Wall clock time and date at job start Tue Mar 31 2020 15:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.29828 * 118.58110 * 2 1 4 4 C 1.49916 * 122.83577 * 180.02562 * 3 2 1 5 5 C 1.49904 * 111.18901 * 19.51573 * 4 3 2 6 6 C 1.29828 * 122.84528 * 340.46070 * 5 4 3 7 7 C 1.49913 * 118.58010 * 179.97438 * 2 1 3 8 8 H 1.09000 * 109.15613 * 280.88308 * 7 2 1 9 9 C 1.50699 * 109.12591 * 40.00834 * 7 2 1 10 10 O 1.21287 * 119.99799 * 26.72028 * 9 7 2 11 11 N 1.34780 * 120.00364 * 206.72309 * 9 7 2 12 12 C 1.47148 * 120.67871 * 359.72284 * 11 9 7 13 13 C 1.54284 * 107.83794 * 132.59289 * 12 11 9 14 14 H 1.09001 * 112.57472 * 182.46835 * 13 12 11 15 15 C 1.54553 * 107.94909 * 306.86061 * 13 12 11 16 16 C 1.54253 * 104.93859 * 88.91509 * 15 13 12 17 17 C 1.54548 * 104.94300 * 0.02562 * 16 15 13 18 18 H 1.08992 * 112.20531 * 147.09439 * 17 16 15 19 19 C 1.47153 * 120.68355 * 179.97438 * 11 9 7 20 20 N 1.48729 * 107.07802 * 58.66765 * 13 12 11 21 21 C 1.46903 * 111.00149 * 167.36448 * 20 13 12 22 22 C 1.53000 * 109.46710 * 284.79268 * 21 20 13 23 23 C 1.50705 * 109.46726 * 179.97438 * 22 21 20 24 24 H 1.07990 * 120.00328 * 359.97438 * 23 22 21 25 25 C 1.37881 * 119.99577 * 179.97438 * 23 22 21 26 26 N 1.31507 * 120.00469 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99652 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46865 * 60.00301 * 27 25 23 29 29 H 1.48494 * 109.47046 * 179.97438 * 27 25 23 30 30 H 1.48498 * 109.47149 * 300.00301 * 27 25 23 31 31 H 1.08994 * 109.47572 * 84.89395 * 1 2 3 32 32 H 1.09005 * 109.47148 * 204.89618 * 1 2 3 33 33 H 1.09003 * 109.46967 * 324.89087 * 1 2 3 34 34 H 1.07995 * 118.57920 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.13030 * 259.07992 * 4 3 2 36 36 H 1.09000 * 109.13352 * 139.95753 * 4 3 2 37 37 H 1.08002 * 118.57786 * 160.43268 * 5 4 3 38 38 H 1.07994 * 118.58545 * 179.71585 * 6 5 4 39 39 H 1.09007 * 109.74214 * 252.29316 * 12 11 9 40 40 H 1.09002 * 109.75052 * 13.01331 * 12 11 9 41 41 H 1.08999 * 110.34595 * 330.04524 * 15 13 12 42 42 H 1.09001 * 110.43618 * 207.82583 * 15 13 12 43 43 H 1.09001 * 110.34584 * 241.13826 * 16 15 13 44 44 H 1.08998 * 110.34642 * 118.87312 * 16 15 13 45 45 H 1.09005 * 109.74513 * 346.97855 * 19 11 9 46 46 H 1.08995 * 109.74443 * 107.70381 * 19 11 9 47 47 H 1.08998 * 109.47270 * 44.79397 * 21 20 13 48 48 H 1.09001 * 109.47059 * 164.79363 * 21 20 13 49 49 H 1.08995 * 109.47334 * 299.99545 * 22 21 20 50 50 H 1.09001 * 109.47282 * 60.00231 * 22 21 20 51 51 H 0.97003 * 120.00684 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1281 1.1401 0.0000 4 6 3.6231 1.2513 -0.0006 5 6 4.2610 -0.0222 -0.4680 6 6 3.6400 -1.1623 -0.4676 7 6 2.2242 -1.3165 0.0006 8 1 2.2246 -1.7231 1.0119 9 6 1.5027 -2.2722 -0.9143 10 8 0.8482 -1.8460 -1.8423 11 7 1.5847 -3.6005 -0.7015 12 6 2.3793 -4.1342 0.4160 13 6 1.5174 -5.1817 1.1510 14 1 2.0192 -5.5982 2.0244 15 6 0.1686 -4.5194 1.5130 16 6 -0.7385 -4.7712 0.2911 17 6 0.1412 -5.5641 -0.7018 18 1 -0.4398 -6.2728 -1.2918 19 6 0.8858 -4.5472 -1.5852 20 7 1.1584 -6.2276 0.1564 21 6 0.5961 -7.4125 0.8180 22 6 1.7210 -8.2052 1.4865 23 6 1.1441 -9.4205 2.1658 24 1 0.0814 -9.6083 2.1252 25 6 1.9731 -10.2925 2.8392 26 7 3.2671 -10.0636 2.8892 27 14 1.2578 -11.7985 3.6819 28 1 0.5795 -12.6536 2.6750 29 1 2.3498 -12.5687 4.3295 30 1 0.2757 -11.3706 4.7103 31 1 -0.3634 0.0915 -1.0235 32 1 -0.3634 -0.9322 0.4326 33 1 -0.3633 0.8407 0.5911 34 1 1.5425 2.0474 -0.0004 35 1 3.9653 1.4721 1.0105 36 1 3.9207 2.0641 -0.6630 37 1 5.2813 0.0102 -0.8208 38 1 4.1644 -2.0365 -0.8240 39 1 3.2859 -4.6026 0.0326 40 1 2.6421 -3.3269 1.0997 41 1 0.3024 -3.4494 1.6717 42 1 -0.2566 -4.9836 2.4028 43 1 -1.0505 -3.8249 -0.1507 44 1 -1.6087 -5.3606 0.5801 45 1 0.1722 -4.0097 -2.2098 46 1 1.6090 -5.0662 -2.2143 47 1 -0.1256 -7.0992 1.5724 48 1 0.0991 -8.0401 0.0783 49 1 2.4427 -8.5186 0.7322 50 1 2.2180 -7.5776 2.2263 51 1 3.8503 -10.6768 3.3632 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277940550.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:40 Heat of formation + Delta-G solvation = -9.509423 kcal Electronic energy + Delta-G solvation = -29573.330854 eV Core-core repulsion = 25858.179817 eV Total energy + Delta-G solvation = -3715.151036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.25546 -40.61314 -38.62537 -36.26636 -35.13931 -33.85611 -33.24450 -32.70514 -31.75815 -30.33670 -28.49972 -27.62083 -26.00403 -25.65043 -24.97017 -22.68434 -21.73811 -21.31893 -21.25831 -19.60983 -18.68887 -18.25413 -17.65291 -17.31016 -16.57574 -16.54139 -16.29437 -16.13257 -15.89134 -15.39895 -15.18053 -14.98580 -14.70346 -14.42647 -14.30825 -14.21465 -14.20004 -13.69979 -13.61830 -13.52954 -13.28774 -13.08742 -13.00324 -12.86926 -12.77831 -12.44816 -12.35206 -12.16649 -12.02597 -11.85309 -11.75841 -11.44072 -11.33668 -11.29338 -11.18757 -10.97646 -10.51915 -10.31532 -9.80398 -9.45675 -9.30014 -8.18123 -6.28672 1.09184 1.31930 1.40969 1.43203 1.51039 1.66214 2.02124 2.41048 2.95594 3.15422 3.40183 3.60741 3.64773 3.72158 3.88977 3.91506 3.94265 4.09392 4.14042 4.25847 4.29769 4.38032 4.43018 4.46709 4.53994 4.61493 4.62365 4.66952 4.71978 4.76360 4.80538 4.84451 4.86173 4.91776 4.93624 4.95135 5.05256 5.09546 5.12505 5.19532 5.23393 5.32117 5.45713 5.48638 5.67081 5.79868 5.81767 5.85259 6.00586 6.00855 6.13308 6.31819 6.42936 6.88334 7.14191 7.40148 8.93368 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021473 B = 0.002734 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.677863 B =10239.704054 C =10773.750948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.125 4.125 3 C -0.154 4.154 4 C -0.067 4.067 5 C -0.133 4.133 6 C -0.173 4.173 7 C -0.034 4.034 8 H 0.119 0.881 9 C 0.528 3.472 10 O -0.571 6.571 11 N -0.599 5.599 12 C 0.125 3.875 13 C 0.046 3.954 14 H 0.093 0.907 15 C -0.136 4.136 16 C -0.135 4.135 17 C 0.048 3.952 18 H 0.107 0.893 19 C 0.131 3.869 20 N -0.513 5.513 21 C 0.074 3.926 22 C 0.043 3.957 23 C -0.544 4.544 24 H 0.057 0.943 25 C 0.004 3.996 26 N -0.929 5.929 27 Si 0.961 3.039 28 H -0.269 1.269 29 H -0.284 1.284 30 H -0.267 1.267 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.076 0.924 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.027 0.973 48 H 0.058 0.942 49 H -0.010 1.010 50 H -0.005 1.005 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.734 23.093 -4.648 23.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.126 4.126 3 C -0.172 4.172 4 C -0.103 4.103 5 C -0.151 4.151 6 C -0.192 4.192 7 C -0.055 4.055 8 H 0.136 0.864 9 C 0.318 3.682 10 O -0.451 6.451 11 N -0.330 5.330 12 C 0.002 3.998 13 C -0.063 4.063 14 H 0.111 0.889 15 C -0.175 4.175 16 C -0.174 4.174 17 C -0.062 4.062 18 H 0.125 0.875 19 C 0.008 3.992 20 N -0.235 5.235 21 C -0.054 4.054 22 C 0.006 3.994 23 C -0.582 4.582 24 H 0.075 0.925 25 C -0.194 4.194 26 N -0.569 5.569 27 Si 0.785 3.215 28 H -0.194 1.194 29 H -0.209 1.209 30 H -0.192 1.192 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.144 0.856 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.150 0.850 38 H 0.131 0.869 39 H 0.094 0.906 40 H 0.128 0.872 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.045 0.955 48 H 0.077 0.923 49 H 0.009 0.991 50 H 0.013 0.987 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.453 23.028 -5.399 23.697 hybrid contribution -0.860 -1.231 0.886 1.744 sum -2.313 21.798 -4.513 22.380 Atomic orbital electron populations 1.20787 0.91920 1.01896 1.01728 1.20603 0.96056 0.93365 1.02543 1.22221 0.96797 0.97319 1.00846 1.19407 0.91420 0.96409 1.03071 1.22486 1.00625 0.93980 0.97992 1.21824 0.93728 0.99587 1.04054 1.18947 0.93578 0.93348 0.99595 0.86416 1.20680 0.80214 0.82212 0.85132 1.90644 1.43542 1.77539 1.33349 1.48167 1.49430 1.05211 1.30242 1.22136 0.93339 0.96404 0.87874 1.23517 0.96387 0.91554 0.94886 0.88893 1.22735 0.95492 1.01254 0.98024 1.22732 0.98446 1.00367 0.95883 1.23492 0.91972 0.95153 0.95559 0.87481 1.21718 0.96264 0.89378 0.91795 1.65349 1.35593 1.04618 1.17956 1.22019 0.96439 0.90727 0.96230 1.18822 0.93538 0.93357 0.93718 1.21590 0.94116 1.09057 1.33457 0.92461 1.25886 0.95135 1.01243 0.97120 1.70083 1.04433 1.38702 1.43677 0.85573 0.78006 0.79058 0.78835 1.19382 1.20890 1.19242 0.92404 0.93489 0.90448 0.85557 0.87679 0.88317 0.84985 0.86915 0.90600 0.87249 0.90323 0.92178 0.91239 0.91754 0.89295 0.91212 0.95482 0.92331 0.99134 0.98651 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.17 8.48 71.24 0.60 -1.57 16 2 C -0.13 -2.54 5.22 -15.52 -0.08 -2.62 16 3 C -0.15 -2.51 9.50 26.61 0.25 -2.26 16 4 C -0.07 -0.84 6.27 28.61 0.18 -0.66 16 5 C -0.13 -2.02 9.92 26.61 0.26 -1.76 16 6 C -0.17 -3.28 9.08 26.61 0.24 -3.04 16 7 C -0.03 -0.71 2.14 -13.52 -0.03 -0.74 16 8 H 0.12 2.14 6.09 -2.39 -0.01 2.12 16 9 C 0.53 13.65 6.01 87.66 0.53 14.17 16 10 O -0.57 -18.33 14.32 -3.05 -0.04 -18.38 16 11 N -0.60 -14.94 2.24 -814.19 -1.82 -16.76 16 12 C 0.13 2.99 5.79 86.69 0.50 3.49 16 13 C 0.05 1.35 3.53 45.52 0.16 1.51 16 14 H 0.09 3.12 6.75 -2.39 -0.02 3.10 16 15 C -0.14 -3.52 5.47 31.55 0.17 -3.34 16 16 C -0.14 -3.46 5.68 31.55 0.18 -3.28 16 17 C 0.05 1.31 3.66 45.40 0.17 1.48 16 18 H 0.11 2.81 7.99 -2.39 -0.02 2.79 16 19 C 0.13 3.45 5.89 86.56 0.51 3.96 16 20 N -0.51 -17.20 4.93 -826.37 -4.07 -21.27 16 21 C 0.07 2.97 4.60 86.30 0.40 3.37 16 22 C 0.04 2.22 5.09 29.85 0.15 2.37 16 23 C -0.54 -30.41 9.11 25.60 0.23 -30.17 16 24 H 0.06 3.07 7.74 -2.92 -0.02 3.05 16 25 C 0.00 0.25 5.46 84.66 0.46 0.71 16 26 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 27 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 29 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 30 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 31 H 0.06 1.38 7.55 -2.39 -0.02 1.37 16 32 H 0.05 1.01 7.70 -2.38 -0.02 0.99 16 33 H 0.08 1.22 8.04 -2.39 -0.02 1.20 16 34 H 0.13 1.67 7.94 -2.91 -0.02 1.65 16 35 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.13 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.11 2.13 8.06 -2.91 -0.02 2.10 16 39 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.11 2.05 5.47 -2.39 -0.01 2.04 16 41 H 0.08 1.77 7.85 -2.39 -0.02 1.75 16 42 H 0.06 1.65 7.93 -2.39 -0.02 1.63 16 43 H 0.07 1.74 7.84 -2.39 -0.02 1.72 16 44 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.09 2.36 7.11 -2.38 -0.02 2.35 16 46 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.03 1.08 6.98 -2.39 -0.02 1.06 16 48 H 0.06 2.36 7.98 -2.39 -0.02 2.34 16 49 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 50 H 0.00 -0.26 6.83 -2.39 -0.02 -0.28 16 51 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -67.35 387.60 2.17 -65.18 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.90 Total: 19.32 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 4.89 Total: -18.37 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -5.61 Total: -93.48 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.04 Total: -18.38 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -67.35 2.17 -65.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940550.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.672 kcal (2) G-P(sol) polarization free energy of solvation -67.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds