Wall clock time and date at job start Tue Mar 31 2020 15:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.29825 * 118.58391 * 2 1 4 4 C 1.49904 * 122.84370 * 180.02562 * 3 2 1 5 5 C 1.49916 * 111.18896 * 340.43738 * 4 3 2 6 6 C 1.29825 * 122.83630 * 19.51791 * 5 4 3 7 7 C 1.49912 * 122.83873 * 0.04733 * 6 5 4 8 8 H 1.08994 * 109.09088 * 100.84179 * 7 6 5 9 9 C 1.50697 * 109.13321 * 219.99380 * 7 6 5 10 10 O 1.21281 * 120.00024 * 121.69343 * 9 7 6 11 11 N 1.34779 * 119.99846 * 301.68927 * 9 7 6 12 12 C 1.47681 * 134.44522 * 180.02562 * 11 9 7 13 13 C 1.53443 * 85.95260 * 204.28988 * 12 11 9 14 14 C 1.47673 * 134.44959 * 0.03399 * 11 9 7 15 15 C 1.52713 * 113.67054 * 91.19707 * 13 12 11 16 16 C 1.53227 * 109.01015 * 77.66292 * 15 13 12 17 17 N 1.46838 * 109.43936 * 56.78098 * 16 15 13 18 18 C 1.46909 * 111.00120 * 172.18188 * 17 16 15 19 19 C 1.50699 * 109.47259 * 64.93498 * 18 17 16 20 20 H 1.07996 * 120.00059 * 354.98207 * 19 18 17 21 21 C 1.37876 * 119.99594 * 174.97779 * 19 18 17 22 22 N 1.31513 * 119.99543 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00324 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47322 * 269.99940 * 23 21 19 25 25 H 1.48507 * 109.47097 * 30.00010 * 23 21 19 26 26 H 1.48504 * 109.47230 * 149.99791 * 23 21 19 27 27 C 1.46844 * 111.44690 * 296.45769 * 17 16 15 28 28 C 1.52709 * 113.67837 * 222.12140 * 13 12 11 29 29 H 1.09000 * 109.47353 * 270.01782 * 1 2 3 30 30 H 1.08994 * 109.47711 * 30.01691 * 1 2 3 31 31 H 1.09005 * 109.46978 * 150.02040 * 1 2 3 32 32 H 1.08009 * 118.57482 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.13988 * 100.88074 * 4 3 2 34 34 H 1.09000 * 109.13691 * 220.05695 * 4 3 2 35 35 H 1.08002 * 118.58081 * 199.54363 * 5 4 3 36 36 H 1.08002 * 118.57746 * 180.02562 * 6 5 4 37 37 H 1.09002 * 113.79475 * 90.03439 * 12 11 9 38 38 H 1.08996 * 113.90112 * 318.56386 * 12 11 9 39 39 H 1.08998 * 113.79717 * 41.44386 * 14 11 9 40 40 H 1.09002 * 113.79334 * 269.96514 * 14 11 9 41 41 H 1.08990 * 109.54973 * 317.79814 * 15 13 12 42 42 H 1.09006 * 109.62311 * 197.56586 * 15 13 12 43 43 H 1.09006 * 109.47704 * 296.78888 * 16 15 13 44 44 H 1.08997 * 109.47825 * 176.76885 * 16 15 13 45 45 H 1.09001 * 109.46376 * 304.93435 * 18 17 16 46 46 H 1.08997 * 109.46567 * 184.94332 * 18 17 16 47 47 H 0.97003 * 119.99401 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.47405 * 183.54062 * 27 17 16 49 49 H 1.09000 * 109.47408 * 303.55704 * 27 17 16 50 50 H 1.09000 * 109.54332 * 42.19818 * 28 13 12 51 51 H 1.08997 * 109.55078 * 162.48644 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1281 1.1400 0.0000 4 6 3.6230 1.2514 -0.0006 5 6 4.2613 -0.0220 0.4669 6 6 3.6401 -1.1619 0.4678 7 6 2.2241 -1.3164 0.0003 8 1 2.2249 -1.7231 -1.0109 9 6 1.5031 -2.2716 0.9161 10 8 0.5067 -1.9107 1.5058 11 7 1.9655 -3.5269 1.0798 12 6 1.5287 -4.6949 1.8710 13 6 2.9913 -5.1534 1.7995 14 6 3.1119 -4.2853 0.5400 15 6 3.8450 -4.6639 2.9672 16 6 3.5478 -5.5259 4.1986 17 7 3.7965 -6.9373 3.8787 18 6 3.7020 -7.7745 5.0822 19 6 2.2890 -7.7447 5.6053 20 1 1.5560 -7.0996 5.1439 21 6 1.9322 -8.5410 6.6727 22 7 0.6990 -8.5154 7.1289 23 14 3.2004 -9.6564 7.4710 24 1 3.1882 -10.9804 6.7989 25 1 4.5482 -9.0469 7.3396 26 1 2.8729 -9.8283 8.9093 27 6 2.8877 -7.4184 2.8304 28 6 3.1530 -6.6483 1.5326 29 1 -0.3634 0.0003 1.0276 30 1 -0.3634 0.8897 -0.5140 31 1 -0.3633 -0.8902 -0.5135 32 1 1.5423 2.0475 0.0004 33 1 3.9645 1.4720 -1.0119 34 1 3.9210 2.0638 0.6622 35 1 5.2820 0.0105 0.8186 36 1 4.1663 -2.0368 0.8201 37 1 0.8362 -5.3500 1.3424 38 1 1.1945 -4.4461 2.8782 39 1 4.0358 -3.7092 0.4897 40 1 2.8903 -4.8186 -0.3845 41 1 3.6044 -3.6232 3.1838 42 1 4.9008 -4.7480 2.7093 43 1 2.5051 -5.3973 4.4892 44 1 4.1947 -5.2203 5.0209 45 1 4.3801 -7.3917 5.8450 46 1 3.9761 -8.7998 4.8339 47 1 0.4481 -9.0754 7.8801 48 1 3.0569 -8.4821 2.6629 49 1 1.8557 -7.2592 3.1430 50 1 2.4400 -6.9618 0.7701 51 1 4.1679 -6.8499 1.1898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277936659.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:14 Heat of formation + Delta-G solvation = 35.402245 kcal Electronic energy + Delta-G solvation = -29168.784813 eV Core-core repulsion = 25455.581293 eV Total energy + Delta-G solvation = -3713.203520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.09444 -39.59348 -37.66077 -36.68096 -33.26517 -32.86206 -31.91456 -31.11351 -30.50009 -28.38027 -27.18139 -26.30162 -25.81333 -24.32884 -22.78422 -22.52945 -20.72452 -20.46292 -19.42060 -18.11750 -17.21428 -16.76425 -16.59500 -16.25153 -15.72933 -15.41126 -15.03030 -14.73394 -14.43958 -14.38128 -14.12190 -13.75119 -13.67887 -13.50373 -13.28698 -12.96383 -12.66851 -12.55604 -12.39807 -12.25946 -12.12922 -12.02363 -11.88887 -11.73785 -11.39265 -11.19524 -11.06951 -10.74164 -10.61736 -10.39637 -10.29625 -10.19340 -10.01914 -9.87102 -9.70089 -9.59233 -9.45630 -8.70237 -8.64250 -8.61309 -7.22489 -6.12263 -4.12457 1.79353 2.07156 2.64876 2.86118 3.25814 3.34035 3.37436 4.21971 4.28830 4.34359 4.37758 4.56852 4.76283 4.84598 4.90582 4.94465 5.00596 5.08155 5.18659 5.21339 5.25147 5.34592 5.38136 5.40229 5.46663 5.59719 5.64843 5.72524 5.78281 5.81309 5.83623 5.90731 5.92007 5.93154 6.02833 6.08102 6.20307 6.22292 6.32353 6.43353 6.50226 6.54457 6.56505 6.71098 6.75958 6.80913 6.94515 7.04995 7.54048 7.71724 8.02673 8.09856 8.16832 8.42440 8.90154 9.50619 11.00671 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021420 B = 0.002671 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.864502 B =10479.108790 C =10776.185385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.097 4.097 3 C -0.166 4.166 4 C -0.062 4.062 5 C -0.142 4.142 6 C -0.157 4.157 7 C -0.032 4.032 8 H 0.111 0.889 9 C 0.543 3.457 10 O -0.533 6.533 11 N -0.639 5.639 12 C 0.116 3.884 13 C -0.084 4.084 14 C 0.102 3.898 15 C -0.089 4.089 16 C 0.064 3.936 17 N -0.535 5.535 18 C 0.155 3.845 19 C -0.552 4.552 20 H 0.074 0.926 21 C 0.072 3.928 22 N -0.898 5.898 23 Si 0.879 3.121 24 H -0.276 1.276 25 H -0.264 1.264 26 H -0.288 1.288 27 C 0.064 3.936 28 C -0.100 4.100 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.042 0.958 44 H 0.066 0.934 45 H 0.026 0.974 46 H 0.025 0.975 47 H 0.263 0.737 48 H 0.067 0.933 49 H 0.045 0.955 50 H 0.063 0.937 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.425 14.803 -18.497 24.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.098 4.098 3 C -0.184 4.184 4 C -0.099 4.099 5 C -0.160 4.160 6 C -0.175 4.175 7 C -0.053 4.053 8 H 0.128 0.872 9 C 0.332 3.668 10 O -0.409 6.409 11 N -0.374 5.374 12 C -0.006 4.006 13 C -0.085 4.085 14 C -0.020 4.020 15 C -0.127 4.127 16 C -0.065 4.065 17 N -0.258 5.258 18 C 0.029 3.971 19 C -0.590 4.590 20 H 0.092 0.908 21 C -0.131 4.131 22 N -0.536 5.536 23 Si 0.706 3.294 24 H -0.202 1.202 25 H -0.189 1.189 26 H -0.214 1.214 27 C -0.065 4.065 28 C -0.139 4.139 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.073 0.927 48 H 0.085 0.915 49 H 0.063 0.937 50 H 0.082 0.918 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.155 15.100 -18.236 24.734 hybrid contribution -0.352 -0.711 0.884 1.187 sum 6.803 14.390 -17.352 23.547 Atomic orbital electron populations 1.20876 0.91167 1.00826 1.03334 1.20595 0.96428 0.92736 0.99997 1.21928 0.95609 0.97388 1.03516 1.19254 0.92620 0.96459 1.01535 1.22219 0.99966 0.94171 0.99667 1.22044 0.94258 0.99037 1.02209 1.18828 0.93160 0.93727 0.99551 0.87197 1.19996 0.83831 0.80856 0.82067 1.90707 1.25930 1.75964 1.48304 1.50057 1.30081 1.09902 1.47403 1.23285 0.96534 0.83860 0.96900 1.22094 0.95350 0.95896 0.95117 1.23481 0.89375 0.91521 0.97668 1.21358 0.98946 0.98402 0.93945 1.21864 1.00373 0.88895 0.95333 1.62281 1.50968 1.02079 1.10511 1.20159 0.96558 0.92703 0.87726 1.21692 0.95618 1.25616 1.16116 0.90763 1.24982 0.95052 0.96579 0.96479 1.69932 1.17654 1.40027 1.26029 0.86795 0.82513 0.81396 0.78678 1.20210 1.18876 1.21358 1.21866 0.96162 0.98158 0.90287 1.21560 1.01958 0.92143 0.98208 0.89793 0.93068 0.92466 0.86878 0.89643 0.90115 0.86716 0.86274 0.89762 0.89731 0.89905 0.89605 0.92128 0.91137 0.93959 0.91561 0.95552 0.95672 0.92676 0.91499 0.93689 0.91840 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 8.17 36.00 0.29 -0.93 16 2 C -0.10 -1.10 5.38 -101.12 -0.54 -1.64 16 3 C -0.17 -1.60 9.49 -36.08 -0.34 -1.95 16 4 C -0.06 -0.49 6.27 -29.80 -0.19 -0.68 16 5 C -0.14 -1.24 9.93 -36.07 -0.36 -1.60 16 6 C -0.16 -1.55 8.76 -36.08 -0.32 -1.87 16 7 C -0.03 -0.36 2.75 -94.84 -0.26 -0.62 16 8 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 9 C 0.54 7.66 7.10 -10.99 -0.08 7.58 16 10 O -0.53 -9.42 14.00 5.56 0.08 -9.34 16 11 N -0.64 -8.15 3.40 -180.59 -0.61 -8.76 16 12 C 0.12 1.63 7.73 -3.17 -0.02 1.60 16 13 C -0.08 -1.04 0.79 -154.45 -0.12 -1.16 16 14 C 0.10 1.00 7.25 -3.18 -0.02 0.97 16 15 C -0.09 -1.23 5.23 -26.76 -0.14 -1.37 16 16 C 0.06 1.16 5.04 -3.74 -0.02 1.14 16 17 N -0.53 -10.38 4.81 -235.87 -1.13 -11.51 16 18 C 0.16 3.60 4.17 -4.97 -0.02 3.58 16 19 C -0.55 -14.98 8.32 -34.44 -0.29 -15.26 16 20 H 0.07 2.20 6.15 -52.49 -0.32 1.87 16 21 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 22 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 23 Si 0.88 21.15 27.37 -169.99 -4.65 16.50 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H -0.26 -6.11 6.69 56.52 0.38 -5.73 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.06 1.12 4.95 -3.74 -0.02 1.10 16 28 C -0.10 -1.28 5.29 -26.76 -0.14 -1.42 16 29 H 0.08 1.15 6.99 -51.93 -0.36 0.79 16 30 H 0.05 0.48 7.95 -51.93 -0.41 0.07 16 31 H 0.06 0.69 7.72 -51.93 -0.40 0.28 16 32 H 0.11 0.95 7.88 -52.48 -0.41 0.54 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.11 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.12 1.11 5.40 -52.49 -0.28 0.82 16 37 H 0.08 1.11 8.02 -51.93 -0.42 0.70 16 38 H 0.08 1.41 7.66 -51.93 -0.40 1.01 16 39 H 0.08 0.69 5.79 -51.93 -0.30 0.39 16 40 H 0.09 0.69 8.09 -51.93 -0.42 0.27 16 41 H 0.06 0.85 8.01 -51.93 -0.42 0.43 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.04 0.88 6.47 -51.93 -0.34 0.55 16 44 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 45 H 0.03 0.63 7.46 -51.93 -0.39 0.24 16 46 H 0.03 0.59 7.29 -51.93 -0.38 0.21 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 49 H 0.04 0.91 6.77 -51.93 -0.35 0.56 16 50 H 0.06 0.70 8.04 -51.93 -0.42 0.29 16 51 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 385.43 15.07 5.81 5.81 Total: -1.00 -31.81 385.43 -10.98 -42.79 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -8.55 Total: 1.50 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -2.68 Total: -10.58 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.97 Total: -46.68 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.08 Total: -9.34 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.65 Total: 16.50 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.81 -10.98 -42.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936659.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.193 kcal (2) G-P(sol) polarization free energy of solvation -31.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds