Wall clock time and date at job start Tue Mar 31 2020 15:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29824 * 118.58284 * 2 1 4 4 C 1.49913 * 122.83734 * 179.97438 * 3 2 1 5 5 C 1.49910 * 111.19341 * 340.48440 * 4 3 2 6 6 C 1.29800 * 122.84221 * 19.51970 * 5 4 3 7 7 C 1.49908 * 122.84647 * 359.97438 * 6 5 4 8 8 H 1.08999 * 109.09012 * 100.88839 * 7 6 5 9 9 C 1.50698 * 109.13597 * 220.04306 * 7 6 5 10 10 O 1.21280 * 120.00248 * 121.69213 * 9 7 6 11 11 N 1.34781 * 120.00053 * 301.68954 * 9 7 6 12 12 C 1.47663 * 134.45507 * 180.02562 * 11 9 7 13 13 C 1.53441 * 85.97557 * 155.70761 * 12 11 9 14 14 C 1.47668 * 134.44800 * 0.02562 * 11 9 7 15 15 C 1.52734 * 113.66743 * 137.75528 * 13 12 11 16 16 C 1.53293 * 108.88475 * 185.25604 * 15 13 12 17 17 C 1.53024 * 109.18366 * 304.60634 * 16 15 13 18 18 N 1.46822 * 109.78485 * 60.98558 * 17 16 15 19 19 C 1.46903 * 110.99758 * 172.41525 * 18 17 16 20 20 C 1.50694 * 109.47066 * 66.04614 * 19 18 17 21 21 H 1.08000 * 120.00563 * 359.97438 * 20 19 18 22 22 C 1.37885 * 119.99902 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99913 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47353 * 269.99586 * 24 22 20 26 26 H 1.48501 * 109.47293 * 30.00037 * 24 22 20 27 27 H 1.48504 * 109.46680 * 149.99835 * 24 22 20 28 28 C 1.47013 * 111.16292 * 296.48372 * 18 17 16 29 29 H 1.08998 * 109.47297 * 270.02532 * 1 2 3 30 30 H 1.09001 * 109.47003 * 30.01901 * 1 2 3 31 31 H 1.08995 * 109.47234 * 150.02436 * 1 2 3 32 32 H 1.08001 * 118.58106 * 359.97438 * 3 2 1 33 33 H 1.09008 * 109.13361 * 100.92151 * 4 3 2 34 34 H 1.09001 * 109.13929 * 220.09484 * 4 3 2 35 35 H 1.08003 * 118.58279 * 199.53866 * 5 4 3 36 36 H 1.08005 * 118.57270 * 180.02562 * 6 5 4 37 37 H 1.08999 * 113.79712 * 41.44078 * 12 11 9 38 38 H 1.09003 * 113.89872 * 269.98566 * 12 11 9 39 39 H 1.09008 * 113.79251 * 90.02998 * 14 11 9 40 40 H 1.08997 * 113.79727 * 318.54884 * 14 11 9 41 41 H 1.09005 * 109.56879 * 65.43647 * 15 13 12 42 42 H 1.09000 * 109.66895 * 305.14156 * 15 13 12 43 43 H 1.09001 * 109.52239 * 184.69561 * 16 15 13 44 44 H 1.08998 * 109.52121 * 64.51501 * 16 15 13 45 45 H 1.08992 * 109.41634 * 300.89157 * 17 16 15 46 46 H 1.09005 * 109.36424 * 181.04650 * 17 16 15 47 47 H 1.09007 * 109.47052 * 306.04299 * 19 18 17 48 48 H 1.09003 * 109.46808 * 186.04992 * 19 18 17 49 49 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 50 50 H 1.08997 * 109.50703 * 179.22767 * 28 18 17 51 51 H 1.09001 * 109.50085 * 299.33960 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1281 1.1400 0.0000 4 6 3.6231 1.2512 0.0006 5 6 4.2611 -0.0222 0.4680 6 6 3.6401 -1.1620 0.4680 7 6 2.2240 -1.3164 0.0010 8 1 2.2244 -1.7229 -1.0104 9 6 1.5031 -2.2716 0.9169 10 8 0.5069 -1.9107 1.5070 11 7 1.9655 -3.5271 1.0803 12 6 1.5290 -4.6951 1.8713 13 6 2.2803 -5.5414 0.8351 14 6 3.1115 -4.2855 0.5400 15 6 3.0915 -6.6818 1.4468 16 6 3.8961 -7.3689 0.3375 17 6 2.9418 -7.8199 -0.7704 18 7 2.2563 -6.6536 -1.3410 19 6 1.4705 -7.0313 -2.5234 20 6 0.3437 -7.9415 -2.1078 21 1 0.2235 -8.2127 -1.0693 22 6 -0.5333 -8.4289 -3.0535 23 7 -0.3867 -8.0991 -4.3182 24 14 -1.9296 -9.5578 -2.5384 25 1 -1.4720 -10.9694 -2.5962 26 1 -2.3462 -9.2288 -1.1515 27 1 -3.0808 -9.3726 -3.4582 28 6 1.4118 -5.9904 -0.3369 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5134 32 1 1.5425 2.0475 -0.0004 33 1 3.9653 1.4721 -1.0106 34 1 3.9208 2.0635 0.6637 35 1 5.2815 0.0101 0.8204 36 1 4.1662 -2.0370 0.8204 37 1 0.4502 -4.8507 1.8673 38 1 1.9614 -4.7380 2.8710 39 1 4.0159 -4.2049 1.1432 40 1 3.2899 -4.1157 -0.5218 41 1 2.4170 -7.4029 1.9086 42 1 3.7726 -6.2850 2.1996 43 1 4.4143 -8.2361 0.7471 44 1 4.6241 -6.6684 -0.0717 45 1 2.2040 -8.5067 -0.3557 46 1 3.5087 -8.3254 -1.5522 47 1 2.1124 -7.5495 -3.2359 48 1 1.0607 -6.1348 -2.9888 49 1 -1.0035 -8.4423 -4.9835 50 1 0.9275 -5.1226 -0.7845 51 1 0.6533 -6.6880 0.0185 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277936392.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:07 Heat of formation + Delta-G solvation = 29.087169 kcal Electronic energy + Delta-G solvation = -29421.008103 eV Core-core repulsion = 25707.530740 eV Total energy + Delta-G solvation = -3713.477363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.94297 -39.49441 -37.56075 -36.45255 -33.43670 -32.94227 -31.88122 -31.50293 -29.87008 -27.39263 -26.88907 -26.20484 -25.74938 -24.15815 -24.08579 -21.84177 -20.61162 -20.48664 -19.31023 -18.18639 -17.09222 -16.66058 -16.34578 -15.92570 -15.67930 -15.21002 -15.07843 -14.59041 -14.37466 -14.36371 -14.11152 -13.70392 -13.52192 -13.36224 -13.26206 -12.91639 -12.52891 -12.47835 -12.38614 -12.13584 -12.05786 -11.89706 -11.75868 -11.52648 -11.29901 -11.10131 -10.94381 -10.63832 -10.53423 -10.44001 -10.38259 -10.21779 -10.00213 -9.80874 -9.64905 -9.52948 -9.47690 -8.63347 -8.48233 -8.45684 -7.23262 -6.06138 -4.15522 1.90610 2.18295 2.79038 2.95502 3.24828 3.32389 3.34716 4.32398 4.37645 4.39247 4.50099 4.66358 4.88685 4.91057 5.05999 5.09082 5.12424 5.18341 5.24715 5.37163 5.40537 5.44024 5.47175 5.50174 5.56044 5.65000 5.68375 5.72765 5.79542 5.86833 5.91061 5.96013 5.99305 6.03792 6.12410 6.17998 6.23982 6.31172 6.32266 6.44998 6.59167 6.65310 6.67210 6.67896 6.80162 6.89029 7.23908 7.47985 7.82659 7.85944 7.99937 8.23854 8.25390 8.27885 8.94524 9.51743 10.98884 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013432 B = 0.003324 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.126328 B = 8420.951237 C = 9288.239892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.093 4.093 3 C -0.170 4.170 4 C -0.061 4.061 5 C -0.146 4.146 6 C -0.149 4.149 7 C -0.035 4.035 8 H 0.117 0.883 9 C 0.548 3.452 10 O -0.539 6.539 11 N -0.638 5.638 12 C 0.113 3.887 13 C -0.085 4.085 14 C 0.115 3.885 15 C -0.102 4.102 16 C -0.115 4.115 17 C 0.062 3.938 18 N -0.539 5.539 19 C 0.189 3.811 20 C -0.551 4.551 21 H 0.057 0.943 22 C 0.066 3.934 23 N -0.890 5.890 24 Si 0.888 3.112 25 H -0.280 1.280 26 H -0.275 1.275 27 H -0.285 1.285 28 C 0.091 3.909 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.036 0.964 46 H 0.064 0.936 47 H 0.031 0.969 48 H 0.030 0.970 49 H 0.262 0.738 50 H 0.067 0.933 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.899 12.900 10.792 20.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.093 4.093 3 C -0.189 4.189 4 C -0.097 4.097 5 C -0.164 4.164 6 C -0.168 4.168 7 C -0.056 4.056 8 H 0.134 0.866 9 C 0.337 3.663 10 O -0.416 6.416 11 N -0.373 5.373 12 C -0.009 4.009 13 C -0.086 4.086 14 C -0.007 4.007 15 C -0.140 4.140 16 C -0.153 4.153 17 C -0.067 4.067 18 N -0.262 5.262 19 C 0.063 3.937 20 C -0.590 4.590 21 H 0.075 0.925 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.715 3.285 25 H -0.206 1.206 26 H -0.200 1.200 27 H -0.211 1.211 28 C -0.037 4.037 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.054 0.946 46 H 0.083 0.917 47 H 0.049 0.951 48 H 0.048 0.952 49 H 0.072 0.928 50 H 0.085 0.915 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.556 13.621 10.726 20.298 hybrid contribution -1.417 -1.383 0.420 2.024 sum 9.139 12.238 11.146 18.908 Atomic orbital electron populations 1.20883 0.91123 1.01153 1.03118 1.20608 0.96492 0.92709 0.99499 1.21898 0.95532 0.97350 1.04071 1.19234 0.92691 0.96266 1.01530 1.22173 0.99785 0.94285 1.00134 1.21928 0.94310 0.98693 1.01833 1.18835 0.92924 0.93630 1.00197 0.86575 1.19952 0.84251 0.80066 0.82013 1.90677 1.26242 1.75491 1.49166 1.49989 1.29864 1.10336 1.47069 1.23215 1.01173 0.81322 0.95230 1.22212 0.96336 0.93779 0.96307 1.23286 0.89430 0.87391 1.00602 1.21457 0.98227 0.96853 0.97491 1.21629 0.98130 0.99679 0.95830 1.21850 0.96048 0.92856 0.95966 1.62468 1.30630 1.25752 1.07375 1.19725 0.91211 0.95625 0.87107 1.21738 1.13149 1.30044 0.94048 0.92510 1.24956 0.97629 0.96251 0.94879 1.69940 1.37627 1.44528 1.00726 0.86667 0.82104 0.81163 0.78535 1.20639 1.19955 1.21112 1.21529 0.93245 0.98624 0.90344 0.89985 0.93091 0.92102 0.86942 0.89642 0.90330 0.86893 0.86726 0.90036 0.90046 0.90316 0.88951 0.91694 0.92144 0.92317 0.91699 0.94593 0.91722 0.95075 0.95188 0.92787 0.91477 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 8.17 36.01 0.29 -1.11 16 2 C -0.09 -1.19 5.38 -101.12 -0.54 -1.73 16 3 C -0.17 -1.84 9.49 -36.07 -0.34 -2.19 16 4 C -0.06 -0.54 6.27 -29.80 -0.19 -0.73 16 5 C -0.15 -1.39 9.92 -36.07 -0.36 -1.75 16 6 C -0.15 -1.64 8.79 -36.07 -0.32 -1.96 16 7 C -0.04 -0.46 2.74 -94.84 -0.26 -0.72 16 8 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 9 C 0.55 8.38 7.10 -10.98 -0.08 8.30 16 10 O -0.54 -9.78 14.01 5.56 0.08 -9.70 16 11 N -0.64 -8.82 3.39 -180.48 -0.61 -9.43 16 12 C 0.11 1.49 7.97 -3.18 -0.03 1.46 16 13 C -0.09 -1.15 0.86 -154.46 -0.13 -1.28 16 14 C 0.12 1.39 6.05 -3.17 -0.02 1.37 16 15 C -0.10 -1.22 5.18 -26.72 -0.14 -1.36 16 16 C -0.11 -1.49 6.04 -26.57 -0.16 -1.65 16 17 C 0.06 1.08 5.05 -3.85 -0.02 1.06 16 18 N -0.54 -10.56 4.87 -236.26 -1.15 -11.71 16 19 C 0.19 4.66 5.14 -4.98 -0.03 4.63 16 20 C -0.55 -14.67 7.74 -34.44 -0.27 -14.93 16 21 H 0.06 1.50 5.83 -52.49 -0.31 1.19 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 23 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 24 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 C 0.09 1.65 4.16 -3.95 -0.02 1.63 16 29 H 0.08 1.20 6.99 -51.93 -0.36 0.84 16 30 H 0.05 0.56 7.95 -51.93 -0.41 0.15 16 31 H 0.06 0.88 7.72 -51.93 -0.40 0.48 16 32 H 0.11 1.06 7.88 -52.49 -0.41 0.65 16 33 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.11 0.85 8.06 -52.48 -0.42 0.43 16 36 H 0.11 1.15 6.29 -52.48 -0.33 0.82 16 37 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 38 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 39 H 0.08 0.77 7.70 -51.92 -0.40 0.37 16 40 H 0.09 1.20 8.09 -51.93 -0.42 0.78 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.59 8.05 -51.93 -0.42 0.17 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 45 H 0.04 0.70 7.08 -51.93 -0.37 0.33 16 46 H 0.06 1.17 8.03 -51.93 -0.42 0.75 16 47 H 0.03 0.83 8.04 -51.92 -0.42 0.41 16 48 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 50 H 0.07 1.33 8.01 -51.93 -0.42 0.91 16 51 H 0.05 0.95 6.48 -51.93 -0.34 0.61 16 LS Contribution 391.58 15.07 5.90 5.90 Total: -1.00 -30.33 391.58 -11.54 -41.87 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -8.77 Total: 1.19 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -2.69 Total: -9.24 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -1.03 Total: -46.20 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.33 -11.54 -41.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936392.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.958 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds