Wall clock time and date at job start Tue Mar 31 2020 15:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.29817 * 118.58245 * 2 1 4 4 C 1.49909 * 122.84116 * 179.97438 * 3 2 1 5 5 C 1.49911 * 111.18883 * 340.47776 * 4 3 2 6 6 C 1.29794 * 122.84452 * 19.51866 * 5 4 3 7 7 C 1.49907 * 122.84649 * 0.02562 * 6 5 4 8 8 H 1.08996 * 109.09407 * 100.87876 * 7 6 5 9 9 C 1.50702 * 109.13584 * 220.03410 * 7 6 5 10 10 O 1.21282 * 119.99643 * 84.28891 * 9 7 6 11 11 N 1.34767 * 119.99867 * 264.28489 * 9 7 6 12 12 C 1.47375 * 125.60433 * 355.46773 * 11 9 7 13 13 C 1.54815 * 104.77666 * 154.53699 * 12 11 9 14 14 C 1.56202 * 102.31640 * 36.64486 * 13 12 11 15 15 H 1.08998 * 114.34392 * 203.65660 * 14 13 12 16 16 C 1.46848 * 125.60112 * 175.50495 * 11 9 7 17 17 H 1.09001 * 111.43931 * 306.38808 * 16 11 9 18 18 C 1.54145 * 109.32226 * 70.05398 * 16 11 9 19 19 C 1.54330 * 105.18865 * 116.43266 * 18 16 11 20 20 N 1.48375 * 108.19320 * 76.74882 * 14 13 12 21 21 C 1.46900 * 110.99869 * 92.75102 * 20 14 13 22 22 C 1.53001 * 109.47103 * 185.62038 * 21 20 14 23 23 C 1.50697 * 109.47225 * 179.97438 * 22 21 20 24 24 H 1.08007 * 119.99965 * 359.97438 * 23 22 21 25 25 C 1.37878 * 120.00096 * 180.27406 * 23 22 21 26 26 N 1.31512 * 120.00210 * 359.72262 * 25 23 22 27 27 Si 1.86800 * 119.99865 * 179.72704 * 25 23 22 28 28 H 1.48502 * 109.47447 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47503 * 119.99979 * 27 25 23 30 30 H 1.48510 * 109.46724 * 239.99772 * 27 25 23 31 31 H 1.09004 * 109.46943 * 270.01946 * 1 2 3 32 32 H 1.08996 * 109.47524 * 30.02117 * 1 2 3 33 33 H 1.09003 * 109.47358 * 150.02642 * 1 2 3 34 34 H 1.08007 * 118.57962 * 359.97438 * 3 2 1 35 35 H 1.09001 * 109.13966 * 100.91776 * 4 3 2 36 36 H 1.09001 * 109.13403 * 220.03921 * 4 3 2 37 37 H 1.08000 * 118.58374 * 199.54333 * 5 4 3 38 38 H 1.08004 * 118.57600 * 180.02562 * 6 5 4 39 39 H 1.08992 * 110.37820 * 273.36479 * 12 11 9 40 40 H 1.08995 * 110.37475 * 35.60505 * 12 11 9 41 41 H 1.09001 * 110.92935 * 155.16310 * 13 12 11 42 42 H 1.08996 * 110.93871 * 278.79953 * 13 12 11 43 43 H 1.09005 * 110.29453 * 357.50548 * 18 16 11 44 44 H 1.08993 * 110.38173 * 235.41136 * 18 16 11 45 45 H 1.09006 * 110.40862 * 216.81842 * 19 18 16 46 46 H 1.09004 * 110.40856 * 94.37747 * 19 18 16 47 47 H 1.08998 * 109.47303 * 65.61591 * 21 20 14 48 48 H 1.09001 * 109.46641 * 305.61294 * 21 20 14 49 49 H 1.08998 * 109.47406 * 59.99616 * 22 21 20 50 50 H 1.09002 * 109.47240 * 299.99405 * 22 21 20 51 51 H 0.96995 * 120.00525 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1281 1.1400 0.0000 4 6 3.6230 1.2513 0.0006 5 6 4.2610 -0.0222 0.4682 6 6 3.6401 -1.1619 0.4683 7 6 2.2244 -1.3166 0.0003 8 1 2.2256 -1.7235 -1.0109 9 6 1.5028 -2.2715 0.9161 10 8 1.0115 -1.8670 1.9485 11 7 1.4036 -3.5748 0.5877 12 6 1.8689 -4.1798 -0.6730 13 6 2.1413 -5.6629 -0.3223 14 6 0.9974 -5.9808 0.6928 15 1 1.2127 -6.8094 1.3674 16 6 0.8134 -4.6253 1.4271 17 1 1.2649 -4.6433 2.4191 18 6 -0.7121 -4.4186 1.5053 19 6 -1.3242 -5.6689 0.8389 20 7 -0.2612 -6.1662 -0.0707 21 6 -0.4721 -7.5816 -0.4025 22 6 -1.6998 -7.7164 -1.3055 23 6 -1.9158 -9.1683 -1.6463 24 1 -1.2442 -9.9199 -1.2580 25 6 -2.9670 -9.5368 -2.4588 26 7 -3.7845 -8.6217 -2.9320 27 14 -3.2302 -11.3358 -2.8875 28 1 -2.1808 -12.1589 -2.2344 29 1 -4.5680 -11.7681 -2.4094 30 1 -3.1505 -11.5105 -4.3601 31 1 -0.3633 0.0003 1.0277 32 1 -0.3634 0.8897 -0.5141 33 1 -0.3634 -0.8902 -0.5134 34 1 1.5424 2.0474 -0.0004 35 1 3.9654 1.4721 -1.0105 36 1 3.9205 2.0642 0.6630 37 1 5.2814 0.0102 0.8206 38 1 4.1662 -2.0368 0.8208 39 1 1.0954 -4.1064 -1.4373 40 1 2.7838 -3.6941 -1.0120 41 1 2.0650 -6.2929 -1.2085 42 1 3.1156 -5.7783 0.1526 43 1 -1.0004 -3.5199 0.9599 44 1 -1.0329 -4.3486 2.5446 45 1 -2.2150 -5.3994 0.2713 46 1 -1.5642 -6.4211 1.5904 47 1 -0.6310 -8.1498 0.5140 48 1 0.4050 -7.9675 -0.9219 49 1 -1.5410 -7.1481 -2.2220 50 1 -2.5770 -7.3304 -0.7861 51 1 -4.5243 -8.8809 -3.5033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277940714.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:34 Heat of formation + Delta-G solvation = -15.731237 kcal Electronic energy + Delta-G solvation = -29019.193664 eV Core-core repulsion = 25303.772829 eV Total energy + Delta-G solvation = -3715.420835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.92096 -40.42688 -38.55959 -36.88981 -35.23451 -33.91538 -33.40665 -32.64652 -31.72290 -29.75405 -28.52410 -28.00187 -26.18917 -25.39189 -23.86135 -23.28374 -21.85282 -21.46653 -21.11402 -20.10539 -18.54509 -18.38800 -17.53388 -17.02359 -16.58393 -16.54817 -16.32747 -16.20250 -15.76955 -15.58767 -15.40231 -14.99117 -14.64348 -14.47806 -14.26206 -14.22450 -14.09046 -13.74403 -13.52989 -13.44190 -13.12884 -13.10471 -13.01014 -12.82683 -12.59265 -12.45541 -12.40434 -12.22542 -12.11171 -12.00811 -11.82726 -11.69999 -11.35067 -11.30954 -11.18440 -11.00814 -10.55398 -10.32839 -9.68044 -9.47446 -9.38999 -8.19573 -6.30755 1.08404 1.30372 1.40577 1.40771 1.53889 1.64225 2.03491 2.40392 3.04376 3.14282 3.25255 3.52867 3.56766 3.65266 3.86482 3.91182 4.07158 4.13102 4.16583 4.20225 4.29181 4.30287 4.40581 4.42719 4.49474 4.54884 4.58033 4.60930 4.72810 4.74593 4.76238 4.89632 4.90859 4.92935 4.94812 4.99673 5.02487 5.06485 5.15363 5.16101 5.21073 5.29533 5.38060 5.47714 5.63008 5.79648 5.80164 5.84883 5.98584 5.99030 6.14317 6.31180 6.53737 6.87487 7.13829 7.38702 8.92712 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022908 B = 0.002453 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.977640 B =11412.012356 C =11580.078557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.130 4.130 3 C -0.150 4.150 4 C -0.067 4.067 5 C -0.133 4.133 6 C -0.169 4.169 7 C -0.029 4.029 8 H 0.114 0.886 9 C 0.540 3.460 10 O -0.572 6.572 11 N -0.605 5.605 12 C 0.107 3.893 13 C -0.108 4.108 14 C 0.047 3.953 15 H 0.093 0.907 16 C 0.140 3.860 17 H 0.091 0.909 18 C -0.117 4.117 19 C 0.040 3.960 20 N -0.509 5.509 21 C 0.072 3.928 22 C 0.039 3.961 23 C -0.540 4.540 24 H 0.062 0.938 25 C 0.000 4.000 26 N -0.933 5.933 27 Si 0.965 3.035 28 H -0.260 1.260 29 H -0.281 1.281 30 H -0.278 1.278 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.057 0.943 46 H 0.043 0.957 47 H 0.025 0.975 48 H 0.073 0.927 49 H -0.008 1.008 50 H -0.014 1.014 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.923 17.209 6.314 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.130 4.130 3 C -0.168 4.168 4 C -0.103 4.103 5 C -0.151 4.151 6 C -0.187 4.187 7 C -0.049 4.049 8 H 0.132 0.868 9 C 0.329 3.671 10 O -0.451 6.451 11 N -0.338 5.338 12 C -0.015 4.015 13 C -0.146 4.146 14 C -0.062 4.062 15 H 0.111 0.889 16 C 0.035 3.965 17 H 0.109 0.891 18 C -0.156 4.156 19 C -0.088 4.088 20 N -0.234 5.234 21 C -0.056 4.056 22 C 0.002 3.998 23 C -0.578 4.578 24 H 0.081 0.919 25 C -0.198 4.198 26 N -0.573 5.573 27 Si 0.790 3.210 28 H -0.183 1.183 29 H -0.207 1.207 30 H -0.204 1.204 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.143 0.857 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.154 0.846 38 H 0.136 0.864 39 H 0.081 0.919 40 H 0.120 0.880 41 H 0.105 0.895 42 H 0.118 0.882 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.043 0.957 48 H 0.091 0.909 49 H 0.010 0.990 50 H 0.004 0.996 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.530 17.803 6.258 26.447 hybrid contribution -1.248 -1.543 0.396 2.023 sum 17.282 16.260 6.654 24.644 Atomic orbital electron populations 1.20837 0.92486 1.02199 1.01514 1.20581 0.95699 0.93707 1.03011 1.22251 0.97096 0.97121 1.00363 1.19419 0.91058 0.96673 1.03181 1.22477 1.00764 0.93811 0.98032 1.21772 0.93303 0.99749 1.03901 1.18866 0.93717 0.92954 0.99381 0.86838 1.20458 0.79131 0.81067 0.86409 1.90657 1.49392 1.77044 1.28031 1.48582 1.59338 1.06443 1.19406 1.22389 1.00020 0.93562 0.85513 1.22857 0.97317 0.95016 0.99428 1.23990 0.92023 0.95264 0.94896 0.88924 1.22140 0.92711 0.87051 0.94567 0.89106 1.22528 0.95301 0.97135 1.00673 1.22979 0.95572 0.96019 0.94258 1.65435 1.01736 1.18764 1.37434 1.22129 0.99154 0.86595 0.97724 1.18848 0.92238 0.95019 0.93739 1.21661 1.12231 0.94021 1.29903 0.91946 1.25968 0.95705 1.02288 0.95859 1.70120 1.17110 1.35253 1.34856 0.85399 0.78177 0.79425 0.78024 1.18336 1.20675 1.20406 0.92715 0.90162 0.93662 0.85679 0.87540 0.88220 0.84574 0.86400 0.91927 0.88028 0.89475 0.88226 0.92547 0.90439 0.92405 0.93825 0.95720 0.90898 0.98986 0.99565 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.65 8.72 71.24 0.62 -2.03 16 2 C -0.13 -2.81 5.22 -15.51 -0.08 -2.89 16 3 C -0.15 -2.56 9.49 26.62 0.25 -2.31 16 4 C -0.07 -0.81 6.27 28.61 0.18 -0.63 16 5 C -0.13 -1.84 9.92 26.64 0.26 -1.58 16 6 C -0.17 -2.97 9.13 26.64 0.24 -2.72 16 7 C -0.03 -0.61 2.45 -13.52 -0.03 -0.64 16 8 H 0.11 2.13 6.62 -2.39 -0.02 2.12 16 9 C 0.54 14.57 5.68 87.66 0.50 15.07 16 10 O -0.57 -19.54 15.57 -3.04 -0.05 -19.59 16 11 N -0.61 -15.12 2.87 -784.87 -2.25 -17.37 16 12 C 0.11 2.25 6.21 86.83 0.54 2.79 16 13 C -0.11 -2.22 6.69 32.33 0.22 -2.00 16 14 C 0.05 1.22 3.40 46.52 0.16 1.38 16 15 H 0.09 2.20 8.02 -2.39 -0.02 2.18 16 16 C 0.14 3.68 3.69 46.09 0.17 3.85 16 17 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 18 C -0.12 -3.54 6.39 31.43 0.20 -3.34 16 19 C 0.04 1.38 5.74 86.45 0.50 1.88 16 20 N -0.51 -17.47 4.75 -849.36 -4.03 -21.50 16 21 C 0.07 2.88 4.76 86.30 0.41 3.29 16 22 C 0.04 2.06 5.03 29.85 0.15 2.21 16 23 C -0.54 -30.34 9.11 25.60 0.23 -30.11 16 24 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 25 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 26 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 27 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 28 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 29 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 30 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 31 H 0.05 1.48 7.59 -2.38 -0.02 1.47 16 32 H 0.08 1.49 7.95 -2.39 -0.02 1.48 16 33 H 0.04 1.15 7.90 -2.39 -0.02 1.13 16 34 H 0.13 1.78 7.88 -2.91 -0.02 1.76 16 35 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.12 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.10 1.53 7.14 -2.39 -0.02 1.51 16 41 H 0.09 1.94 8.05 -2.39 -0.02 1.92 16 42 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.06 1.89 7.74 -2.38 -0.02 1.87 16 44 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.06 2.28 7.76 -2.38 -0.02 2.26 16 46 H 0.04 1.49 7.82 -2.39 -0.02 1.47 16 47 H 0.02 0.98 7.88 -2.39 -0.02 0.96 16 48 H 0.07 2.77 8.04 -2.39 -0.02 2.75 16 49 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 50 H -0.01 -0.81 7.25 -2.39 -0.02 -0.83 16 51 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -70.96 397.49 1.85 -69.12 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.88 Total: 17.56 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 4.98 Total: -17.36 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -6.00 Total: -95.75 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.05 Total: -19.59 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -70.96 1.85 -69.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940714.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.387 kcal (2) G-P(sol) polarization free energy of solvation -70.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds