Wall clock time and date at job start Tue Mar 31 2020 15:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.29710 * 118.49668 * 2 1 4 4 C 1.49905 * 122.80255 * 179.97438 * 3 2 1 5 5 C 1.49908 * 111.19306 * 19.58287 * 4 3 2 6 6 C 1.29826 * 122.83723 * 340.48157 * 5 4 3 7 7 C 1.49905 * 122.83883 * 359.95231 * 6 5 4 8 8 H 1.08997 * 109.13588 * 139.94755 * 7 6 5 9 9 C 1.50701 * 109.13650 * 259.13080 * 7 6 5 10 10 O 1.21280 * 120.00475 * 120.82252 * 9 7 6 11 11 N 1.34779 * 119.99703 * 300.81026 * 9 7 6 12 12 C 1.47150 * 120.68303 * 179.97438 * 11 9 7 13 13 C 1.53891 * 108.04211 * 132.64003 * 12 11 9 14 14 H 1.08995 * 112.12493 * 182.01637 * 13 12 11 15 15 C 1.54553 * 108.35565 * 306.39757 * 13 12 11 16 16 C 1.54263 * 104.93661 * 89.19902 * 15 13 12 17 17 C 1.54543 * 104.94206 * 359.97438 * 16 15 13 18 18 H 1.08996 * 112.20527 * 146.47364 * 17 16 15 19 19 C 1.49048 * 120.03512 * 358.76913 * 11 9 7 20 20 N 1.48725 * 107.17545 * 58.43857 * 13 12 11 21 21 C 1.46907 * 111.00366 * 166.86415 * 20 13 12 22 22 C 1.53004 * 109.46919 * 298.78614 * 21 20 13 23 23 C 1.50694 * 109.47127 * 185.40251 * 22 21 20 24 24 H 1.08007 * 120.00008 * 359.97438 * 23 22 21 25 25 C 1.37872 * 120.00263 * 180.02562 * 23 22 21 26 26 N 1.31513 * 120.00449 * 179.97438 * 25 23 22 27 27 Si 1.86808 * 119.99722 * 359.97438 * 25 23 22 28 28 H 1.48490 * 109.47054 * 90.00338 * 27 25 23 29 29 H 1.48502 * 109.46822 * 210.00026 * 27 25 23 30 30 H 1.48495 * 109.47159 * 329.99589 * 27 25 23 31 31 H 1.08994 * 109.46884 * 269.97358 * 1 2 3 32 32 H 1.09004 * 109.46910 * 29.97169 * 1 2 3 33 33 H 1.08999 * 109.46919 * 149.96752 * 1 2 3 34 34 H 1.08001 * 118.61138 * 359.97438 * 3 2 1 35 35 H 1.09001 * 109.13492 * 259.13849 * 4 3 2 36 36 H 1.09005 * 109.13474 * 140.02715 * 4 3 2 37 37 H 1.08005 * 118.58208 * 160.45771 * 5 4 3 38 38 H 1.08000 * 118.58143 * 179.97438 * 6 5 4 39 39 H 1.09006 * 109.75018 * 13.00362 * 12 11 9 40 40 H 1.09003 * 109.75092 * 252.27187 * 12 11 9 41 41 H 1.09003 * 110.34367 * 330.34114 * 15 13 12 42 42 H 1.08993 * 110.34961 * 208.06742 * 15 13 12 43 43 H 1.09002 * 110.34597 * 241.13188 * 16 15 13 44 44 H 1.09001 * 110.34326 * 118.86751 * 16 15 13 45 45 H 1.08998 * 108.52720 * 107.83183 * 19 11 9 46 46 H 1.09004 * 111.23693 * 346.95648 * 19 11 9 47 47 H 1.09001 * 109.46820 * 58.78159 * 21 20 13 48 48 H 1.08994 * 109.47032 * 178.78493 * 21 20 13 49 49 H 1.09003 * 109.46919 * 305.40094 * 22 21 20 50 50 H 1.09003 * 109.47157 * 65.39928 * 22 21 20 51 51 H 0.97000 * 120.00311 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1259 1.1399 0.0000 4 6 3.6207 1.2525 0.0006 5 6 4.2602 -0.0200 -0.4674 6 6 3.6400 -1.1606 -0.4686 7 6 2.2242 -1.3165 -0.0012 8 1 1.7030 -2.0067 -0.6644 9 6 2.2246 -1.8799 1.3965 10 8 1.7060 -1.2597 2.3006 11 7 2.8012 -3.0732 1.6419 12 6 2.8108 -3.6372 3.0010 13 6 2.3670 -5.1079 2.9098 14 1 2.3165 -5.5830 3.8895 15 6 1.0147 -5.1629 2.1636 16 6 1.3882 -5.2935 0.6726 17 6 2.9334 -5.3053 0.6485 18 1 3.3281 -5.9358 -0.1482 19 6 3.4145 -3.8488 0.5266 20 7 3.3183 -5.7980 1.9983 21 6 3.1700 -7.2568 2.0888 22 6 3.4786 -7.7131 3.5163 23 6 3.4565 -9.2186 3.5781 24 1 3.2432 -9.7926 2.6884 25 6 3.7074 -9.8633 4.7707 26 7 3.6877 -11.1772 4.8249 27 14 4.0756 -8.8706 6.3097 28 1 2.8073 -8.5744 7.0229 29 1 4.9730 -9.6508 7.1991 30 1 4.7393 -7.5975 5.9305 31 1 -0.3633 -0.0005 1.0276 32 1 -0.3633 0.8903 -0.5134 33 1 -0.3633 -0.8897 -0.5143 34 1 1.5394 2.0468 -0.0004 35 1 3.9621 1.4730 1.0120 36 1 3.9181 2.0662 -0.6611 37 1 5.2808 0.0135 -0.8191 38 1 4.1669 -2.0349 -0.8212 39 1 2.1190 -3.0824 3.6349 40 1 3.8172 -3.5813 3.4159 41 1 0.4503 -4.2460 2.3340 42 1 0.4382 -6.0294 2.4873 43 1 1.0073 -4.4408 0.1104 44 1 0.9952 -6.2243 0.2637 45 1 4.4986 -3.8086 0.6319 46 1 3.1227 -3.4445 -0.4427 47 1 2.1479 -7.5347 1.8315 48 1 3.8622 -7.7359 1.3965 49 1 4.4648 -7.3519 3.8080 50 1 2.7283 -7.3104 4.1967 51 1 3.8646 -11.6308 5.6638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277940552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:43 Heat of formation + Delta-G solvation = -6.216339 kcal Electronic energy + Delta-G solvation = -29698.808326 eV Core-core repulsion = 25983.800088 eV Total energy + Delta-G solvation = -3715.008238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.19637 -40.61779 -38.55875 -36.29451 -35.07287 -33.81821 -33.22823 -33.02431 -31.65298 -30.62065 -28.60229 -27.65658 -25.81202 -25.70585 -24.86830 -22.62245 -21.64690 -21.61816 -20.94015 -19.61743 -19.08215 -18.20148 -17.72903 -17.19136 -16.84303 -16.47617 -16.26941 -16.08191 -15.58552 -15.40874 -15.16553 -14.88475 -14.83072 -14.68852 -14.53578 -14.27038 -14.10291 -13.80051 -13.62247 -13.48758 -13.39865 -13.12191 -13.01825 -12.92318 -12.66528 -12.53018 -12.04996 -11.99101 -11.85825 -11.78106 -11.76388 -11.55200 -11.43312 -11.34211 -11.23084 -11.08440 -10.76094 -10.24070 -9.79710 -9.49571 -9.32098 -8.30613 -6.34058 1.06169 1.34212 1.34635 1.36692 1.48743 1.72689 2.06528 2.34782 2.92063 3.05265 3.52007 3.57971 3.69173 3.76407 3.89854 3.92401 3.93573 4.13267 4.20126 4.24577 4.28826 4.38175 4.44007 4.46883 4.50456 4.58066 4.60532 4.68257 4.69525 4.76411 4.79388 4.83441 4.87248 4.90423 4.91455 4.93805 4.98581 5.07166 5.09306 5.19351 5.22864 5.32211 5.34266 5.45384 5.48887 5.64253 5.83268 5.88217 5.93236 6.06028 6.10743 6.28297 6.45111 6.73841 7.18713 7.30676 8.85947 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024173 B = 0.002825 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.028692 B = 9910.174395 C = 9980.873983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.120 4.120 3 C -0.157 4.157 4 C -0.071 4.071 5 C -0.138 4.138 6 C -0.174 4.174 7 C -0.033 4.033 8 H 0.124 0.876 9 C 0.525 3.475 10 O -0.581 6.581 11 N -0.600 5.600 12 C 0.137 3.863 13 C 0.043 3.957 14 H 0.090 0.910 15 C -0.140 4.140 16 C -0.136 4.136 17 C 0.043 3.957 18 H 0.120 0.880 19 C 0.123 3.877 20 N -0.509 5.509 21 C 0.077 3.923 22 C 0.000 4.000 23 C -0.528 4.528 24 H 0.035 0.965 25 C 0.008 3.992 26 N -0.950 5.950 27 Si 0.946 3.054 28 H -0.269 1.269 29 H -0.284 1.284 30 H -0.248 1.248 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.124 0.876 47 H 0.024 0.976 48 H 0.066 0.934 49 H 0.021 0.979 50 H 0.013 0.987 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.875 26.020 -15.190 30.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.120 4.120 3 C -0.175 4.175 4 C -0.107 4.107 5 C -0.156 4.156 6 C -0.192 4.192 7 C -0.053 4.053 8 H 0.141 0.859 9 C 0.314 3.686 10 O -0.461 6.461 11 N -0.333 5.333 12 C 0.013 3.987 13 C -0.066 4.066 14 H 0.108 0.892 15 C -0.179 4.179 16 C -0.175 4.175 17 C -0.066 4.066 18 H 0.138 0.862 19 C 0.001 3.999 20 N -0.231 5.231 21 C -0.051 4.051 22 C -0.038 4.038 23 C -0.566 4.566 24 H 0.053 0.947 25 C -0.189 4.189 26 N -0.591 5.591 27 Si 0.770 3.230 28 H -0.194 1.194 29 H -0.210 1.210 30 H -0.171 1.171 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.138 0.862 35 H 0.098 0.902 36 H 0.120 0.880 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.102 0.898 46 H 0.141 0.859 47 H 0.043 0.957 48 H 0.084 0.916 49 H 0.039 0.961 50 H 0.031 0.969 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.524 26.300 -14.469 30.056 hybrid contribution -0.905 -0.872 1.056 1.642 sum -2.429 25.428 -13.412 28.851 Atomic orbital electron populations 1.20863 0.91602 1.03063 1.01581 1.20558 0.96264 0.93526 1.01694 1.22182 0.96527 0.97675 1.01078 1.19369 0.92019 0.97461 1.01881 1.22523 1.00584 0.94196 0.98298 1.22231 0.93972 0.99860 1.03157 1.18917 0.96654 0.96649 0.93115 0.85881 1.20875 0.76497 0.80306 0.90920 1.90655 1.47201 1.60404 1.47823 1.48596 1.56734 1.18739 1.09195 1.21587 1.01627 0.91566 0.83876 1.23437 0.90683 0.94410 0.98090 0.89185 1.22719 0.97634 1.01227 0.96327 1.22773 0.96724 1.02425 0.95602 1.23601 0.93729 0.96703 0.92568 0.86236 1.22674 0.98590 0.88700 0.89904 1.65395 1.47447 1.05473 1.04797 1.21864 0.98655 0.86681 0.97900 1.19450 0.96434 0.93593 0.94329 1.21398 1.47455 0.92016 0.95775 0.94699 1.25928 0.94640 0.95749 1.02614 1.70054 1.51638 1.09518 1.27863 0.85715 0.78888 0.79649 0.78765 1.19418 1.21002 1.17115 0.92967 0.90507 0.91513 0.86186 0.90246 0.88020 0.84736 0.84089 0.90273 0.91225 0.91637 0.92808 0.89835 0.91668 0.89775 0.85869 0.95730 0.91551 0.96108 0.96909 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 9.82 71.24 0.70 -1.26 16 2 C -0.12 -2.25 4.36 -15.40 -0.07 -2.31 16 3 C -0.16 -2.66 9.48 26.72 0.25 -2.41 16 4 C -0.07 -1.00 6.27 28.61 0.18 -0.82 16 5 C -0.14 -1.84 9.93 26.61 0.26 -1.58 16 6 C -0.17 -2.43 7.94 26.61 0.21 -2.22 16 7 C -0.03 -0.57 1.97 -13.53 -0.03 -0.60 16 8 H 0.12 1.64 7.46 -2.39 -0.02 1.63 16 9 C 0.52 12.71 7.05 87.66 0.62 13.33 16 10 O -0.58 -18.79 15.40 -3.03 -0.05 -18.84 16 11 N -0.60 -13.56 2.35 -810.11 -1.90 -15.46 16 12 C 0.14 3.71 5.95 86.56 0.52 4.22 16 13 C 0.04 1.28 3.43 45.39 0.16 1.44 16 14 H 0.09 3.03 6.04 -2.39 -0.01 3.01 16 15 C -0.14 -3.76 5.56 31.55 0.18 -3.58 16 16 C -0.14 -2.96 5.54 31.55 0.17 -2.79 16 17 C 0.04 0.92 3.63 45.37 0.16 1.09 16 18 H 0.12 2.24 8.09 -2.39 -0.02 2.22 16 19 C 0.12 2.08 4.41 86.18 0.38 2.46 16 20 N -0.51 -15.23 5.04 -827.10 -4.17 -19.39 16 21 C 0.08 2.88 4.78 86.30 0.41 3.30 16 22 C 0.00 -0.02 3.78 29.85 0.11 0.09 16 23 C -0.53 -30.19 9.66 25.60 0.25 -29.95 16 24 H 0.03 2.18 7.99 -2.91 -0.02 2.15 16 25 C 0.01 0.45 5.47 84.65 0.46 0.91 16 26 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 27 Si 0.95 44.75 27.47 68.60 1.88 46.64 16 28 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 29 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 30 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.04 7.94 -2.38 -0.02 1.02 16 33 H 0.07 1.00 8.03 -2.39 -0.02 0.98 16 34 H 0.12 1.73 7.88 -2.91 -0.02 1.71 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.13 1.23 8.06 -2.91 -0.02 1.21 16 38 H 0.14 1.34 6.09 -2.91 -0.02 1.32 16 39 H 0.08 2.32 7.11 -2.38 -0.02 2.30 16 40 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 1.76 7.86 -2.39 -0.02 1.74 16 42 H 0.05 1.59 8.11 -2.39 -0.02 1.57 16 43 H 0.08 1.49 7.83 -2.39 -0.02 1.47 16 44 H 0.06 1.46 8.07 -2.39 -0.02 1.44 16 45 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.12 1.29 4.93 -2.38 -0.01 1.28 16 47 H 0.02 0.94 7.00 -2.39 -0.02 0.92 16 48 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 49 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 50 H 0.01 0.58 5.86 -2.39 -0.01 0.57 16 51 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -71.90 382.69 1.85 -70.05 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.85 Total: 17.01 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: 4.93 Total: -20.68 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -5.77 Total: -94.18 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.05 Total: -18.84 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.64 kcal Total: -71.90 1.85 -70.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.838 kcal (2) G-P(sol) polarization free energy of solvation -71.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds