Wall clock time and date at job start Tue Mar 31 2020 15:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.29798 * 118.57088 * 2 1 4 4 C 1.49916 * 122.83932 * 180.02562 * 3 2 1 5 5 C 1.49900 * 111.19201 * 19.52800 * 4 3 2 6 6 C 1.29833 * 122.84198 * 340.47605 * 5 4 3 7 7 C 1.49909 * 118.58172 * 180.02562 * 2 1 3 8 8 H 1.08994 * 109.09283 * 40.04331 * 7 2 1 9 9 C 1.50704 * 109.12956 * 280.89613 * 7 2 1 10 10 O 1.21276 * 120.00225 * 358.31112 * 9 7 2 11 11 N 1.34779 * 119.99980 * 178.30732 * 9 7 2 12 12 C 1.46662 * 125.28460 * 0.02843 * 11 9 7 13 13 C 1.53524 * 107.03811 * 197.39803 * 12 11 9 14 14 H 1.09002 * 113.33895 * 211.20877 * 13 12 11 15 15 C 1.54773 * 109.68069 * 84.11880 * 13 12 11 16 16 C 1.54944 * 101.53175 * 212.77541 * 15 13 12 17 17 N 1.47766 * 104.86106 * 37.31753 * 16 15 13 18 18 C 1.46896 * 110.99567 * 214.30741 * 17 16 15 19 19 C 1.53001 * 109.47228 * 290.12589 * 18 17 16 20 20 C 1.50700 * 109.47082 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00522 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99813 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00022 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99982 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47300 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.47109 * 120.00157 * 24 22 20 27 27 H 1.48502 * 109.47630 * 240.00272 * 24 22 20 28 28 C 1.47667 * 108.81475 * 336.74082 * 17 16 15 29 29 H 1.09005 * 111.94849 * 236.63050 * 28 17 16 30 30 C 1.46492 * 125.29461 * 180.02562 * 11 9 7 31 31 H 1.08987 * 109.47006 * 269.97848 * 1 2 3 32 32 H 1.09001 * 109.46655 * 29.97901 * 1 2 3 33 33 H 1.09000 * 109.47014 * 149.97706 * 1 2 3 34 34 H 1.07998 * 118.57679 * 0.02562 * 3 2 1 35 35 H 1.09006 * 109.13668 * 259.08244 * 4 3 2 36 36 H 1.09008 * 109.08361 * 139.93671 * 4 3 2 37 37 H 1.08005 * 118.58617 * 160.45921 * 5 4 3 38 38 H 1.07997 * 118.58582 * 179.97438 * 6 5 4 39 39 H 1.08993 * 109.91840 * 78.05204 * 12 11 9 40 40 H 1.08999 * 109.91525 * 316.74174 * 12 11 9 41 41 H 1.09008 * 111.01714 * 94.70935 * 15 13 12 42 42 H 1.09000 * 111.01151 * 330.83751 * 15 13 12 43 43 H 1.08994 * 110.35811 * 278.46370 * 16 15 13 44 44 H 1.08998 * 110.35807 * 156.16255 * 16 15 13 45 45 H 1.08997 * 109.47465 * 50.12700 * 18 17 16 46 46 H 1.09004 * 109.47216 * 170.12746 * 18 17 16 47 47 H 1.09010 * 109.46923 * 300.00163 * 19 18 17 48 48 H 1.08995 * 109.47433 * 60.00209 * 19 18 17 49 49 H 0.97000 * 119.99879 * 179.97438 * 23 22 20 50 50 H 1.08997 * 109.71548 * 58.32796 * 30 11 9 51 51 H 1.09002 * 109.70922 * 297.78188 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1278 1.1399 0.0000 4 6 3.6228 1.2515 -0.0006 5 6 4.2611 -0.0216 -0.4683 6 6 3.6402 -1.1619 -0.4684 7 6 2.2243 -1.3164 -0.0006 8 1 1.7024 -2.0064 -0.6636 9 6 2.2242 -1.8795 1.3973 10 8 1.7192 -1.2518 2.3039 11 7 2.7852 -3.0807 1.6400 12 6 3.4262 -3.9349 0.6349 13 6 3.5191 -5.3446 1.2358 14 1 4.3856 -5.9065 0.8871 15 6 2.1853 -6.0965 1.0098 16 6 2.1108 -6.9833 2.2782 17 7 2.6552 -6.1400 3.3627 18 6 3.3915 -6.9513 4.3411 19 6 2.4073 -7.8193 5.1278 20 6 3.1627 -8.6512 6.1320 21 1 4.2371 -8.5688 6.2025 22 6 2.4818 -9.5168 6.9616 23 7 1.1733 -9.6169 6.8762 24 14 3.4181 -10.5485 8.2059 25 1 4.8697 -10.2529 8.1018 26 1 2.9441 -10.2234 9.5752 27 1 3.1848 -11.9889 7.9303 28 6 3.5267 -5.1057 2.7699 29 1 4.5346 -5.1361 3.1838 30 6 2.8497 -3.7359 2.9487 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.5420 2.0472 0.0004 35 1 3.9651 1.4724 1.0105 36 1 3.9193 2.0644 -0.6636 37 1 5.2815 0.0109 -0.8207 38 1 4.1662 -2.0367 -0.8209 39 1 4.4249 -3.5600 0.4113 40 1 2.8229 -3.9571 -0.2727 41 1 2.2287 -6.7072 0.1079 42 1 1.3468 -5.4013 0.9691 43 1 2.7199 -7.8782 2.1515 44 1 1.0768 -7.2543 2.4913 45 1 4.1040 -7.5909 3.8202 46 1 3.9266 -6.2954 5.0278 47 1 1.6948 -7.1796 5.6488 48 1 1.8722 -8.4753 4.4412 49 1 0.6943 -10.2261 7.4595 50 1 1.8422 -3.8720 3.3417 51 1 3.4328 -3.1246 3.6375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277940756.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:58 Heat of formation + Delta-G solvation = 0.300489 kcal Electronic energy + Delta-G solvation = -28718.647401 eV Core-core repulsion = 25003.921754 eV Total energy + Delta-G solvation = -3714.725647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.94914 -39.57963 -37.69743 -35.82829 -33.47716 -33.13613 -31.95315 -31.67673 -29.77415 -29.15379 -27.51516 -26.98365 -24.80373 -24.04544 -23.35421 -21.43527 -20.88192 -20.14316 -19.79602 -19.67268 -17.36817 -16.92172 -16.44554 -16.03132 -15.92573 -15.47546 -15.07307 -14.70830 -14.54057 -14.32400 -14.16871 -13.91541 -13.64771 -13.43081 -13.31541 -13.07096 -12.87565 -12.55938 -12.42553 -12.40370 -12.24912 -12.16574 -11.85196 -11.42885 -11.34049 -11.07131 -10.99339 -10.86458 -10.77283 -10.71357 -10.62580 -10.52186 -10.26164 -9.87871 -9.55246 -9.40023 -9.11850 -8.79733 -8.60507 -8.35074 -7.84867 -5.99976 -4.02587 1.71423 2.01957 2.64301 3.03066 3.30622 3.38178 3.41682 4.10863 4.22269 4.38869 4.41439 4.41833 4.52146 4.64974 4.76211 4.87262 4.93937 4.96454 5.09426 5.18211 5.23861 5.26431 5.33794 5.36136 5.36581 5.42233 5.49094 5.51087 5.57946 5.64749 5.74488 5.80847 5.82889 5.87159 5.97055 5.99287 6.10569 6.16208 6.28115 6.34206 6.38414 6.42423 6.43959 6.51601 6.73013 6.93880 7.41569 7.46581 7.48329 7.75144 7.88200 8.07427 8.13913 8.42304 9.05054 9.61207 11.11380 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024791 B = 0.002282 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.154620 B =12264.447915 C =12398.705369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.098 4.098 3 C -0.153 4.153 4 C -0.065 4.065 5 C -0.136 4.136 6 C -0.160 4.160 7 C -0.033 4.033 8 H 0.106 0.894 9 C 0.540 3.460 10 O -0.530 6.530 11 N -0.609 5.609 12 C 0.111 3.889 13 C -0.123 4.123 14 H 0.101 0.899 15 C -0.123 4.123 16 C 0.050 3.950 17 N -0.523 5.523 18 C 0.059 3.941 19 C 0.029 3.971 20 C -0.522 4.522 21 H 0.054 0.946 22 C 0.058 3.942 23 N -0.892 5.892 24 Si 0.891 3.109 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 C 0.066 3.934 29 H 0.085 0.915 30 C 0.120 3.880 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.081 0.919 45 H 0.022 0.978 46 H 0.060 0.940 47 H 0.024 0.976 48 H 0.016 0.984 49 H 0.260 0.740 50 H 0.086 0.914 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.776 18.047 -20.872 28.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.098 4.098 3 C -0.171 4.171 4 C -0.101 4.101 5 C -0.154 4.154 6 C -0.178 4.178 7 C -0.054 4.054 8 H 0.124 0.876 9 C 0.328 3.672 10 O -0.406 6.406 11 N -0.343 5.343 12 C -0.013 4.013 13 C -0.143 4.143 14 H 0.119 0.881 15 C -0.161 4.161 16 C -0.077 4.077 17 N -0.247 5.247 18 C -0.068 4.068 19 C -0.008 4.008 20 C -0.561 4.561 21 H 0.072 0.928 22 C -0.143 4.143 23 N -0.531 5.531 24 Si 0.719 3.281 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.211 1.211 28 C -0.044 4.044 29 H 0.103 0.897 30 C -0.003 4.003 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.131 0.869 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.099 0.901 45 H 0.041 0.959 46 H 0.079 0.921 47 H 0.043 0.957 48 H 0.034 0.966 49 H 0.070 0.930 50 H 0.104 0.896 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.899 18.590 -20.017 27.594 hybrid contribution 1.215 -1.226 0.334 1.758 sum 5.113 17.364 -19.683 26.741 Atomic orbital electron populations 1.20887 0.91682 1.01977 1.02850 1.20382 0.95861 0.92940 1.00665 1.21917 0.95545 0.97476 1.02205 1.19272 0.92797 0.96298 1.01783 1.22249 0.99645 0.94497 0.99036 1.21946 0.94691 0.98701 1.02462 1.18871 0.95313 0.96609 0.94639 0.87616 1.19947 0.77606 0.79516 0.90140 1.90712 1.45098 1.58602 1.46146 1.48117 1.57541 1.18325 1.10351 1.21877 0.97613 0.89809 0.91958 1.23197 0.99551 0.95172 0.96392 0.88120 1.22771 0.96289 0.98690 0.98370 1.23005 1.01337 0.94724 0.88643 1.63609 1.33747 1.13791 1.13534 1.22545 0.96399 0.94830 0.93038 1.19050 0.94089 0.93490 0.94169 1.21220 0.93538 1.22667 1.18645 0.92794 1.24998 0.94832 0.97124 0.97394 1.69981 1.06599 1.37502 1.39051 0.86550 0.80066 0.80082 0.81362 1.19802 1.20973 1.21053 1.23146 0.95982 0.92762 0.92540 0.89664 1.21845 1.02686 0.91807 0.83924 0.90667 0.91879 0.92182 0.86940 0.89460 0.90084 0.86786 0.86408 0.91590 0.90794 0.90882 0.90763 0.93250 0.90056 0.95928 0.92118 0.95730 0.96605 0.93046 0.89619 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.84 36.01 0.35 -0.75 16 2 C -0.10 -1.02 4.36 -101.11 -0.44 -1.46 16 3 C -0.15 -1.45 9.49 -36.07 -0.34 -1.80 16 4 C -0.07 -0.53 6.27 -29.80 -0.19 -0.72 16 5 C -0.14 -1.09 9.92 -36.08 -0.36 -1.45 16 6 C -0.16 -1.36 8.19 -36.08 -0.30 -1.66 16 7 C -0.03 -0.34 2.15 -94.83 -0.20 -0.54 16 8 H 0.11 0.90 7.76 -51.93 -0.40 0.50 16 9 C 0.54 7.30 7.15 -10.98 -0.08 7.23 16 10 O -0.53 -9.25 16.25 5.56 0.09 -9.16 16 11 N -0.61 -7.58 3.30 -172.72 -0.57 -8.15 16 12 C 0.11 1.02 4.62 -3.68 -0.02 1.00 16 13 C -0.12 -1.31 3.97 -88.22 -0.35 -1.66 16 14 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 15 C -0.12 -1.42 6.31 -24.77 -0.16 -1.57 16 16 C 0.05 0.78 5.82 -2.32 -0.01 0.77 16 17 N -0.52 -9.06 4.54 -222.10 -1.01 -10.07 16 18 C 0.06 1.20 4.59 -3.83 -0.02 1.18 16 19 C 0.03 0.76 5.03 -27.88 -0.14 0.62 16 20 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 21 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 24 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 C 0.07 0.91 3.61 -65.65 -0.24 0.67 16 29 H 0.09 1.15 7.64 -51.93 -0.40 0.76 16 30 C 0.12 1.75 6.49 -3.61 -0.02 1.72 16 31 H 0.07 0.84 8.14 -51.94 -0.42 0.41 16 32 H 0.06 0.48 7.94 -51.93 -0.41 0.07 16 33 H 0.06 0.51 8.03 -51.93 -0.42 0.09 16 34 H 0.11 0.91 7.88 -52.49 -0.41 0.50 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.11 0.69 8.06 -52.48 -0.42 0.27 16 38 H 0.12 0.79 6.30 -52.49 -0.33 0.46 16 39 H 0.07 0.51 6.99 -51.93 -0.36 0.15 16 40 H 0.07 0.56 7.42 -51.93 -0.39 0.17 16 41 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 43 H 0.05 0.79 7.60 -51.93 -0.39 0.40 16 44 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.02 0.45 7.83 -51.93 -0.41 0.04 16 46 H 0.06 1.24 7.99 -51.93 -0.42 0.82 16 47 H 0.02 0.69 8.14 -51.92 -0.42 0.27 16 48 H 0.02 0.43 7.52 -51.93 -0.39 0.04 16 49 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 50 H 0.09 1.47 7.86 -51.93 -0.41 1.06 16 51 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 396.55 15.07 5.98 5.98 Total: -1.00 -32.91 396.55 -11.61 -44.52 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -8.89 Total: -1.69 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -2.92 Total: -11.87 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -0.84 Total: -44.40 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.91 -11.61 -44.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940756.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.818 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds