Wall clock time and date at job start Tue Mar 31 2020 15:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.29817 * 118.58245 * 2 1 4 4 C 1.49909 * 122.84116 * 179.97438 * 3 2 1 5 5 C 1.49911 * 111.18883 * 340.47776 * 4 3 2 6 6 C 1.29794 * 122.84452 * 19.51866 * 5 4 3 7 7 C 1.49907 * 122.84649 * 0.02562 * 6 5 4 8 8 H 1.08996 * 109.09407 * 100.87876 * 7 6 5 9 9 C 1.50702 * 109.13584 * 220.03410 * 7 6 5 10 10 O 1.21282 * 119.99643 * 84.28891 * 9 7 6 11 11 N 1.34767 * 119.99867 * 264.28489 * 9 7 6 12 12 C 1.47375 * 125.60433 * 355.46773 * 11 9 7 13 13 C 1.54815 * 104.77666 * 154.53699 * 12 11 9 14 14 C 1.56202 * 102.31640 * 36.64486 * 13 12 11 15 15 H 1.08998 * 114.34392 * 203.65660 * 14 13 12 16 16 C 1.46848 * 125.60112 * 175.50495 * 11 9 7 17 17 H 1.09001 * 111.43931 * 306.38808 * 16 11 9 18 18 C 1.54145 * 109.32226 * 70.05398 * 16 11 9 19 19 C 1.54330 * 105.18865 * 116.43266 * 18 16 11 20 20 N 1.48375 * 108.19320 * 76.74882 * 14 13 12 21 21 C 1.46900 * 110.99869 * 92.75102 * 20 14 13 22 22 C 1.53001 * 109.47103 * 185.62038 * 21 20 14 23 23 C 1.50697 * 109.47225 * 179.97438 * 22 21 20 24 24 H 1.08007 * 119.99965 * 359.97438 * 23 22 21 25 25 C 1.37878 * 120.00096 * 180.27406 * 23 22 21 26 26 N 1.31512 * 120.00210 * 359.72262 * 25 23 22 27 27 Si 1.86800 * 119.99865 * 179.72704 * 25 23 22 28 28 H 1.48502 * 109.47447 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47503 * 119.99979 * 27 25 23 30 30 H 1.48510 * 109.46724 * 239.99772 * 27 25 23 31 31 H 1.09004 * 109.46943 * 270.01946 * 1 2 3 32 32 H 1.08996 * 109.47524 * 30.02117 * 1 2 3 33 33 H 1.09003 * 109.47358 * 150.02642 * 1 2 3 34 34 H 1.08007 * 118.57962 * 359.97438 * 3 2 1 35 35 H 1.09001 * 109.13966 * 100.91776 * 4 3 2 36 36 H 1.09001 * 109.13403 * 220.03921 * 4 3 2 37 37 H 1.08000 * 118.58374 * 199.54333 * 5 4 3 38 38 H 1.08004 * 118.57600 * 180.02562 * 6 5 4 39 39 H 1.08992 * 110.37820 * 273.36479 * 12 11 9 40 40 H 1.08995 * 110.37475 * 35.60505 * 12 11 9 41 41 H 1.09001 * 110.92935 * 155.16310 * 13 12 11 42 42 H 1.08996 * 110.93871 * 278.79953 * 13 12 11 43 43 H 1.09005 * 110.29453 * 357.50548 * 18 16 11 44 44 H 1.08993 * 110.38173 * 235.41136 * 18 16 11 45 45 H 1.09006 * 110.40862 * 216.81842 * 19 18 16 46 46 H 1.09004 * 110.40856 * 94.37747 * 19 18 16 47 47 H 1.08998 * 109.47303 * 65.61591 * 21 20 14 48 48 H 1.09001 * 109.46641 * 305.61294 * 21 20 14 49 49 H 1.08998 * 109.47406 * 59.99616 * 22 21 20 50 50 H 1.09002 * 109.47240 * 299.99405 * 22 21 20 51 51 H 0.96995 * 120.00525 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1281 1.1400 0.0000 4 6 3.6230 1.2513 0.0006 5 6 4.2610 -0.0222 0.4682 6 6 3.6401 -1.1619 0.4683 7 6 2.2244 -1.3166 0.0003 8 1 2.2256 -1.7235 -1.0109 9 6 1.5028 -2.2715 0.9161 10 8 1.0115 -1.8670 1.9485 11 7 1.4036 -3.5748 0.5877 12 6 1.8689 -4.1798 -0.6730 13 6 2.1413 -5.6629 -0.3223 14 6 0.9974 -5.9808 0.6928 15 1 1.2127 -6.8094 1.3674 16 6 0.8134 -4.6253 1.4271 17 1 1.2649 -4.6433 2.4191 18 6 -0.7121 -4.4186 1.5053 19 6 -1.3242 -5.6689 0.8389 20 7 -0.2612 -6.1662 -0.0707 21 6 -0.4721 -7.5816 -0.4025 22 6 -1.6998 -7.7164 -1.3055 23 6 -1.9158 -9.1683 -1.6463 24 1 -1.2442 -9.9199 -1.2580 25 6 -2.9670 -9.5368 -2.4588 26 7 -3.7845 -8.6217 -2.9320 27 14 -3.2302 -11.3358 -2.8875 28 1 -2.1808 -12.1589 -2.2344 29 1 -4.5680 -11.7681 -2.4094 30 1 -3.1505 -11.5105 -4.3601 31 1 -0.3633 0.0003 1.0277 32 1 -0.3634 0.8897 -0.5141 33 1 -0.3634 -0.8902 -0.5134 34 1 1.5424 2.0474 -0.0004 35 1 3.9654 1.4721 -1.0105 36 1 3.9205 2.0642 0.6630 37 1 5.2814 0.0102 0.8206 38 1 4.1662 -2.0368 0.8208 39 1 1.0954 -4.1064 -1.4373 40 1 2.7838 -3.6941 -1.0120 41 1 2.0650 -6.2929 -1.2085 42 1 3.1156 -5.7783 0.1526 43 1 -1.0004 -3.5199 0.9599 44 1 -1.0329 -4.3486 2.5446 45 1 -2.2150 -5.3994 0.2713 46 1 -1.5642 -6.4211 1.5904 47 1 -0.6310 -8.1498 0.5140 48 1 0.4050 -7.9675 -0.9219 49 1 -1.5410 -7.1481 -2.2220 50 1 -2.5770 -7.3304 -0.7861 51 1 -4.5243 -8.8809 -3.5033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277940714.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:35 Heat of formation + Delta-G solvation = 1.855530 kcal Electronic energy + Delta-G solvation = -29018.431044 eV Core-core repulsion = 25303.772829 eV Total energy + Delta-G solvation = -3714.658215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.87987 -39.41764 -37.58386 -35.58264 -33.33605 -33.17281 -31.95463 -31.67675 -30.51841 -28.21209 -27.40400 -27.09345 -24.74394 -24.15648 -22.88526 -21.72691 -20.82594 -20.40875 -19.79066 -19.05918 -17.39679 -16.72538 -16.39181 -16.01614 -15.85921 -15.24802 -15.01492 -14.74672 -14.53079 -14.30577 -14.17433 -14.15375 -13.52994 -13.42484 -13.33462 -13.10347 -12.72266 -12.46780 -12.32657 -12.27437 -12.05171 -11.94872 -11.60356 -11.45855 -11.28690 -11.20606 -10.99213 -10.85619 -10.81378 -10.70192 -10.64747 -10.50300 -10.01635 -9.86937 -9.58547 -9.40412 -9.14402 -8.76230 -8.57641 -8.36914 -7.99340 -6.02081 -4.04759 1.79793 2.05697 2.63126 3.00942 3.29077 3.36772 3.40180 4.20247 4.31152 4.35277 4.43214 4.52998 4.64941 4.74609 4.80269 4.98252 5.01128 5.04427 5.09363 5.23691 5.32986 5.34027 5.36331 5.41881 5.43719 5.47305 5.52962 5.58284 5.63954 5.68621 5.79743 5.87767 5.93222 5.97208 6.02550 6.06562 6.11521 6.15899 6.21749 6.38679 6.39746 6.47122 6.50320 6.55362 6.72796 6.90690 7.31551 7.40776 7.54877 7.72417 7.84901 8.04166 8.17031 8.40030 9.02817 9.59246 11.09224 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022908 B = 0.002453 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.977640 B =11412.012356 C =11580.078557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.096 4.096 3 C -0.163 4.163 4 C -0.062 4.062 5 C -0.142 4.142 6 C -0.145 4.145 7 C -0.035 4.035 8 H 0.108 0.892 9 C 0.541 3.459 10 O -0.534 6.534 11 N -0.605 5.605 12 C 0.107 3.893 13 C -0.116 4.116 14 C 0.047 3.953 15 H 0.079 0.921 16 C 0.138 3.862 17 H 0.082 0.918 18 C -0.127 4.127 19 C 0.038 3.962 20 N -0.500 5.500 21 C 0.052 3.948 22 C 0.031 3.969 23 C -0.522 4.522 24 H 0.054 0.946 25 C 0.058 3.942 26 N -0.892 5.892 27 Si 0.891 3.109 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.284 1.284 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.043 0.957 47 H 0.023 0.977 48 H 0.062 0.938 49 H 0.024 0.976 50 H 0.015 0.985 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.938 17.178 6.174 24.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.096 4.096 3 C -0.181 4.181 4 C -0.098 4.098 5 C -0.161 4.161 6 C -0.164 4.164 7 C -0.056 4.056 8 H 0.125 0.875 9 C 0.329 3.671 10 O -0.410 6.410 11 N -0.339 5.339 12 C -0.016 4.016 13 C -0.154 4.154 14 C -0.062 4.062 15 H 0.097 0.903 16 C 0.034 3.966 17 H 0.100 0.900 18 C -0.166 4.166 19 C -0.090 4.090 20 N -0.224 5.224 21 C -0.075 4.075 22 C -0.007 4.007 23 C -0.561 4.561 24 H 0.072 0.928 25 C -0.143 4.143 26 N -0.532 5.532 27 Si 0.719 3.281 28 H -0.198 1.198 29 H -0.210 1.210 30 H -0.210 1.210 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.104 0.896 46 H 0.061 0.939 47 H 0.041 0.959 48 H 0.080 0.920 49 H 0.042 0.958 50 H 0.034 0.966 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.520 17.777 6.126 24.380 hybrid contribution -0.298 -1.662 0.428 1.742 sum 15.222 16.115 6.554 23.116 Atomic orbital electron populations 1.20923 0.91570 1.02146 1.02974 1.20503 0.96028 0.92869 1.00245 1.21911 0.95635 0.97358 1.03198 1.19244 0.92611 0.96356 1.01582 1.22161 0.99884 0.94174 0.99833 1.21729 0.93974 0.98701 1.01976 1.18894 0.93131 0.93732 0.99792 0.87454 1.19913 0.79743 0.80820 0.86586 1.90684 1.47709 1.76393 1.26224 1.48511 1.59760 1.06558 1.19078 1.22315 0.99328 0.93210 0.86714 1.22832 0.96986 0.95435 1.00154 1.23872 0.93174 0.94917 0.94280 0.90310 1.22168 0.93828 0.86729 0.93855 0.90027 1.22645 0.94060 0.99091 1.00805 1.23071 0.96231 0.95094 0.94618 1.65521 1.00016 1.20869 1.36002 1.22517 1.01503 0.84631 0.98822 1.19030 0.90782 0.96478 0.94389 1.21220 1.12036 0.92853 1.29952 0.92785 1.24993 0.96011 0.97326 0.95987 1.69976 1.16413 1.32718 1.34047 0.86556 0.78010 0.85360 0.78168 1.19792 1.21046 1.20985 0.90475 0.91860 0.92074 0.86839 0.89560 0.90132 0.86799 0.86952 0.90008 0.91122 0.88979 0.91175 0.90813 0.91278 0.89631 0.93882 0.95883 0.91957 0.95787 0.96638 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 8.72 36.01 0.31 -1.03 16 2 C -0.10 -1.07 5.22 -101.10 -0.53 -1.60 16 3 C -0.16 -1.55 9.49 -36.07 -0.34 -1.89 16 4 C -0.06 -0.47 6.27 -29.80 -0.19 -0.66 16 5 C -0.14 -1.21 9.92 -36.07 -0.36 -1.56 16 6 C -0.15 -1.43 9.13 -36.07 -0.33 -1.76 16 7 C -0.03 -0.38 2.45 -94.83 -0.23 -0.62 16 8 H 0.11 1.06 6.62 -51.93 -0.34 0.72 16 9 C 0.54 7.32 5.68 -10.99 -0.06 7.26 16 10 O -0.53 -8.93 15.57 5.56 0.09 -8.85 16 11 N -0.61 -7.72 2.87 -162.01 -0.47 -8.19 16 12 C 0.11 1.19 6.21 -2.61 -0.02 1.17 16 13 C -0.12 -1.31 6.69 -24.06 -0.16 -1.47 16 14 C 0.05 0.64 3.40 -63.98 -0.22 0.42 16 15 H 0.08 1.03 8.02 -51.93 -0.42 0.61 16 16 C 0.14 1.86 3.69 -65.95 -0.24 1.62 16 17 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 18 C -0.13 -1.85 6.39 -25.44 -0.16 -2.01 16 19 C 0.04 0.62 5.74 -2.25 -0.01 0.61 16 20 N -0.50 -8.43 4.75 -219.81 -1.04 -9.47 16 21 C 0.05 1.04 4.76 -3.82 -0.02 1.02 16 22 C 0.03 0.77 5.03 -27.88 -0.14 0.63 16 23 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 24 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 25 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 26 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 27 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 28 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 29 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 30 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 31 H 0.08 0.98 7.59 -51.93 -0.39 0.59 16 32 H 0.06 0.58 7.95 -51.93 -0.41 0.17 16 33 H 0.06 0.72 7.90 -51.93 -0.41 0.31 16 34 H 0.11 0.93 7.88 -52.48 -0.41 0.51 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.11 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.11 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.62 7.14 -51.93 -0.37 0.25 16 41 H 0.09 1.11 8.05 -51.93 -0.42 0.69 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 1.16 7.74 -51.93 -0.40 0.76 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 1.55 7.76 -51.93 -0.40 1.14 16 46 H 0.04 0.71 7.82 -51.93 -0.41 0.30 16 47 H 0.02 0.46 7.88 -51.93 -0.41 0.05 16 48 H 0.06 1.21 8.04 -51.93 -0.42 0.79 16 49 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.02 0.41 7.25 -51.93 -0.38 0.04 16 51 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 397.49 15.07 5.99 5.99 Total: -1.00 -31.69 397.49 -11.76 -43.46 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.94 Total: -0.37 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -3.11 Total: -13.09 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: -0.77 Total: -43.52 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.69 -11.76 -43.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940714.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.314 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds