Wall clock time and date at job start Tue Mar 31 2020 15:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.29710 * 118.49668 * 2 1 4 4 C 1.49905 * 122.80255 * 179.97438 * 3 2 1 5 5 C 1.49908 * 111.19306 * 19.58287 * 4 3 2 6 6 C 1.29826 * 122.83723 * 340.48157 * 5 4 3 7 7 C 1.49905 * 122.83883 * 359.95231 * 6 5 4 8 8 H 1.08997 * 109.13588 * 139.94755 * 7 6 5 9 9 C 1.50701 * 109.13650 * 259.13080 * 7 6 5 10 10 O 1.21280 * 120.00475 * 120.82252 * 9 7 6 11 11 N 1.34779 * 119.99703 * 300.81026 * 9 7 6 12 12 C 1.47150 * 120.68303 * 179.97438 * 11 9 7 13 13 C 1.53891 * 108.04211 * 132.64003 * 12 11 9 14 14 H 1.08995 * 112.12493 * 182.01637 * 13 12 11 15 15 C 1.54553 * 108.35565 * 306.39757 * 13 12 11 16 16 C 1.54263 * 104.93661 * 89.19902 * 15 13 12 17 17 C 1.54543 * 104.94206 * 359.97438 * 16 15 13 18 18 H 1.08996 * 112.20527 * 146.47364 * 17 16 15 19 19 C 1.49048 * 120.03512 * 358.76913 * 11 9 7 20 20 N 1.48725 * 107.17545 * 58.43857 * 13 12 11 21 21 C 1.46907 * 111.00366 * 166.86415 * 20 13 12 22 22 C 1.53004 * 109.46919 * 298.78614 * 21 20 13 23 23 C 1.50694 * 109.47127 * 185.40251 * 22 21 20 24 24 H 1.08007 * 120.00008 * 359.97438 * 23 22 21 25 25 C 1.37872 * 120.00263 * 180.02562 * 23 22 21 26 26 N 1.31513 * 120.00449 * 179.97438 * 25 23 22 27 27 Si 1.86808 * 119.99722 * 359.97438 * 25 23 22 28 28 H 1.48490 * 109.47054 * 90.00338 * 27 25 23 29 29 H 1.48502 * 109.46822 * 210.00026 * 27 25 23 30 30 H 1.48495 * 109.47159 * 329.99589 * 27 25 23 31 31 H 1.08994 * 109.46884 * 269.97358 * 1 2 3 32 32 H 1.09004 * 109.46910 * 29.97169 * 1 2 3 33 33 H 1.08999 * 109.46919 * 149.96752 * 1 2 3 34 34 H 1.08001 * 118.61138 * 359.97438 * 3 2 1 35 35 H 1.09001 * 109.13492 * 259.13849 * 4 3 2 36 36 H 1.09005 * 109.13474 * 140.02715 * 4 3 2 37 37 H 1.08005 * 118.58208 * 160.45771 * 5 4 3 38 38 H 1.08000 * 118.58143 * 179.97438 * 6 5 4 39 39 H 1.09006 * 109.75018 * 13.00362 * 12 11 9 40 40 H 1.09003 * 109.75092 * 252.27187 * 12 11 9 41 41 H 1.09003 * 110.34367 * 330.34114 * 15 13 12 42 42 H 1.08993 * 110.34961 * 208.06742 * 15 13 12 43 43 H 1.09002 * 110.34597 * 241.13188 * 16 15 13 44 44 H 1.09001 * 110.34326 * 118.86751 * 16 15 13 45 45 H 1.08998 * 108.52720 * 107.83183 * 19 11 9 46 46 H 1.09004 * 111.23693 * 346.95648 * 19 11 9 47 47 H 1.09001 * 109.46820 * 58.78159 * 21 20 13 48 48 H 1.08994 * 109.47032 * 178.78493 * 21 20 13 49 49 H 1.09003 * 109.46919 * 305.40094 * 22 21 20 50 50 H 1.09003 * 109.47157 * 65.39928 * 22 21 20 51 51 H 0.97000 * 120.00311 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1259 1.1399 0.0000 4 6 3.6207 1.2525 0.0006 5 6 4.2602 -0.0200 -0.4674 6 6 3.6400 -1.1606 -0.4686 7 6 2.2242 -1.3165 -0.0012 8 1 1.7030 -2.0067 -0.6644 9 6 2.2246 -1.8799 1.3965 10 8 1.7060 -1.2597 2.3006 11 7 2.8012 -3.0732 1.6419 12 6 2.8108 -3.6372 3.0010 13 6 2.3670 -5.1079 2.9098 14 1 2.3165 -5.5830 3.8895 15 6 1.0147 -5.1629 2.1636 16 6 1.3882 -5.2935 0.6726 17 6 2.9334 -5.3053 0.6485 18 1 3.3281 -5.9358 -0.1482 19 6 3.4145 -3.8488 0.5266 20 7 3.3183 -5.7980 1.9983 21 6 3.1700 -7.2568 2.0888 22 6 3.4786 -7.7131 3.5163 23 6 3.4565 -9.2186 3.5781 24 1 3.2432 -9.7926 2.6884 25 6 3.7074 -9.8633 4.7707 26 7 3.6877 -11.1772 4.8249 27 14 4.0756 -8.8706 6.3097 28 1 2.8073 -8.5744 7.0229 29 1 4.9730 -9.6508 7.1991 30 1 4.7393 -7.5975 5.9305 31 1 -0.3633 -0.0005 1.0276 32 1 -0.3633 0.8903 -0.5134 33 1 -0.3633 -0.8897 -0.5143 34 1 1.5394 2.0468 -0.0004 35 1 3.9621 1.4730 1.0120 36 1 3.9181 2.0662 -0.6611 37 1 5.2808 0.0135 -0.8191 38 1 4.1669 -2.0349 -0.8212 39 1 2.1190 -3.0824 3.6349 40 1 3.8172 -3.5813 3.4159 41 1 0.4503 -4.2460 2.3340 42 1 0.4382 -6.0294 2.4873 43 1 1.0073 -4.4408 0.1104 44 1 0.9952 -6.2243 0.2637 45 1 4.4986 -3.8086 0.6319 46 1 3.1227 -3.4445 -0.4427 47 1 2.1479 -7.5347 1.8315 48 1 3.8622 -7.7359 1.3965 49 1 4.4648 -7.3519 3.8080 50 1 2.7283 -7.3104 4.1967 51 1 3.8646 -11.6308 5.6638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277940552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:44 Heat of formation + Delta-G solvation = 12.791840 kcal Electronic energy + Delta-G solvation = -29697.984070 eV Core-core repulsion = 25983.800088 eV Total energy + Delta-G solvation = -3714.183981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18651 -39.66751 -37.67592 -35.00985 -33.37206 -33.03430 -32.10415 -31.56033 -30.80018 -29.12549 -27.68658 -26.62112 -24.84323 -24.43641 -23.67342 -21.15838 -20.86119 -20.59799 -19.72190 -18.50691 -17.50730 -16.96271 -16.71548 -16.16489 -15.99548 -15.49405 -15.09826 -14.65503 -14.47055 -14.17410 -13.98999 -13.87027 -13.81000 -13.56096 -13.38685 -13.17246 -12.97716 -12.71545 -12.58361 -12.50477 -12.26550 -12.16013 -11.71777 -11.55334 -11.38451 -11.34235 -11.00631 -10.83073 -10.78471 -10.59469 -10.37536 -10.22373 -10.02524 -9.89612 -9.76296 -9.52143 -9.23548 -8.77501 -8.70026 -8.56045 -8.09348 -6.07206 -4.05697 1.74831 2.03512 2.65920 3.00106 3.29688 3.37883 3.42466 4.09175 4.23764 4.42514 4.43438 4.46651 4.71074 4.76428 4.85199 4.88779 4.93693 5.00950 5.05748 5.11581 5.13826 5.26943 5.34624 5.36078 5.43008 5.49629 5.51290 5.57065 5.62658 5.69434 5.73275 5.78629 5.80397 5.86295 5.94755 5.98194 5.98848 5.99860 6.10958 6.27602 6.34628 6.45613 6.49060 6.55072 6.69063 6.73498 7.04009 7.10818 7.35876 7.38101 7.57590 7.79238 8.16046 8.49417 8.96564 9.55122 11.06082 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024173 B = 0.002825 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.028692 B = 9910.174395 C = 9980.873983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.097 4.097 3 C -0.154 4.154 4 C -0.065 4.065 5 C -0.136 4.136 6 C -0.162 4.162 7 C -0.037 4.037 8 H 0.105 0.895 9 C 0.527 3.473 10 O -0.540 6.540 11 N -0.602 5.602 12 C 0.129 3.871 13 C 0.045 3.955 14 H 0.111 0.889 15 C -0.143 4.143 16 C -0.142 4.142 17 C 0.044 3.956 18 H 0.103 0.897 19 C 0.119 3.881 20 N -0.503 5.503 21 C 0.061 3.939 22 C -0.007 4.007 23 C -0.521 4.521 24 H 0.070 0.930 25 C 0.068 3.932 26 N -0.903 5.903 27 Si 0.879 3.121 28 H -0.278 1.278 29 H -0.288 1.288 30 H -0.263 1.263 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.030 0.970 48 H 0.070 0.930 49 H 0.025 0.975 50 H 0.009 0.991 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.640 23.612 -13.603 27.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.097 4.097 3 C -0.172 4.172 4 C -0.101 4.101 5 C -0.154 4.154 6 C -0.180 4.180 7 C -0.058 4.058 8 H 0.123 0.877 9 C 0.314 3.686 10 O -0.417 6.417 11 N -0.335 5.335 12 C 0.007 3.993 13 C -0.064 4.064 14 H 0.129 0.871 15 C -0.182 4.182 16 C -0.181 4.181 17 C -0.066 4.066 18 H 0.121 0.879 19 C -0.004 4.004 20 N -0.226 5.226 21 C -0.066 4.066 22 C -0.045 4.045 23 C -0.559 4.559 24 H 0.089 0.911 25 C -0.133 4.133 26 N -0.542 5.542 27 Si 0.706 3.294 28 H -0.204 1.204 29 H -0.214 1.214 30 H -0.187 1.187 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.107 0.893 47 H 0.048 0.952 48 H 0.088 0.912 49 H 0.044 0.956 50 H 0.027 0.973 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.294 23.881 -12.846 27.214 hybrid contribution -0.644 -0.140 0.609 0.897 sum -2.937 23.741 -12.237 26.870 Atomic orbital electron populations 1.20880 0.91820 1.01913 1.02701 1.20351 0.95771 0.93020 1.00598 1.21885 0.95581 0.97431 1.02294 1.19265 0.92756 0.96362 1.01739 1.22252 0.99696 0.94436 0.99047 1.22079 0.94654 0.98818 1.02497 1.18902 0.95287 0.96524 0.95061 0.87699 1.20284 0.77590 0.80716 0.89993 1.90672 1.45501 1.59328 1.46232 1.48542 1.56898 1.18627 1.09438 1.21823 1.02270 0.92574 0.82661 1.23497 0.89966 0.93963 0.98979 0.87074 1.22780 0.98518 1.01966 0.94944 1.22797 0.96748 1.01540 0.96997 1.23415 0.93629 0.95296 0.94272 0.87926 1.22486 0.98311 0.90378 0.89183 1.65447 1.46888 1.07864 1.02402 1.22222 0.99236 0.84247 1.00856 1.19584 0.96702 0.96883 0.91325 1.21046 1.48344 0.89521 0.97004 0.91139 1.24995 0.94677 0.94744 0.98912 1.69909 1.49970 1.07572 1.26752 0.86790 0.78648 0.80815 0.83166 1.20365 1.21390 1.18732 0.90791 0.91939 0.92268 0.87037 0.89549 0.90133 0.86735 0.86069 0.89250 0.90820 0.91582 0.91316 0.91946 0.91510 0.90477 0.89342 0.95167 0.91167 0.95649 0.97272 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.82 36.01 0.35 -0.72 16 2 C -0.10 -1.00 4.36 -101.08 -0.44 -1.44 16 3 C -0.15 -1.45 9.48 -36.05 -0.34 -1.80 16 4 C -0.06 -0.54 6.27 -29.80 -0.19 -0.72 16 5 C -0.14 -1.13 9.93 -36.08 -0.36 -1.49 16 6 C -0.16 -1.42 7.94 -36.08 -0.29 -1.71 16 7 C -0.04 -0.37 1.97 -94.84 -0.19 -0.56 16 8 H 0.11 0.90 7.46 -51.93 -0.39 0.52 16 9 C 0.53 6.85 7.05 -10.98 -0.08 6.77 16 10 O -0.54 -8.85 15.40 5.56 0.09 -8.77 16 11 N -0.60 -7.44 2.35 -169.99 -0.40 -7.84 16 12 C 0.13 1.80 5.95 -3.22 -0.02 1.78 16 13 C 0.05 0.68 3.43 -65.42 -0.22 0.46 16 14 H 0.11 1.86 6.04 -51.93 -0.31 1.54 16 15 C -0.14 -1.98 5.56 -25.25 -0.14 -2.12 16 16 C -0.14 -1.71 5.54 -25.26 -0.14 -1.85 16 17 C 0.04 0.53 3.63 -65.42 -0.24 0.29 16 18 H 0.10 1.15 8.09 -51.93 -0.42 0.73 16 19 C 0.12 1.22 4.41 -2.18 -0.01 1.21 16 20 N -0.50 -7.90 5.04 -212.78 -1.07 -8.97 16 21 C 0.06 1.17 4.78 -3.82 -0.02 1.15 16 22 C -0.01 -0.17 3.78 -27.88 -0.11 -0.28 16 23 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 24 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 25 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 26 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 27 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.47 7.94 -51.93 -0.41 0.06 16 33 H 0.06 0.49 8.03 -51.93 -0.42 0.08 16 34 H 0.11 0.90 7.88 -52.49 -0.41 0.49 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.11 0.75 8.06 -52.48 -0.42 0.33 16 38 H 0.12 0.86 6.09 -52.49 -0.32 0.55 16 39 H 0.09 1.30 7.11 -51.93 -0.37 0.93 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 0.91 7.86 -51.93 -0.41 0.50 16 42 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 43 H 0.06 0.67 7.83 -51.93 -0.41 0.26 16 44 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.09 0.68 4.93 -51.93 -0.26 0.43 16 47 H 0.03 0.58 7.00 -51.93 -0.36 0.21 16 48 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 49 H 0.03 0.61 7.20 -51.93 -0.37 0.23 16 50 H 0.01 0.21 5.86 -51.93 -0.30 -0.09 16 51 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -32.32 382.69 -10.91 -43.24 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -8.55 Total: 0.55 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -2.85 Total: -14.03 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.70 Total: -43.71 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.32 -10.91 -43.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.029 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds