Wall clock time and date at job start Tue Mar 31 2020 15:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.29825 * 118.58391 * 2 1 4 4 C 1.49904 * 122.84370 * 180.02562 * 3 2 1 5 5 C 1.49916 * 111.18896 * 340.43738 * 4 3 2 6 6 C 1.29825 * 122.83630 * 19.51791 * 5 4 3 7 7 C 1.49912 * 122.83873 * 0.04733 * 6 5 4 8 8 H 1.08994 * 109.09088 * 100.84179 * 7 6 5 9 9 C 1.50697 * 109.13321 * 219.99380 * 7 6 5 10 10 O 1.21281 * 120.00024 * 121.69343 * 9 7 6 11 11 N 1.34779 * 119.99846 * 301.68927 * 9 7 6 12 12 C 1.47681 * 134.44522 * 180.02562 * 11 9 7 13 13 C 1.53443 * 85.95260 * 204.28988 * 12 11 9 14 14 C 1.47673 * 134.44959 * 0.03399 * 11 9 7 15 15 C 1.52713 * 113.67054 * 91.19707 * 13 12 11 16 16 C 1.53227 * 109.01015 * 77.66292 * 15 13 12 17 17 N 1.46838 * 109.43936 * 56.78098 * 16 15 13 18 18 C 1.46909 * 111.00120 * 172.18188 * 17 16 15 19 19 C 1.50699 * 109.47259 * 64.93498 * 18 17 16 20 20 H 1.07996 * 120.00059 * 354.98207 * 19 18 17 21 21 C 1.37876 * 119.99594 * 174.97779 * 19 18 17 22 22 N 1.31513 * 119.99543 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00324 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47322 * 269.99940 * 23 21 19 25 25 H 1.48507 * 109.47097 * 30.00010 * 23 21 19 26 26 H 1.48504 * 109.47230 * 149.99791 * 23 21 19 27 27 C 1.46844 * 111.44690 * 296.45769 * 17 16 15 28 28 C 1.52709 * 113.67837 * 222.12140 * 13 12 11 29 29 H 1.09000 * 109.47353 * 270.01782 * 1 2 3 30 30 H 1.08994 * 109.47711 * 30.01691 * 1 2 3 31 31 H 1.09005 * 109.46978 * 150.02040 * 1 2 3 32 32 H 1.08009 * 118.57482 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.13988 * 100.88074 * 4 3 2 34 34 H 1.09000 * 109.13691 * 220.05695 * 4 3 2 35 35 H 1.08002 * 118.58081 * 199.54363 * 5 4 3 36 36 H 1.08002 * 118.57746 * 180.02562 * 6 5 4 37 37 H 1.09002 * 113.79475 * 90.03439 * 12 11 9 38 38 H 1.08996 * 113.90112 * 318.56386 * 12 11 9 39 39 H 1.08998 * 113.79717 * 41.44386 * 14 11 9 40 40 H 1.09002 * 113.79334 * 269.96514 * 14 11 9 41 41 H 1.08990 * 109.54973 * 317.79814 * 15 13 12 42 42 H 1.09006 * 109.62311 * 197.56586 * 15 13 12 43 43 H 1.09006 * 109.47704 * 296.78888 * 16 15 13 44 44 H 1.08997 * 109.47825 * 176.76885 * 16 15 13 45 45 H 1.09001 * 109.46376 * 304.93435 * 18 17 16 46 46 H 1.08997 * 109.46567 * 184.94332 * 18 17 16 47 47 H 0.97003 * 119.99401 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.47405 * 183.54062 * 27 17 16 49 49 H 1.09000 * 109.47408 * 303.55704 * 27 17 16 50 50 H 1.09000 * 109.54332 * 42.19818 * 28 13 12 51 51 H 1.08997 * 109.55078 * 162.48644 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1281 1.1400 0.0000 4 6 3.6230 1.2514 -0.0006 5 6 4.2613 -0.0220 0.4669 6 6 3.6401 -1.1619 0.4678 7 6 2.2241 -1.3164 0.0003 8 1 2.2249 -1.7231 -1.0109 9 6 1.5031 -2.2716 0.9161 10 8 0.5067 -1.9107 1.5058 11 7 1.9655 -3.5269 1.0798 12 6 1.5287 -4.6949 1.8710 13 6 2.9913 -5.1534 1.7995 14 6 3.1119 -4.2853 0.5400 15 6 3.8450 -4.6639 2.9672 16 6 3.5478 -5.5259 4.1986 17 7 3.7965 -6.9373 3.8787 18 6 3.7020 -7.7745 5.0822 19 6 2.2890 -7.7447 5.6053 20 1 1.5560 -7.0996 5.1439 21 6 1.9322 -8.5410 6.6727 22 7 0.6990 -8.5154 7.1289 23 14 3.2004 -9.6564 7.4710 24 1 3.1882 -10.9804 6.7989 25 1 4.5482 -9.0469 7.3396 26 1 2.8729 -9.8283 8.9093 27 6 2.8877 -7.4184 2.8304 28 6 3.1530 -6.6483 1.5326 29 1 -0.3634 0.0003 1.0276 30 1 -0.3634 0.8897 -0.5140 31 1 -0.3633 -0.8902 -0.5135 32 1 1.5423 2.0475 0.0004 33 1 3.9645 1.4720 -1.0119 34 1 3.9210 2.0638 0.6622 35 1 5.2820 0.0105 0.8186 36 1 4.1663 -2.0368 0.8201 37 1 0.8362 -5.3500 1.3424 38 1 1.1945 -4.4461 2.8782 39 1 4.0358 -3.7092 0.4897 40 1 2.8903 -4.8186 -0.3845 41 1 3.6044 -3.6232 3.1838 42 1 4.9008 -4.7480 2.7093 43 1 2.5051 -5.3973 4.4892 44 1 4.1947 -5.2203 5.0209 45 1 4.3801 -7.3917 5.8450 46 1 3.9761 -8.7998 4.8339 47 1 0.4481 -9.0754 7.8801 48 1 3.0569 -8.4821 2.6629 49 1 1.8557 -7.2592 3.1430 50 1 2.4400 -6.9618 0.7701 51 1 4.1679 -6.8499 1.1898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277936659.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:13 Heat of formation + Delta-G solvation = 15.401288 kcal Electronic energy + Delta-G solvation = -29169.652120 eV Core-core repulsion = 25455.581293 eV Total energy + Delta-G solvation = -3714.070827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.13800 -40.58405 -38.74086 -38.02436 -34.91131 -33.91322 -33.26073 -32.12202 -31.81891 -29.77106 -28.29683 -27.35993 -27.11173 -25.15118 -24.20552 -24.07599 -22.02051 -21.46423 -20.50710 -19.51787 -18.66412 -18.00320 -17.64568 -17.15243 -16.82857 -16.55800 -16.23862 -15.93443 -15.91369 -15.68379 -15.23982 -14.95085 -14.74834 -14.56300 -14.39047 -14.25392 -13.98211 -13.75642 -13.56934 -13.49865 -13.28648 -13.10248 -12.96570 -12.91977 -12.83456 -12.73909 -12.18464 -12.14776 -12.02434 -11.96137 -11.77043 -11.44024 -11.39138 -11.26013 -11.15497 -10.79987 -10.69695 -10.33452 -9.71261 -9.46070 -8.96508 -8.32736 -6.38270 1.06398 1.33182 1.34713 1.36524 1.48691 1.63190 1.88905 2.32999 3.02858 3.19903 3.36609 3.45083 3.55506 3.72892 3.81221 3.97915 4.10614 4.13645 4.23821 4.31025 4.36557 4.38943 4.47569 4.50713 4.61727 4.63754 4.65769 4.70575 4.76876 4.78868 4.81302 4.85522 4.92379 4.95097 4.98031 5.02244 5.05001 5.09761 5.11540 5.21021 5.23480 5.25923 5.33989 5.36959 5.40121 5.56454 5.82414 5.86319 6.00558 6.10302 6.35366 6.48151 6.69910 6.71989 7.11361 7.29302 8.83949 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021420 B = 0.002671 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.864502 B =10479.108790 C =10776.185385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.131 4.131 3 C -0.153 4.153 4 C -0.067 4.067 5 C -0.135 4.135 6 C -0.177 4.177 7 C -0.022 4.022 8 H 0.127 0.873 9 C 0.534 3.466 10 O -0.583 6.583 11 N -0.639 5.639 12 C 0.105 3.895 13 C -0.081 4.081 14 C 0.121 3.879 15 C -0.076 4.076 16 C 0.065 3.935 17 N -0.523 5.523 18 C 0.160 3.840 19 C -0.549 4.549 20 H 0.029 0.971 21 C 0.007 3.993 22 N -0.951 5.951 23 Si 0.953 3.047 24 H -0.264 1.264 25 H -0.244 1.244 26 H -0.288 1.288 27 C 0.061 3.939 28 C -0.086 4.086 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.089 0.911 38 H 0.040 0.960 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.057 0.943 42 H 0.098 0.902 43 H -0.003 1.003 44 H 0.060 0.940 45 H 0.027 0.973 46 H 0.034 0.966 47 H 0.265 0.735 48 H 0.066 0.934 49 H 0.003 0.997 50 H 0.087 0.913 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.633 15.314 -21.200 28.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.131 4.131 3 C -0.171 4.171 4 C -0.103 4.103 5 C -0.152 4.152 6 C -0.195 4.195 7 C -0.042 4.042 8 H 0.144 0.856 9 C 0.325 3.675 10 O -0.463 6.463 11 N -0.373 5.373 12 C -0.018 4.018 13 C -0.082 4.082 14 C 0.000 4.000 15 C -0.113 4.113 16 C -0.064 4.064 17 N -0.246 5.246 18 C 0.032 3.968 19 C -0.588 4.588 20 H 0.048 0.952 21 C -0.191 4.191 22 N -0.592 5.592 23 Si 0.776 3.224 24 H -0.189 1.189 25 H -0.167 1.167 26 H -0.214 1.214 27 C -0.067 4.067 28 C -0.124 4.124 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.141 0.859 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.154 0.846 36 H 0.144 0.856 37 H 0.107 0.893 38 H 0.059 0.941 39 H 0.128 0.872 40 H 0.135 0.865 41 H 0.076 0.924 42 H 0.117 0.883 43 H 0.016 0.984 44 H 0.079 0.921 45 H 0.045 0.955 46 H 0.052 0.948 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.022 0.978 50 H 0.106 0.894 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.405 15.611 -20.982 28.531 hybrid contribution -1.770 -0.762 1.750 2.603 sum 9.634 14.849 -19.232 26.138 Atomic orbital electron populations 1.20752 0.92274 1.01102 1.01388 1.20674 0.96011 0.93715 1.02720 1.22251 0.97080 0.97092 1.00709 1.19419 0.91006 0.96707 1.03208 1.22516 1.00819 0.93858 0.98045 1.22060 0.93492 1.00041 1.03933 1.18787 0.93531 0.92586 0.99323 0.85620 1.20762 0.83435 0.81402 0.81904 1.90689 1.28256 1.76953 1.50416 1.50163 1.30742 1.09405 1.47000 1.23265 0.98232 0.85193 0.95137 1.22033 0.93364 0.96448 0.96349 1.23631 0.89276 0.90244 0.96862 1.21244 1.00764 0.97049 0.92264 1.21875 0.97538 0.89183 0.97768 1.62357 1.50954 1.02074 1.09167 1.20044 0.93512 0.93945 0.89286 1.21939 0.96990 1.24143 1.15686 0.95246 1.25999 0.97267 0.98562 0.97272 1.70105 1.20273 1.41713 1.27094 0.85629 0.80166 0.79368 0.77280 1.18877 1.16714 1.21362 1.21956 0.93515 0.99149 0.92127 1.21502 1.04195 0.91094 0.95627 0.92944 0.91183 0.93721 0.85895 0.87363 0.88539 0.84642 0.85563 0.89262 0.94126 0.87154 0.86464 0.92395 0.88310 0.98437 0.92111 0.95535 0.94828 0.92611 0.91581 0.97817 0.89424 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.38 8.17 71.23 0.58 -1.80 16 2 C -0.13 -2.86 5.38 -15.52 -0.08 -2.94 16 3 C -0.15 -2.63 9.49 26.61 0.25 -2.38 16 4 C -0.07 -0.81 6.27 28.61 0.18 -0.64 16 5 C -0.13 -1.84 9.93 26.61 0.26 -1.57 16 6 C -0.18 -2.97 8.76 26.61 0.23 -2.73 16 7 C -0.02 -0.45 2.75 -13.52 -0.04 -0.49 16 8 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 9 C 0.53 15.24 7.10 87.66 0.62 15.86 16 10 O -0.58 -22.09 14.00 -3.03 -0.04 -22.13 16 11 N -0.64 -15.93 3.40 -843.66 -2.87 -18.80 16 12 C 0.10 3.07 7.73 86.30 0.67 3.74 16 13 C -0.08 -1.88 0.79 -52.04 -0.04 -1.92 16 14 C 0.12 1.91 7.25 86.30 0.63 2.54 16 15 C -0.08 -2.00 5.23 30.57 0.16 -1.84 16 16 C 0.06 2.43 5.04 86.39 0.44 2.86 16 17 N -0.52 -20.25 4.81 -900.16 -4.33 -24.58 16 18 C 0.16 7.45 4.17 85.55 0.36 7.81 16 19 C -0.55 -31.29 8.32 25.60 0.21 -31.08 16 20 H 0.03 1.90 6.15 -2.91 -0.02 1.88 16 21 C 0.01 0.38 5.47 84.65 0.46 0.84 16 22 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 23 Si 0.95 43.96 27.37 68.60 1.88 45.84 16 24 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.24 -10.37 6.69 99.48 0.67 -9.70 16 26 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 27 C 0.06 2.15 4.95 86.39 0.43 2.58 16 28 C -0.09 -1.97 5.29 30.57 0.16 -1.81 16 29 H 0.05 1.57 6.99 -2.39 -0.02 1.55 16 30 H 0.07 1.32 7.95 -2.39 -0.02 1.30 16 31 H 0.04 1.14 7.72 -2.38 -0.02 1.12 16 32 H 0.12 1.81 7.88 -2.91 -0.02 1.78 16 33 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.13 1.86 5.40 -2.91 -0.02 1.84 16 37 H 0.09 2.48 8.02 -2.39 -0.02 2.46 16 38 H 0.04 1.53 7.66 -2.39 -0.02 1.51 16 39 H 0.11 1.24 5.79 -2.39 -0.01 1.23 16 40 H 0.12 1.26 8.09 -2.39 -0.02 1.24 16 41 H 0.06 1.58 8.01 -2.39 -0.02 1.57 16 42 H 0.10 2.13 8.14 -2.38 -0.02 2.12 16 43 H 0.00 -0.13 6.47 -2.38 -0.02 -0.14 16 44 H 0.06 2.29 8.04 -2.39 -0.02 2.27 16 45 H 0.03 1.24 7.46 -2.39 -0.02 1.22 16 46 H 0.03 1.52 7.29 -2.39 -0.02 1.50 16 47 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 48 H 0.07 2.31 8.10 -2.39 -0.02 2.29 16 49 H 0.00 0.15 6.77 -2.39 -0.02 0.13 16 50 H 0.09 1.65 8.04 -2.39 -0.02 1.63 16 51 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -76.67 385.43 1.28 -75.38 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.86 Total: 17.34 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 5.48 Total: -12.96 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -6.90 Total: -103.47 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.04 Total: -22.13 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.84 kcal Total: -76.67 1.28 -75.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936659.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.784 kcal (2) G-P(sol) polarization free energy of solvation -76.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds