 16 13 C -0.08 -2.09 0.86 -52.05 -0.04 -2.14 16 14 C 0.12 2.78 7.25 86.31 0.63 3.40 16 15 C -0.10 -1.94 5.18 30.61 0.16 -1.78 16 16 C -0.10 -2.39 6.04 30.70 0.19 -2.21 16 17 C 0.06 2.06 5.05 86.32 0.44 2.49 16 18 N -0.53 -21.71 4.87 -901.37 -4.39 -26.10 16 19 C 0.20 10.65 5.14 85.56 0.44 11.09 16 20 C -0.56 -31.05 7.74 25.60 0.20 -30.85 16 21 H 0.06 3.06 5.83 -2.91 -0.02 3.04 16 22 C 0.01 0.70 5.46 84.66 0.46 1.16 16 23 N -0.93 -55.65 13.29 21.45 0.28 -55.36 16 24 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 28 C 0.10 3.80 4.16 86.16 0.36 4.16 16 29 H 0.05 1.12 7.71 -2.39 -0.02 1.11 16 30 H 0.09 1.34 8.03 -2.38 -0.02 1.32 16 31 H 0.05 1.34 7.85 -2.39 -0.02 1.32 16 32 H 0.14 1.99 7.93 -2.91 -0.02 1.97 16 33 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 36 H 0.09 2.98 8.06 -2.91 -0.02 2.95 16 37 H 0.06 1.73 8.09 -2.38 -0.02 1.71 16 38 H 0.12 2.23 8.09 -2.39 -0.02 2.21 16 39 H 0.12 1.81 8.02 -2.39 -0.02 1.79 16 40 H 0.08 2.03 8.09 -2.38 -0.02 2.01 16 41 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.10 1.36 8.04 -2.39 -0.02 1.34 16 43 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.08 1.66 8.11 -2.39 -0.02 1.64 16 45 H 0.01 0.53 7.08 -2.39 -0.02 0.52 16 46 H 0.05 1.99 8.03 -2.39 -0.02 1.98 16 47 H 0.01 0.43 8.04 -2.39 -0.02 0.41 16 48 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 49 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 50 H 0.04 1.57 8.01 -2.39 -0.02 1.55 16 51 H 0.02 0.75 6.48 -2.39 -0.02 0.74 16 Total: -1.00 -72.81 397.52 1.33 -71.49 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.89 Total: 17.19 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 5.48 Total: -9.86 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -7.02 Total: -102.23 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.05 Total: -23.16 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -72.81 1.33 -71.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.382 kcal (2) G-P(sol) polarization free energy of solvation -72.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds