Wall clock time and date at job start Tue Mar 31 2020 15:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.29828 * 118.58110 * 2 1 4 4 C 1.49916 * 122.83577 * 180.02562 * 3 2 1 5 5 C 1.49904 * 111.18901 * 19.51573 * 4 3 2 6 6 C 1.29828 * 122.84528 * 340.46070 * 5 4 3 7 7 C 1.49913 * 118.58010 * 179.97438 * 2 1 3 8 8 H 1.09000 * 109.15613 * 280.88308 * 7 2 1 9 9 C 1.50699 * 109.12591 * 40.00834 * 7 2 1 10 10 O 1.21287 * 119.99799 * 26.72028 * 9 7 2 11 11 N 1.34780 * 120.00364 * 206.72309 * 9 7 2 12 12 C 1.47148 * 120.67871 * 359.72284 * 11 9 7 13 13 C 1.54284 * 107.83794 * 132.59289 * 12 11 9 14 14 H 1.09001 * 112.57472 * 182.46835 * 13 12 11 15 15 C 1.54553 * 107.94909 * 306.86061 * 13 12 11 16 16 C 1.54253 * 104.93859 * 88.91509 * 15 13 12 17 17 C 1.54548 * 104.94300 * 0.02562 * 16 15 13 18 18 H 1.08992 * 112.20531 * 147.09439 * 17 16 15 19 19 C 1.47153 * 120.68355 * 179.97438 * 11 9 7 20 20 N 1.48729 * 107.07802 * 58.66765 * 13 12 11 21 21 C 1.46903 * 111.00149 * 167.36448 * 20 13 12 22 22 C 1.53000 * 109.46710 * 284.79268 * 21 20 13 23 23 C 1.50705 * 109.46726 * 179.97438 * 22 21 20 24 24 H 1.07990 * 120.00328 * 359.97438 * 23 22 21 25 25 C 1.37881 * 119.99577 * 179.97438 * 23 22 21 26 26 N 1.31507 * 120.00469 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99652 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46865 * 60.00301 * 27 25 23 29 29 H 1.48494 * 109.47046 * 179.97438 * 27 25 23 30 30 H 1.48498 * 109.47149 * 300.00301 * 27 25 23 31 31 H 1.08994 * 109.47572 * 84.89395 * 1 2 3 32 32 H 1.09005 * 109.47148 * 204.89618 * 1 2 3 33 33 H 1.09003 * 109.46967 * 324.89087 * 1 2 3 34 34 H 1.07995 * 118.57920 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.13030 * 259.07992 * 4 3 2 36 36 H 1.09000 * 109.13352 * 139.95753 * 4 3 2 37 37 H 1.08002 * 118.57786 * 160.43268 * 5 4 3 38 38 H 1.07994 * 118.58545 * 179.71585 * 6 5 4 39 39 H 1.09007 * 109.74214 * 252.29316 * 12 11 9 40 40 H 1.09002 * 109.75052 * 13.01331 * 12 11 9 41 41 H 1.08999 * 110.34595 * 330.04524 * 15 13 12 42 42 H 1.09001 * 110.43618 * 207.82583 * 15 13 12 43 43 H 1.09001 * 110.34584 * 241.13826 * 16 15 13 44 44 H 1.08998 * 110.34642 * 118.87312 * 16 15 13 45 45 H 1.09005 * 109.74513 * 346.97855 * 19 11 9 46 46 H 1.08995 * 109.74443 * 107.70381 * 19 11 9 47 47 H 1.08998 * 109.47270 * 44.79397 * 21 20 13 48 48 H 1.09001 * 109.47059 * 164.79363 * 21 20 13 49 49 H 1.08995 * 109.47334 * 299.99545 * 22 21 20 50 50 H 1.09001 * 109.47282 * 60.00231 * 22 21 20 51 51 H 0.97003 * 120.00684 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1281 1.1401 0.0000 4 6 3.6231 1.2513 -0.0006 5 6 4.2610 -0.0222 -0.4680 6 6 3.6400 -1.1623 -0.4676 7 6 2.2242 -1.3165 0.0006 8 1 2.2246 -1.7231 1.0119 9 6 1.5027 -2.2722 -0.9143 10 8 0.8482 -1.8460 -1.8423 11 7 1.5847 -3.6005 -0.7015 12 6 2.3793 -4.1342 0.4160 13 6 1.5174 -5.1817 1.1510 14 1 2.0192 -5.5982 2.0244 15 6 0.1686 -4.5194 1.5130 16 6 -0.7385 -4.7712 0.2911 17 6 0.1412 -5.5641 -0.7018 18 1 -0.4398 -6.2728 -1.2918 19 6 0.8858 -4.5472 -1.5852 20 7 1.1584 -6.2276 0.1564 21 6 0.5961 -7.4125 0.8180 22 6 1.7210 -8.2052 1.4865 23 6 1.1441 -9.4205 2.1658 24 1 0.0814 -9.6083 2.1252 25 6 1.9731 -10.2925 2.8392 26 7 3.2671 -10.0636 2.8892 27 14 1.2578 -11.7985 3.6819 28 1 0.5795 -12.6536 2.6750 29 1 2.3498 -12.5687 4.3295 30 1 0.2757 -11.3706 4.7103 31 1 -0.3634 0.0915 -1.0235 32 1 -0.3634 -0.9322 0.4326 33 1 -0.3633 0.8407 0.5911 34 1 1.5425 2.0474 -0.0004 35 1 3.9653 1.4721 1.0105 36 1 3.9207 2.0641 -0.6630 37 1 5.2813 0.0102 -0.8208 38 1 4.1644 -2.0365 -0.8240 39 1 3.2859 -4.6026 0.0326 40 1 2.6421 -3.3269 1.0997 41 1 0.3024 -3.4494 1.6717 42 1 -0.2566 -4.9836 2.4028 43 1 -1.0505 -3.8249 -0.1507 44 1 -1.6087 -5.3606 0.5801 45 1 0.1722 -4.0097 -2.2098 46 1 1.6090 -5.0662 -2.2143 47 1 -0.1256 -7.0992 1.5724 48 1 0.0991 -8.0401 0.0783 49 1 2.4427 -8.5186 0.7322 50 1 2.2180 -7.5776 2.2263 51 1 3.8503 -10.6768 3.3632 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277940550.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:41 Heat of formation + Delta-G solvation = 6.945825 kcal Electronic energy + Delta-G solvation = -29572.617301 eV Core-core repulsion = 25858.179817 eV Total energy + Delta-G solvation = -3714.437483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16930 -39.60130 -37.69729 -34.91094 -33.36397 -33.08089 -32.00940 -31.28144 -30.86367 -28.77967 -27.53876 -26.43680 -24.89911 -24.27381 -23.77748 -21.13859 -20.84190 -20.35402 -19.93248 -18.48098 -17.45049 -16.77320 -16.39856 -16.20219 -15.84109 -15.24089 -15.12775 -14.75026 -14.53350 -14.32501 -14.13128 -13.81754 -13.66242 -13.49451 -13.39682 -12.89820 -12.81322 -12.56647 -12.42938 -12.29405 -12.25725 -12.14715 -11.55273 -11.44702 -11.36361 -11.11366 -10.94976 -10.82121 -10.69971 -10.63063 -10.56537 -10.32301 -9.98716 -9.92816 -9.55694 -9.43055 -9.17282 -8.70667 -8.63117 -8.37113 -7.97993 -6.02712 -4.05280 1.82542 2.07411 2.65366 3.04020 3.30853 3.35705 3.37745 4.17058 4.28893 4.38064 4.44991 4.58686 4.79460 4.80615 4.90465 4.96422 5.01684 5.07089 5.11371 5.17220 5.31678 5.33538 5.35388 5.42369 5.45378 5.54180 5.57741 5.67033 5.71344 5.76396 5.81605 5.84686 5.88717 5.94608 6.00213 6.02620 6.07501 6.09320 6.16791 6.35469 6.46288 6.51498 6.54365 6.59079 6.73582 6.90542 7.25193 7.32815 7.48516 7.71918 7.84285 8.04172 8.17727 8.39624 9.01712 9.58621 11.08439 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021473 B = 0.002734 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.677863 B =10239.704054 C =10773.750948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.164 4.164 4 C -0.062 4.062 5 C -0.142 4.142 6 C -0.148 4.148 7 C -0.040 4.040 8 H 0.111 0.889 9 C 0.527 3.473 10 O -0.540 6.540 11 N -0.600 5.600 12 C 0.117 3.883 13 C 0.050 3.950 14 H 0.113 0.887 15 C -0.142 4.142 16 C -0.142 4.142 17 C 0.045 3.955 18 H 0.101 0.899 19 C 0.127 3.873 20 N -0.500 5.500 21 C 0.053 3.947 22 C 0.033 3.967 23 C -0.523 4.523 24 H 0.052 0.948 25 C 0.060 3.940 26 N -0.893 5.893 27 Si 0.891 3.109 28 H -0.277 1.277 29 H -0.287 1.287 30 H -0.278 1.278 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.026 0.974 48 H 0.060 0.940 49 H 0.023 0.977 50 H 0.014 0.986 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.452 21.585 -5.151 22.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.182 4.182 4 C -0.098 4.098 5 C -0.160 4.160 6 C -0.167 4.167 7 C -0.061 4.061 8 H 0.128 0.872 9 C 0.315 3.685 10 O -0.418 6.418 11 N -0.333 5.333 12 C -0.006 4.006 13 C -0.060 4.060 14 H 0.131 0.869 15 C -0.182 4.182 16 C -0.181 4.181 17 C -0.064 4.064 18 H 0.119 0.881 19 C 0.005 3.995 20 N -0.222 5.222 21 C -0.074 4.074 22 C -0.004 4.004 23 C -0.562 4.562 24 H 0.071 0.929 25 C -0.142 4.142 26 N -0.532 5.532 27 Si 0.719 3.281 28 H -0.202 1.202 29 H -0.213 1.213 30 H -0.203 1.203 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.131 0.869 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.091 0.909 47 H 0.044 0.956 48 H 0.078 0.922 49 H 0.042 0.958 50 H 0.033 0.967 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.165 21.511 -5.903 22.337 hybrid contribution -1.011 -0.853 1.084 1.710 sum -2.177 20.658 -4.819 21.324 Atomic orbital electron populations 1.20865 0.91647 1.01645 1.02771 1.20509 0.95995 0.92927 1.00152 1.21903 0.95671 0.97334 1.03295 1.19245 0.92558 0.96410 1.01601 1.22178 0.99923 0.94123 0.99817 1.21801 0.93949 0.98861 1.02041 1.18979 0.93369 0.93769 0.99963 0.87167 1.20232 0.80825 0.82163 0.85319 1.90661 1.42131 1.77103 1.31872 1.48146 1.49611 1.05164 1.30381 1.22178 0.94300 0.96341 0.87823 1.23509 0.95328 0.91550 0.95586 0.86906 1.22796 0.96509 1.00479 0.98375 1.22801 0.98704 1.00352 0.96288 1.23446 0.92290 0.95003 0.95703 0.88124 1.21810 0.96333 0.89519 0.91870 1.65432 1.34778 1.04617 1.17368 1.22444 0.98590 0.89816 0.96519 1.19016 0.92863 0.93547 0.95013 1.21146 0.93717 1.08061 1.33273 0.92936 1.24977 0.94817 0.97981 0.96424 1.69950 1.03036 1.37404 1.42778 0.86678 0.78615 0.83039 0.79774 1.20245 1.21268 1.20320 0.90418 0.92516 0.92232 0.86943 0.89565 0.90163 0.86722 0.86657 0.90108 0.89858 0.91996 0.91400 0.91685 0.91852 0.89369 0.90858 0.95558 0.92169 0.95817 0.96746 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 8.48 36.01 0.31 -0.89 16 2 C -0.10 -1.04 5.22 -101.12 -0.53 -1.57 16 3 C -0.16 -1.55 9.50 -36.07 -0.34 -1.89 16 4 C -0.06 -0.49 6.27 -29.80 -0.19 -0.68 16 5 C -0.14 -1.27 9.92 -36.08 -0.36 -1.62 16 6 C -0.15 -1.52 9.08 -36.07 -0.33 -1.84 16 7 C -0.04 -0.44 2.14 -94.83 -0.20 -0.65 16 8 H 0.11 1.10 6.09 -51.93 -0.32 0.78 16 9 C 0.53 6.98 6.01 -10.98 -0.07 6.91 16 10 O -0.54 -8.72 14.32 5.55 0.08 -8.64 16 11 N -0.60 -7.66 2.24 -171.28 -0.38 -8.04 16 12 C 0.12 1.42 5.79 -3.02 -0.02 1.40 16 13 C 0.05 0.73 3.53 -65.21 -0.23 0.50 16 14 H 0.11 1.83 6.75 -51.93 -0.35 1.48 16 15 C -0.14 -1.90 5.47 -25.26 -0.14 -2.03 16 16 C -0.14 -1.88 5.68 -25.26 -0.14 -2.03 16 17 C 0.05 0.63 3.66 -65.42 -0.24 0.39 16 18 H 0.10 1.35 7.99 -51.93 -0.42 0.94 16 19 C 0.13 1.69 5.89 -3.21 -0.02 1.67 16 20 N -0.50 -8.28 4.93 -212.55 -1.05 -9.33 16 21 C 0.05 1.06 4.60 -3.82 -0.02 1.04 16 22 C 0.03 0.82 5.09 -27.88 -0.14 0.68 16 23 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 24 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 25 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 26 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 27 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 29 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 30 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 31 H 0.08 0.93 7.55 -51.93 -0.39 0.54 16 32 H 0.06 0.63 7.70 -51.93 -0.40 0.23 16 33 H 0.06 0.52 8.04 -51.93 -0.42 0.10 16 34 H 0.11 0.91 7.94 -52.49 -0.42 0.49 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.11 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 40 H 0.08 0.83 5.47 -51.93 -0.28 0.55 16 41 H 0.06 0.74 7.85 -51.93 -0.41 0.34 16 42 H 0.07 0.95 7.93 -51.93 -0.41 0.54 16 43 H 0.06 0.85 7.84 -51.93 -0.41 0.45 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.09 1.19 7.11 -51.93 -0.37 0.82 16 46 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.03 0.52 6.98 -51.93 -0.36 0.16 16 48 H 0.06 1.20 7.98 -51.93 -0.41 0.79 16 49 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.01 0.37 6.83 -51.93 -0.35 0.02 16 51 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 387.60 15.07 5.84 5.84 Total: -1.00 -30.95 387.60 -11.50 -42.46 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -8.64 Total: 0.71 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -3.06 Total: -13.75 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: -0.69 Total: -42.90 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.08 Total: -8.64 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.95 -11.50 -42.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940550.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.402 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds