Wall clock time and date at job start Tue Mar 31 2020 15:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.29798 * 118.57088 * 2 1 4 4 C 1.49916 * 122.83932 * 180.02562 * 3 2 1 5 5 C 1.49900 * 111.19201 * 19.52800 * 4 3 2 6 6 C 1.29833 * 122.84198 * 340.47605 * 5 4 3 7 7 C 1.49909 * 118.58172 * 180.02562 * 2 1 3 8 8 H 1.08994 * 109.09283 * 40.04331 * 7 2 1 9 9 C 1.50704 * 109.12956 * 280.89613 * 7 2 1 10 10 O 1.21276 * 120.00225 * 358.31112 * 9 7 2 11 11 N 1.34779 * 119.99980 * 178.30732 * 9 7 2 12 12 C 1.46662 * 125.28460 * 0.02843 * 11 9 7 13 13 C 1.53524 * 107.03811 * 197.39803 * 12 11 9 14 14 H 1.09002 * 113.33895 * 211.20877 * 13 12 11 15 15 C 1.54773 * 109.68069 * 84.11880 * 13 12 11 16 16 C 1.54944 * 101.53175 * 212.77541 * 15 13 12 17 17 N 1.47766 * 104.86106 * 37.31753 * 16 15 13 18 18 C 1.46896 * 110.99567 * 214.30741 * 17 16 15 19 19 C 1.53001 * 109.47228 * 290.12589 * 18 17 16 20 20 C 1.50700 * 109.47082 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00522 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99813 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00022 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99982 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47300 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.47109 * 120.00157 * 24 22 20 27 27 H 1.48502 * 109.47630 * 240.00272 * 24 22 20 28 28 C 1.47667 * 108.81475 * 336.74082 * 17 16 15 29 29 H 1.09005 * 111.94849 * 236.63050 * 28 17 16 30 30 C 1.46492 * 125.29461 * 180.02562 * 11 9 7 31 31 H 1.08987 * 109.47006 * 269.97848 * 1 2 3 32 32 H 1.09001 * 109.46655 * 29.97901 * 1 2 3 33 33 H 1.09000 * 109.47014 * 149.97706 * 1 2 3 34 34 H 1.07998 * 118.57679 * 0.02562 * 3 2 1 35 35 H 1.09006 * 109.13668 * 259.08244 * 4 3 2 36 36 H 1.09008 * 109.08361 * 139.93671 * 4 3 2 37 37 H 1.08005 * 118.58617 * 160.45921 * 5 4 3 38 38 H 1.07997 * 118.58582 * 179.97438 * 6 5 4 39 39 H 1.08993 * 109.91840 * 78.05204 * 12 11 9 40 40 H 1.08999 * 109.91525 * 316.74174 * 12 11 9 41 41 H 1.09008 * 111.01714 * 94.70935 * 15 13 12 42 42 H 1.09000 * 111.01151 * 330.83751 * 15 13 12 43 43 H 1.08994 * 110.35811 * 278.46370 * 16 15 13 44 44 H 1.08998 * 110.35807 * 156.16255 * 16 15 13 45 45 H 1.08997 * 109.47465 * 50.12700 * 18 17 16 46 46 H 1.09004 * 109.47216 * 170.12746 * 18 17 16 47 47 H 1.09010 * 109.46923 * 300.00163 * 19 18 17 48 48 H 1.08995 * 109.47433 * 60.00209 * 19 18 17 49 49 H 0.97000 * 119.99879 * 179.97438 * 23 22 20 50 50 H 1.08997 * 109.71548 * 58.32796 * 30 11 9 51 51 H 1.09002 * 109.70922 * 297.78188 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1278 1.1399 0.0000 4 6 3.6228 1.2515 -0.0006 5 6 4.2611 -0.0216 -0.4683 6 6 3.6402 -1.1619 -0.4684 7 6 2.2243 -1.3164 -0.0006 8 1 1.7024 -2.0064 -0.6636 9 6 2.2242 -1.8795 1.3973 10 8 1.7192 -1.2518 2.3039 11 7 2.7852 -3.0807 1.6400 12 6 3.4262 -3.9349 0.6349 13 6 3.5191 -5.3446 1.2358 14 1 4.3856 -5.9065 0.8871 15 6 2.1853 -6.0965 1.0098 16 6 2.1108 -6.9833 2.2782 17 7 2.6552 -6.1400 3.3627 18 6 3.3915 -6.9513 4.3411 19 6 2.4073 -7.8193 5.1278 20 6 3.1627 -8.6512 6.1320 21 1 4.2371 -8.5688 6.2025 22 6 2.4818 -9.5168 6.9616 23 7 1.1733 -9.6169 6.8762 24 14 3.4181 -10.5485 8.2059 25 1 4.8697 -10.2529 8.1018 26 1 2.9441 -10.2234 9.5752 27 1 3.1848 -11.9889 7.9303 28 6 3.5267 -5.1057 2.7699 29 1 4.5346 -5.1361 3.1838 30 6 2.8497 -3.7359 2.9487 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.5420 2.0472 0.0004 35 1 3.9651 1.4724 1.0105 36 1 3.9193 2.0644 -0.6636 37 1 5.2815 0.0109 -0.8207 38 1 4.1662 -2.0367 -0.8209 39 1 4.4249 -3.5600 0.4113 40 1 2.8229 -3.9571 -0.2727 41 1 2.2287 -6.7072 0.1079 42 1 1.3468 -5.4013 0.9691 43 1 2.7199 -7.8782 2.1515 44 1 1.0768 -7.2543 2.4913 45 1 4.1040 -7.5909 3.8202 46 1 3.9266 -6.2954 5.0278 47 1 1.6948 -7.1796 5.6488 48 1 1.8722 -8.4753 4.4412 49 1 0.6943 -10.2261 7.4595 50 1 1.8422 -3.8720 3.3417 51 1 3.4328 -3.1246 3.6375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277940756.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:58 Heat of formation + Delta-G solvation = -19.354520 kcal Electronic energy + Delta-G solvation = -28719.499706 eV Core-core repulsion = 25003.921754 eV Total energy + Delta-G solvation = -3715.577952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.92940 -40.56092 -38.61565 -37.10388 -35.32186 -33.87717 -33.43763 -32.50257 -31.14693 -30.36344 -28.59027 -28.01674 -25.98922 -25.51469 -24.29576 -22.91863 -21.68958 -21.48708 -20.89250 -20.61339 -18.55625 -18.30778 -17.69390 -17.01789 -16.78482 -16.56486 -16.44099 -15.98746 -15.84387 -15.64666 -15.30295 -14.77247 -14.52044 -14.35892 -14.33382 -14.17588 -14.03065 -13.77667 -13.68930 -13.54344 -13.32672 -13.13177 -12.95015 -12.90180 -12.86057 -12.64664 -12.32613 -12.04436 -11.94564 -11.81463 -11.78817 -11.63072 -11.40901 -11.29395 -11.24397 -11.14002 -10.57490 -10.25792 -9.63538 -9.52926 -9.22596 -8.21167 -6.32823 1.02341 1.31904 1.38957 1.39965 1.52941 1.68334 2.08596 2.39345 3.00249 3.12402 3.37283 3.48665 3.56196 3.70059 3.76857 4.01996 4.11766 4.16271 4.19797 4.23584 4.30992 4.33538 4.37702 4.48348 4.48423 4.54711 4.62415 4.67811 4.71170 4.77587 4.83264 4.86797 4.88582 4.90120 4.91679 5.04129 5.06029 5.06623 5.13491 5.17194 5.25228 5.33028 5.38206 5.45615 5.64103 5.78727 5.80541 5.87821 6.04176 6.08220 6.21448 6.32885 6.51920 6.85345 7.13110 7.36637 8.91283 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024791 B = 0.002282 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.154620 B =12264.447915 C =12398.705369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.124 4.124 3 C -0.155 4.155 4 C -0.072 4.072 5 C -0.137 4.137 6 C -0.171 4.171 7 C -0.027 4.027 8 H 0.124 0.876 9 C 0.534 3.466 10 O -0.583 6.583 11 N -0.607 5.607 12 C 0.110 3.890 13 C -0.109 4.109 14 H 0.130 0.870 15 C -0.110 4.110 16 C 0.045 3.955 17 N -0.545 5.545 18 C 0.079 3.921 19 C 0.038 3.962 20 C -0.542 4.542 21 H 0.062 0.938 22 C -0.002 4.002 23 N -0.933 5.933 24 Si 0.967 3.033 25 H -0.260 1.260 26 H -0.280 1.280 27 H -0.277 1.277 28 C 0.065 3.935 29 H 0.094 0.906 30 C 0.126 3.874 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.032 0.968 46 H 0.059 0.941 47 H -0.016 1.016 48 H -0.008 1.008 49 H 0.263 0.737 50 H 0.048 0.952 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.660 18.162 -23.547 30.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.125 4.125 3 C -0.173 4.173 4 C -0.108 4.108 5 C -0.155 4.155 6 C -0.189 4.189 7 C -0.048 4.048 8 H 0.142 0.858 9 C 0.324 3.676 10 O -0.462 6.462 11 N -0.340 5.340 12 C -0.012 4.012 13 C -0.128 4.128 14 H 0.148 0.852 15 C -0.148 4.148 16 C -0.082 4.082 17 N -0.269 5.269 18 C -0.049 4.049 19 C 0.000 4.000 20 C -0.580 4.580 21 H 0.080 0.920 22 C -0.199 4.199 23 N -0.573 5.573 24 Si 0.792 3.208 25 H -0.183 1.183 26 H -0.206 1.206 27 H -0.202 1.202 28 C -0.045 4.045 29 H 0.112 0.888 30 C 0.002 3.998 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.138 0.862 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.050 0.950 46 H 0.077 0.923 47 H 0.002 0.998 48 H 0.010 0.990 49 H 0.072 0.928 50 H 0.066 0.934 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.806 18.700 -22.734 30.214 hybrid contribution 0.236 -1.189 1.204 1.708 sum 7.042 17.512 -21.530 28.632 Atomic orbital electron populations 1.20870 0.91719 1.03180 1.01466 1.20600 0.96252 0.93644 1.01961 1.22235 0.96698 0.97610 1.00755 1.19389 0.91840 0.97669 1.01942 1.22536 1.00671 0.94081 0.98237 1.22112 0.93688 0.99970 1.03082 1.18876 0.97077 0.96547 0.92267 0.85820 1.20720 0.76461 0.79253 0.91202 1.90684 1.47344 1.60119 1.48085 1.48183 1.57287 1.18357 1.10149 1.22158 0.99432 0.88018 0.91618 1.23246 0.99880 0.96366 0.93333 0.85194 1.22722 0.96759 0.98119 0.97202 1.23003 0.99501 0.95421 0.90309 1.63397 1.34698 1.14260 1.14585 1.22120 0.94929 0.94392 0.93429 1.18872 0.94216 0.93098 0.93775 1.21660 0.94132 1.23004 1.19220 0.91963 1.26004 0.95757 0.98529 0.99642 1.70128 1.08506 1.38462 1.40242 0.85365 0.79106 0.78155 0.78193 1.18332 1.20613 1.20241 1.23148 0.95332 0.90671 0.95310 0.88791 1.21584 1.00377 0.92583 0.85286 0.93285 0.90287 0.91464 0.86171 0.90239 0.87810 0.84361 0.83872 0.88644 0.88021 0.87641 0.91575 0.93590 0.92823 0.94996 0.92281 0.99758 0.98969 0.92818 0.93352 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 9.84 71.24 0.70 -1.49 16 2 C -0.12 -2.49 4.36 -15.49 -0.07 -2.56 16 3 C -0.15 -2.76 9.49 26.64 0.25 -2.51 16 4 C -0.07 -1.03 6.27 28.61 0.18 -0.85 16 5 C -0.14 -1.75 9.92 26.60 0.26 -1.49 16 6 C -0.17 -2.30 8.19 26.60 0.22 -2.09 16 7 C -0.03 -0.50 2.15 -13.52 -0.03 -0.53 16 8 H 0.12 1.77 7.76 -2.39 -0.02 1.75 16 9 C 0.53 14.22 7.15 87.66 0.63 14.85 16 10 O -0.58 -21.29 16.25 -3.02 -0.05 -21.34 16 11 N -0.61 -14.35 3.30 -818.76 -2.70 -17.05 16 12 C 0.11 1.57 4.62 86.52 0.40 1.97 16 13 C -0.11 -1.93 3.97 -9.24 -0.04 -1.96 16 14 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 15 C -0.11 -2.28 6.31 31.86 0.20 -2.08 16 16 C 0.05 1.42 5.82 86.80 0.50 1.92 16 17 N -0.55 -19.41 4.54 -856.58 -3.89 -23.30 16 18 C 0.08 3.30 4.59 86.30 0.40 3.70 16 19 C 0.04 2.06 5.03 29.85 0.15 2.21 16 20 C -0.54 -31.19 9.11 25.60 0.23 -30.96 16 21 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 22 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 23 N -0.93 -58.09 13.29 21.45 0.28 -57.80 16 24 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 25 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 27 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 28 C 0.06 1.73 3.61 45.83 0.17 1.89 16 29 H 0.09 2.38 7.64 -2.38 -0.02 2.36 16 30 C 0.13 3.74 6.49 86.67 0.56 4.30 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.17 7.94 -2.39 -0.02 1.15 16 33 H 0.07 1.12 8.03 -2.39 -0.02 1.10 16 34 H 0.12 1.84 7.88 -2.91 -0.02 1.82 16 35 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.14 1.09 8.06 -2.91 -0.02 1.06 16 38 H 0.14 1.15 6.30 -2.91 -0.02 1.13 16 39 H 0.10 0.92 6.99 -2.39 -0.02 0.91 16 40 H 0.10 0.99 7.42 -2.39 -0.02 0.97 16 41 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.07 1.50 7.93 -2.39 -0.02 1.48 16 43 H 0.05 1.47 7.60 -2.39 -0.02 1.45 16 44 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.03 1.27 7.83 -2.39 -0.02 1.25 16 46 H 0.06 2.45 7.99 -2.39 -0.02 2.43 16 47 H -0.02 -0.99 8.14 -2.38 -0.02 -1.00 16 48 H -0.01 -0.47 7.52 -2.39 -0.02 -0.49 16 49 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 50 H 0.05 1.79 7.86 -2.39 -0.02 1.77 16 51 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -76.94 396.55 1.74 -75.20 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.89 Total: 12.87 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 5.18 Total: -15.30 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -6.31 Total: -98.16 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -76.94 1.74 -75.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940756.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.841 kcal (2) G-P(sol) polarization free energy of solvation -76.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds