Wall clock time and date at job start Tue Mar 31 2020 15:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29824 * 118.58284 * 2 1 4 4 C 1.49913 * 122.83734 * 179.97438 * 3 2 1 5 5 C 1.49910 * 111.19341 * 340.48440 * 4 3 2 6 6 C 1.29800 * 122.84221 * 19.51970 * 5 4 3 7 7 C 1.49908 * 122.84647 * 359.97438 * 6 5 4 8 8 H 1.08999 * 109.09012 * 100.88839 * 7 6 5 9 9 C 1.50698 * 109.13597 * 220.04306 * 7 6 5 10 10 O 1.21280 * 120.00248 * 121.69213 * 9 7 6 11 11 N 1.34781 * 120.00053 * 301.68954 * 9 7 6 12 12 C 1.47663 * 134.45507 * 180.02562 * 11 9 7 13 13 C 1.53441 * 85.97557 * 155.70761 * 12 11 9 14 14 C 1.47668 * 134.44800 * 0.02562 * 11 9 7 15 15 C 1.52734 * 113.66743 * 137.75528 * 13 12 11 16 16 C 1.53293 * 108.88475 * 185.25604 * 15 13 12 17 17 C 1.53024 * 109.18366 * 304.60634 * 16 15 13 18 18 N 1.46822 * 109.78485 * 60.98558 * 17 16 15 19 19 C 1.46903 * 110.99758 * 172.41525 * 18 17 16 20 20 C 1.50694 * 109.47066 * 66.04614 * 19 18 17 21 21 H 1.08000 * 120.00563 * 359.97438 * 20 19 18 22 22 C 1.37885 * 119.99902 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99913 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47353 * 269.99586 * 24 22 20 26 26 H 1.48501 * 109.47293 * 30.00037 * 24 22 20 27 27 H 1.48504 * 109.46680 * 149.99835 * 24 22 20 28 28 C 1.47013 * 111.16292 * 296.48372 * 18 17 16 29 29 H 1.08998 * 109.47297 * 270.02532 * 1 2 3 30 30 H 1.09001 * 109.47003 * 30.01901 * 1 2 3 31 31 H 1.08995 * 109.47234 * 150.02436 * 1 2 3 32 32 H 1.08001 * 118.58106 * 359.97438 * 3 2 1 33 33 H 1.09008 * 109.13361 * 100.92151 * 4 3 2 34 34 H 1.09001 * 109.13929 * 220.09484 * 4 3 2 35 35 H 1.08003 * 118.58279 * 199.53866 * 5 4 3 36 36 H 1.08005 * 118.57270 * 180.02562 * 6 5 4 37 37 H 1.08999 * 113.79712 * 41.44078 * 12 11 9 38 38 H 1.09003 * 113.89872 * 269.98566 * 12 11 9 39 39 H 1.09008 * 113.79251 * 90.02998 * 14 11 9 40 40 H 1.08997 * 113.79727 * 318.54884 * 14 11 9 41 41 H 1.09005 * 109.56879 * 65.43647 * 15 13 12 42 42 H 1.09000 * 109.66895 * 305.14156 * 15 13 12 43 43 H 1.09001 * 109.52239 * 184.69561 * 16 15 13 44 44 H 1.08998 * 109.52121 * 64.51501 * 16 15 13 45 45 H 1.08992 * 109.41634 * 300.89157 * 17 16 15 46 46 H 1.09005 * 109.36424 * 181.04650 * 17 16 15 47 47 H 1.09007 * 109.47052 * 306.04299 * 19 18 17 48 48 H 1.09003 * 109.46808 * 186.04992 * 19 18 17 49 49 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 50 50 H 1.08997 * 109.50703 * 179.22767 * 28 18 17 51 51 H 1.09001 * 109.50085 * 299.33960 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1281 1.1400 0.0000 4 6 3.6231 1.2512 0.0006 5 6 4.2611 -0.0222 0.4680 6 6 3.6401 -1.1620 0.4680 7 6 2.2240 -1.3164 0.0010 8 1 2.2244 -1.7229 -1.0104 9 6 1.5031 -2.2716 0.9169 10 8 0.5069 -1.9107 1.5070 11 7 1.9655 -3.5271 1.0803 12 6 1.5290 -4.6951 1.8713 13 6 2.2803 -5.5414 0.8351 14 6 3.1115 -4.2855 0.5400 15 6 3.0915 -6.6818 1.4468 16 6 3.8961 -7.3689 0.3375 17 6 2.9418 -7.8199 -0.7704 18 7 2.2563 -6.6536 -1.3410 19 6 1.4705 -7.0313 -2.5234 20 6 0.3437 -7.9415 -2.1078 21 1 0.2235 -8.2127 -1.0693 22 6 -0.5333 -8.4289 -3.0535 23 7 -0.3867 -8.0991 -4.3182 24 14 -1.9296 -9.5578 -2.5384 25 1 -1.4720 -10.9694 -2.5962 26 1 -2.3462 -9.2288 -1.1515 27 1 -3.0808 -9.3726 -3.4582 28 6 1.4118 -5.9904 -0.3369 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5134 32 1 1.5425 2.0475 -0.0004 33 1 3.9653 1.4721 -1.0106 34 1 3.9208 2.0635 0.6637 35 1 5.2815 0.0101 0.8204 36 1 4.1662 -2.0370 0.8204 37 1 0.4502 -4.8507 1.8673 38 1 1.9614 -4.7380 2.8710 39 1 4.0159 -4.2049 1.1432 40 1 3.2899 -4.1157 -0.5218 41 1 2.4170 -7.4029 1.9086 42 1 3.7726 -6.2850 2.1996 43 1 4.4143 -8.2361 0.7471 44 1 4.6241 -6.6684 -0.0717 45 1 2.2040 -8.5067 -0.3557 46 1 3.5087 -8.3254 -1.5522 47 1 2.1124 -7.5495 -3.2359 48 1 1.0607 -6.1348 -2.9888 49 1 -1.0035 -8.4423 -4.9835 50 1 0.9275 -5.1226 -0.7845 51 1 0.6533 -6.6880 0.0185 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277936392.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:06 Heat of formation + Delta-G solvation = 11.405339 kcal Electronic energy + Delta-G solvation = -29421.774845 eV Core-core repulsion = 25707.530740 eV Total energy + Delta-G solvation = -3714.244104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.06578 -40.56755 -38.68417 -37.84297 -35.14158 -33.90250 -33.47154 -32.52559 -31.00734 -28.89179 -28.33028 -27.24169 -26.90225 -25.83965 -25.04627 -23.28818 -22.04958 -21.40469 -20.45062 -19.51556 -18.36708 -18.11822 -17.60098 -17.02740 -16.81883 -16.51437 -16.31593 -15.94235 -15.66239 -15.53442 -15.33914 -15.00494 -14.76700 -14.41038 -14.33064 -14.17545 -13.86039 -13.78009 -13.52927 -13.34835 -13.20531 -13.04289 -13.01310 -12.93606 -12.86851 -12.71364 -12.26760 -12.18610 -12.12727 -11.91676 -11.81082 -11.49156 -11.29555 -11.20939 -11.04249 -10.72822 -10.63232 -10.33265 -9.67216 -9.43535 -9.02199 -8.18052 -6.38213 1.07599 1.32588 1.33676 1.33894 1.43641 1.67672 1.91428 2.33568 3.06170 3.11290 3.44337 3.55101 3.62287 3.78543 3.86603 4.01052 4.14986 4.17516 4.27187 4.34054 4.35950 4.44015 4.48406 4.52179 4.62047 4.65412 4.68195 4.75591 4.80994 4.82170 4.85335 4.92992 4.95287 5.00690 5.03974 5.08333 5.11472 5.18141 5.19156 5.22066 5.28688 5.32422 5.34909 5.43111 5.56324 5.72199 5.81061 5.86811 6.01070 6.02994 6.24045 6.56766 6.72756 6.83729 7.13781 7.33513 8.83594 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013432 B = 0.003324 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.126328 B = 8420.951237 C = 9288.239892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.131 4.131 3 C -0.152 4.152 4 C -0.068 4.068 5 C -0.133 4.133 6 C -0.172 4.172 7 C -0.030 4.030 8 H 0.104 0.896 9 C 0.538 3.462 10 O -0.579 6.579 11 N -0.642 5.642 12 C 0.114 3.886 13 C -0.081 4.081 14 C 0.127 3.873 15 C -0.096 4.096 16 C -0.104 4.104 17 C 0.059 3.941 18 N -0.531 5.531 19 C 0.202 3.798 20 C -0.556 4.556 21 H 0.056 0.944 22 C 0.011 3.989 23 N -0.925 5.925 24 Si 0.954 3.046 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.282 1.282 28 C 0.099 3.901 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.141 0.859 36 H 0.125 0.875 37 H 0.057 0.943 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.013 0.987 46 H 0.054 0.946 47 H 0.008 0.992 48 H -0.003 1.003 49 H 0.265 0.735 50 H 0.037 0.963 51 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.750 13.629 13.101 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.132 4.132 3 C -0.169 4.169 4 C -0.104 4.104 5 C -0.151 4.151 6 C -0.190 4.190 7 C -0.050 4.050 8 H 0.121 0.879 9 C 0.329 3.671 10 O -0.459 6.459 11 N -0.376 5.376 12 C -0.009 4.009 13 C -0.082 4.082 14 C 0.005 3.995 15 C -0.134 4.134 16 C -0.142 4.142 17 C -0.070 4.070 18 N -0.254 5.254 19 C 0.075 3.925 20 C -0.595 4.595 21 H 0.074 0.926 22 C -0.188 4.188 23 N -0.565 5.565 24 Si 0.779 3.221 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.208 1.208 28 C -0.029 4.029 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.144 0.856 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.159 0.841 36 H 0.143 0.857 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.122 0.878 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.032 0.968 46 H 0.072 0.928 47 H 0.026 0.974 48 H 0.015 0.985 49 H 0.074 0.926 50 H 0.055 0.945 51 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 13.441 14.329 13.045 23.583 hybrid contribution -2.304 -1.546 -0.347 2.796 sum 11.138 12.783 12.698 21.182 Atomic orbital electron populations 1.20751 0.92347 1.00687 1.01670 1.20659 0.96001 0.93637 1.02858 1.22257 0.97166 0.96940 1.00581 1.19430 0.90922 0.96900 1.03118 1.22515 1.00777 0.93725 0.98063 1.21934 0.93142 1.00014 1.03936 1.18759 0.94336 0.93019 0.98905 0.87853 1.20511 0.83922 0.80733 0.81973 1.90647 1.27883 1.76439 1.50926 1.50123 1.30435 1.10084 1.46958 1.23329 1.00117 0.80800 0.96642 1.22017 0.96352 0.95411 0.94456 1.23406 0.89995 0.85263 1.00820 1.21485 0.98383 0.95768 0.97730 1.21582 0.97137 1.01185 0.94246 1.21974 0.96152 0.91596 0.97258 1.62395 1.29636 1.26691 1.06681 1.19360 0.90874 0.93464 0.88813 1.21995 1.13622 1.29936 0.93981 0.92596 1.25807 1.00247 0.97870 0.94881 1.70061 1.38800 1.45852 1.01800 0.85620 0.78896 0.79425 0.78173 1.19506 1.19508 1.20772 1.21389 0.93529 0.96542 0.91476 0.92014 0.91256 0.94737 0.85599 0.87887 0.87871 0.84130 0.85691 0.92394 0.86548 0.86042 0.90128 0.91999 0.87815 0.89645 0.90302 0.96839 0.92766 0.97420 0.98533 0.92628 0.94474 0.96444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.77 8.17 71.24 0.58 -2.19 16 2 C -0.13 -3.39 5.38 -15.52 -0.08 -3.48 16 3 C -0.15 -3.01 9.49 26.61 0.25 -2.76 16 4 C -0.07 -0.97 6.27 28.61 0.18 -0.79 16 5 C -0.13 -2.08 9.92 26.64 0.26 -1.81 16 6 C -0.17 -3.43 8.79 26.64 0.23 -3.19 16 7 C -0.03 -0.78 2.74 -13.53 -0.04 -0.82 16 8 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 9 C 0.54 16.96 7.10 87.66 0.62 17.58 16 10 O -0.58 -22.18 14.01 -3.03 -0.04 -22.23 16 11 N -0.64 -17.53 3.39 -843.30 -2.86 -20.39 16 12 C 0.11 2.88 7.97 86.30 0.69 3.56 16 13 C -0.08 -2.09 0.86 -52.05 -0.04 -2.14 16 14 C 0.13 2.78 6.05 86.31 0.52 3.30 16 15 C -0.10 -1.93 5.18 30.60 0.16 -1.77 16 16 C -0.10 -2.37 6.04 30.70 0.19 -2.19 16 17 C 0.06 2.05 5.05 86.33 0.44 2.49 16 18 N -0.53 -21.65 4.87 -901.39 -4.39 -26.04 16 19 C 0.20 10.61 5.14 85.55 0.44 11.05 16 20 C -0.56 -31.01 7.74 25.60 0.20 -30.81 16 21 H 0.06 3.07 5.83 -2.91 -0.02 3.05 16 22 C 0.01 0.65 5.46 84.66 0.46 1.11 16 23 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 24 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 27 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 28 C 0.10 3.77 4.16 86.16 0.36 4.13 16 29 H 0.06 1.95 6.99 -2.39 -0.02 1.93 16 30 H 0.07 1.59 7.95 -2.39 -0.02 1.57 16 31 H 0.03 1.10 7.72 -2.39 -0.02 1.08 16 32 H 0.13 2.11 7.88 -2.91 -0.02 2.08 16 33 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 36 H 0.13 2.14 6.29 -2.91 -0.02 2.12 16 37 H 0.06 1.73 8.09 -2.39 -0.02 1.72 16 38 H 0.12 2.20 8.09 -2.39 -0.02 2.18 16 39 H 0.12 1.74 7.70 -2.38 -0.02 1.72 16 40 H 0.08 2.01 8.09 -2.39 -0.02 1.99 16 41 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.10 1.35 8.05 -2.39 -0.02 1.33 16 43 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.08 1.64 8.11 -2.39 -0.02 1.62 16 45 H 0.01 0.53 7.08 -2.39 -0.02 0.51 16 46 H 0.05 1.99 8.03 -2.38 -0.02 1.97 16 47 H 0.01 0.43 8.04 -2.38 -0.02 0.41 16 48 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 49 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 50 H 0.04 1.59 8.01 -2.39 -0.02 1.58 16 51 H 0.02 0.75 6.48 -2.39 -0.02 0.74 16 Total: -1.00 -71.86 391.58 1.33 -70.53 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.89 Total: 15.72 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 5.42 Total: -8.71 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -6.96 Total: -101.85 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.04 Total: -22.23 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -71.86 1.33 -70.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936392.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.932 kcal (2) G-P(sol) polarization free energy of solvation -71.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds