Wall clock time and date at job start Tue Mar 31 2020 15:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29827 * 118.57655 * 2 1 4 4 C 1.49913 * 122.83071 * 179.97438 * 3 2 1 5 5 C 1.49907 * 111.19464 * 340.48371 * 4 3 2 6 6 C 1.29726 * 122.82465 * 19.46508 * 5 4 3 7 7 C 1.49908 * 118.57858 * 179.97438 * 2 1 3 8 8 H 1.09003 * 109.13691 * 79.16225 * 7 2 1 9 9 C 1.50701 * 109.13848 * 319.97953 * 7 2 1 10 10 O 1.21284 * 119.99589 * 359.19094 * 9 7 2 11 11 N 1.34774 * 120.00070 * 179.17938 * 9 7 2 12 12 C 1.46499 * 119.99967 * 179.97438 * 11 9 7 13 13 C 1.53140 * 109.42574 * 119.85918 * 12 11 9 14 14 C 1.53708 * 108.88791 * 66.06838 * 13 12 11 15 15 H 1.09001 * 112.61519 * 188.04312 * 14 13 12 16 16 C 1.54613 * 107.80707 * 312.37698 * 14 13 12 17 17 C 1.54288 * 104.84042 * 88.55963 * 16 14 13 18 18 C 1.54606 * 104.84352 * 359.97438 * 17 16 14 19 19 H 1.08995 * 112.21767 * 147.47718 * 18 17 16 20 20 C 1.53138 * 109.43370 * 240.12353 * 12 11 9 21 21 N 1.48715 * 107.24196 * 64.08539 * 14 13 12 22 22 C 1.46900 * 111.00156 * 168.34230 * 21 14 13 23 23 C 1.50698 * 109.47362 * 284.47200 * 22 21 14 24 24 H 1.08001 * 119.99545 * 359.97438 * 23 22 21 25 25 C 1.37871 * 120.00055 * 179.97438 * 23 22 21 26 26 N 1.31521 * 119.99735 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00207 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47303 * 90.00049 * 27 25 23 29 29 H 1.48501 * 109.47148 * 210.00100 * 27 25 23 30 30 H 1.48497 * 109.46971 * 329.99886 * 27 25 23 31 31 H 1.09002 * 109.47497 * 270.01806 * 1 2 3 32 32 H 1.08999 * 109.47341 * 30.01961 * 1 2 3 33 33 H 1.09002 * 109.47233 * 150.01778 * 1 2 3 34 34 H 1.07999 * 118.58075 * 0.02562 * 3 2 1 35 35 H 1.08999 * 109.13511 * 100.92553 * 4 3 2 36 36 H 1.09008 * 109.13226 * 220.09830 * 4 3 2 37 37 H 1.07999 * 118.58362 * 199.54289 * 5 4 3 38 38 H 1.07997 * 118.52160 * 180.02562 * 6 5 4 39 39 H 0.96993 * 119.99833 * 0.02562 * 11 9 7 40 40 H 1.09000 * 109.38556 * 359.97438 * 12 11 9 41 41 H 1.09006 * 109.56833 * 306.24360 * 13 12 11 42 42 H 1.08998 * 109.66764 * 185.94940 * 13 12 11 43 43 H 1.09000 * 110.36624 * 329.71288 * 16 14 13 44 44 H 1.08999 * 110.35957 * 207.40001 * 16 14 13 45 45 H 1.08994 * 110.35998 * 241.15726 * 17 16 14 46 46 H 1.09001 * 110.45260 * 118.88962 * 17 16 14 47 47 H 1.09003 * 109.56757 * 174.11446 * 20 12 11 48 48 H 1.09001 * 109.56498 * 53.75502 * 20 12 11 49 49 H 1.09006 * 109.46634 * 44.47168 * 22 21 14 50 50 H 1.09002 * 109.46753 * 164.46656 * 22 21 14 51 51 H 0.97002 * 119.99748 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1280 1.1401 0.0000 4 6 3.6230 1.2513 0.0006 5 6 4.2610 -0.0221 0.4680 6 6 3.6397 -1.1609 0.4688 7 6 2.2241 -1.3164 0.0006 8 1 2.2250 -1.7233 -1.0107 9 6 1.5030 -2.2715 0.9166 10 8 0.5150 -1.9059 1.5175 11 7 1.9558 -3.5318 1.0677 12 6 1.2551 -4.4600 1.9585 13 6 0.7693 -5.6692 1.1541 14 6 1.9906 -6.4561 0.6521 15 1 1.7204 -7.2500 -0.0441 16 6 2.9813 -5.4451 0.0299 17 6 3.8679 -4.9858 1.2061 18 6 3.3320 -5.7603 2.4321 19 1 4.1199 -5.9959 3.1474 20 6 2.2087 -4.9235 3.0635 21 7 2.7028 -6.9758 1.8497 22 6 3.7200 -7.9651 1.4692 23 6 3.0475 -9.2667 1.1161 24 1 1.9721 -9.3507 1.1695 25 6 3.8052 -10.3501 0.7250 26 7 5.1147 -10.2475 0.6596 27 14 2.9717 -11.9638 0.2881 28 1 2.6519 -11.9790 -1.1620 29 1 3.8821 -13.0931 0.6060 30 1 1.7187 -12.1021 1.0729 31 1 -0.3634 0.0003 1.0277 32 1 -0.3634 0.8898 -0.5141 33 1 -0.3634 -0.8902 -0.5136 34 1 1.5423 2.0475 0.0004 35 1 3.9652 1.4722 -1.0105 36 1 3.9206 2.0636 0.6638 37 1 5.2814 0.0102 0.8204 38 1 4.1664 -2.0354 0.8212 39 1 2.7461 -3.8241 0.5872 40 1 0.3995 -3.9550 2.4067 41 1 0.1795 -5.3285 0.3031 42 1 0.1577 -6.3104 1.7889 43 1 2.4425 -4.5971 -0.3928 44 1 3.5874 -5.9301 -0.7353 45 1 3.7650 -3.9119 1.3617 46 1 4.9106 -5.2433 1.0203 47 1 1.6629 -5.5305 3.7859 48 1 2.6375 -4.0551 3.5636 49 1 4.2782 -7.5991 0.6074 50 1 4.4028 -8.1235 2.3039 51 1 5.6477 -11.0097 0.3840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277936903.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:06 Heat of formation + Delta-G solvation = 55.177431 kcal Electronic energy + Delta-G solvation = -29988.857745 eV Core-core repulsion = 26276.511741 eV Total energy + Delta-G solvation = -3712.346004 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.03295 -40.81496 -38.63827 -36.36472 -34.74427 -33.79254 -33.29916 -32.28627 -32.03933 -31.39927 -28.49420 -27.85461 -25.53864 -25.12115 -24.67609 -22.86794 -21.79873 -21.59753 -21.30498 -20.45614 -18.56776 -18.31517 -17.42324 -17.26328 -16.67725 -16.50284 -16.26573 -15.77114 -15.60226 -15.17753 -15.02111 -14.90392 -14.77371 -14.44442 -14.21021 -14.11983 -13.95964 -13.71730 -13.54360 -13.52096 -13.27167 -13.04224 -12.96419 -12.93119 -12.67612 -12.47923 -12.21590 -12.14738 -12.07996 -11.98600 -11.73009 -11.38304 -11.30829 -11.23093 -10.87901 -10.78293 -10.60140 -10.33126 -9.72044 -9.42386 -9.16109 -8.19607 -6.28368 1.10342 1.35599 1.40017 1.41186 1.52577 1.73204 2.39115 2.40428 3.12410 3.19794 3.51994 3.63962 3.66462 3.70940 3.88509 4.02404 4.07104 4.16680 4.18726 4.23983 4.28188 4.29576 4.36644 4.41627 4.52301 4.60127 4.71004 4.72958 4.82197 4.84660 4.86566 4.91708 4.94969 4.99025 5.02485 5.05041 5.11530 5.12634 5.19395 5.23213 5.24002 5.34457 5.38528 5.39884 5.64989 5.69332 5.82205 5.86792 6.04393 6.05857 6.30376 6.55546 6.59947 6.88156 7.29264 7.41145 8.90968 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023581 B = 0.002923 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.127345 B = 9577.670087 C =10006.822590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.123 4.123 3 C -0.157 4.157 4 C -0.067 4.067 5 C -0.133 4.133 6 C -0.180 4.180 7 C -0.037 4.037 8 H 0.122 0.878 9 C 0.510 3.490 10 O -0.570 6.570 11 N -0.736 5.736 12 C 0.147 3.853 13 C -0.107 4.107 14 C 0.069 3.931 15 H 0.075 0.925 16 C -0.173 4.173 17 C -0.172 4.172 18 C 0.056 3.944 19 H 0.080 0.920 20 C -0.105 4.105 21 N -0.507 5.507 22 C 0.202 3.798 23 C -0.520 4.520 24 H 0.058 0.942 25 C 0.003 3.997 26 N -0.933 5.933 27 Si 0.963 3.037 28 H -0.273 1.273 29 H -0.283 1.283 30 H -0.267 1.267 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.133 0.867 38 H 0.116 0.884 39 H 0.431 0.569 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.056 0.944 45 H 0.113 0.887 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.077 0.923 49 H -0.023 1.023 50 H -0.004 1.004 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 23.140 -2.638 23.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.175 4.175 4 C -0.103 4.103 5 C -0.151 4.151 6 C -0.198 4.198 7 C -0.058 4.058 8 H 0.139 0.861 9 C 0.297 3.703 10 O -0.449 6.449 11 N -0.409 5.409 12 C 0.043 3.957 13 C -0.146 4.146 14 C -0.040 4.040 15 H 0.093 0.907 16 C -0.212 4.212 17 C -0.212 4.212 18 C -0.053 4.053 19 H 0.098 0.902 20 C -0.144 4.144 21 N -0.230 5.230 22 C 0.075 3.925 23 C -0.558 4.558 24 H 0.076 0.924 25 C -0.195 4.195 26 N -0.574 5.574 27 Si 0.789 3.211 28 H -0.199 1.199 29 H -0.209 1.209 30 H -0.192 1.192 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.143 0.857 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.150 0.850 38 H 0.134 0.866 39 H 0.292 0.708 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.129 0.871 44 H 0.075 0.925 45 H 0.131 0.869 46 H 0.079 0.921 47 H 0.098 0.902 48 H 0.096 0.904 49 H -0.005 1.005 50 H 0.014 0.986 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.331 22.962 -1.888 23.443 hybrid contribution 0.929 -1.341 -0.884 1.856 sum -3.402 21.621 -2.773 22.062 Atomic orbital electron populations 1.20770 0.91758 1.01125 1.01877 1.20641 0.96243 0.93284 1.02182 1.22222 0.96722 0.97308 1.01286 1.19408 0.91454 0.96464 1.03016 1.22480 1.00617 0.94078 0.97887 1.21941 0.93924 0.99699 1.04220 1.18911 0.93421 0.93725 0.99744 0.86111 1.20980 0.84032 0.83218 0.82040 1.90636 1.27761 1.77573 1.48939 1.48983 1.33257 1.11217 1.47409 1.20861 0.95495 0.89120 0.90253 1.21982 0.96535 0.95747 1.00296 1.22907 0.94568 0.94855 0.91640 0.90705 1.23517 0.98539 1.00658 0.98524 1.23558 0.99848 1.02119 0.95642 1.23090 0.95920 0.90140 0.96193 0.90205 1.21958 0.96257 0.98811 0.97348 1.65384 1.24865 1.08632 1.24107 1.19413 0.89754 0.90387 0.92949 1.21452 0.93695 0.96673 1.43981 0.92401 1.25832 0.95383 1.02555 0.95683 1.70076 1.05816 1.32258 1.49231 0.85469 0.78380 0.78666 0.78634 1.19854 1.20888 1.19192 0.92026 0.91487 0.93518 0.85685 0.87804 0.88351 0.84961 0.86618 0.70837 0.88911 0.90662 0.90433 0.87129 0.92523 0.86949 0.92065 0.90230 0.90430 1.00515 0.98586 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.12 8.17 71.24 0.58 -1.53 16 2 C -0.12 -2.51 5.37 -15.53 -0.08 -2.59 16 3 C -0.16 -2.56 9.49 26.61 0.25 -2.31 16 4 C -0.07 -0.83 6.27 28.61 0.18 -0.65 16 5 C -0.13 -1.94 9.92 26.71 0.27 -1.68 16 6 C -0.18 -3.20 8.96 26.71 0.24 -2.96 16 7 C -0.04 -0.76 2.90 -13.53 -0.04 -0.80 16 8 H 0.12 2.13 8.14 -2.39 -0.02 2.12 16 9 C 0.51 12.89 6.85 87.66 0.60 13.49 16 10 O -0.57 -17.80 12.63 -3.04 -0.04 -17.83 16 11 N -0.74 -17.71 2.60 -442.09 -1.15 -18.85 16 12 C 0.15 3.98 3.15 45.08 0.14 4.12 16 13 C -0.11 -3.12 5.49 30.88 0.17 -2.95 16 14 C 0.07 2.46 3.53 45.35 0.16 2.62 16 15 H 0.07 3.03 7.59 -2.39 -0.02 3.01 16 16 C -0.17 -5.16 5.03 31.58 0.16 -5.00 16 17 C -0.17 -4.89 5.23 31.58 0.17 -4.72 16 18 C 0.06 1.84 3.66 45.32 0.17 2.01 16 19 H 0.08 2.76 8.01 -2.39 -0.02 2.74 16 20 C -0.11 -2.91 5.49 30.86 0.17 -2.74 16 21 N -0.51 -20.78 4.95 -832.20 -4.12 -24.90 16 22 C 0.20 10.38 4.42 85.56 0.38 10.76 16 23 C -0.52 -29.10 8.64 25.60 0.22 -28.88 16 24 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 25 C 0.00 0.19 5.46 84.65 0.46 0.65 16 26 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 27 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 28 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 29 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 30 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 31 H 0.06 1.58 6.98 -2.39 -0.02 1.56 16 32 H 0.07 1.13 7.95 -2.39 -0.02 1.11 16 33 H 0.05 1.07 7.74 -2.39 -0.02 1.05 16 34 H 0.13 1.68 7.88 -2.91 -0.02 1.66 16 35 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.12 1.96 6.30 -2.91 -0.02 1.94 16 39 H 0.43 9.70 1.61 -117.61 -0.19 9.51 16 40 H 0.09 2.64 6.89 -2.39 -0.02 2.63 16 41 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.11 2.70 5.26 -2.39 -0.01 2.68 16 44 H 0.06 1.87 7.88 -2.39 -0.02 1.85 16 45 H 0.11 2.57 3.78 -2.39 -0.01 2.57 16 46 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 49 H -0.02 -1.25 6.89 -2.38 -0.02 -1.27 16 50 H 0.00 -0.23 7.99 -2.39 -0.02 -0.24 16 51 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -66.60 374.43 1.93 -64.68 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.73 Total: 29.08 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: 4.19 Total: -23.17 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -4.98 Total: -98.94 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.04 Total: -17.83 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -66.60 1.93 -64.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936903.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.853 kcal (2) G-P(sol) polarization free energy of solvation -66.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds