Wall clock time and date at job start Tue Mar 31 2020 15:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.29825 * 118.57960 * 2 1 4 4 C 1.49915 * 122.83947 * 180.02562 * 3 2 1 5 5 C 1.49915 * 111.18799 * 340.43631 * 4 3 2 6 6 C 1.29831 * 122.83947 * 19.51082 * 5 4 3 7 7 C 1.49911 * 118.57977 * 179.97438 * 2 1 3 8 8 H 1.08994 * 109.13870 * 319.92942 * 7 2 1 9 9 C 1.50698 * 109.13260 * 79.10754 * 7 2 1 10 10 O 1.21282 * 120.00035 * 34.96992 * 9 7 2 11 11 N 1.34772 * 120.00155 * 214.97243 * 9 7 2 12 12 C 1.46660 * 125.28673 * 354.98098 * 11 9 7 13 13 C 1.53522 * 107.04344 * 197.38024 * 12 11 9 14 14 H 1.09007 * 113.33876 * 211.21200 * 13 12 11 15 15 C 1.54774 * 109.68290 * 84.11875 * 13 12 11 16 16 C 1.54940 * 101.53120 * 212.78048 * 15 13 12 17 17 N 1.47765 * 104.86661 * 37.31443 * 16 15 13 18 18 C 1.46894 * 111.00196 * 214.30729 * 17 16 15 19 19 C 1.52997 * 109.47449 * 69.87569 * 18 17 16 20 20 C 1.50694 * 109.47463 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99895 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99966 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00147 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00013 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47166 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47191 * 119.99802 * 24 22 20 27 27 H 1.48499 * 109.47100 * 239.99931 * 24 22 20 28 28 C 1.47666 * 108.81280 * 336.74315 * 17 16 15 29 29 H 1.09007 * 111.95116 * 236.62591 * 28 17 16 30 30 C 1.46491 * 125.29314 * 174.95844 * 11 9 7 31 31 H 1.08998 * 109.46999 * 270.02577 * 1 2 3 32 32 H 1.09005 * 109.46898 * 30.02461 * 1 2 3 33 33 H 1.08999 * 109.47138 * 150.02580 * 1 2 3 34 34 H 1.07999 * 118.58255 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.13554 * 100.87123 * 4 3 2 36 36 H 1.08995 * 109.13613 * 219.99391 * 4 3 2 37 37 H 1.08003 * 118.58459 * 199.54374 * 5 4 3 38 38 H 1.07999 * 118.57926 * 180.02562 * 6 5 4 39 39 H 1.08999 * 109.91891 * 78.03209 * 12 11 9 40 40 H 1.08998 * 109.91923 * 316.72561 * 12 11 9 41 41 H 1.08996 * 111.01331 * 94.71084 * 15 13 12 42 42 H 1.09003 * 111.00985 * 330.84222 * 15 13 12 43 43 H 1.09005 * 110.36248 * 278.46637 * 16 15 13 44 44 H 1.09006 * 110.45387 * 156.21081 * 16 15 13 45 45 H 1.09006 * 109.47171 * 189.87476 * 18 17 16 46 46 H 1.09000 * 109.47231 * 309.87472 * 18 17 16 47 47 H 1.09006 * 109.46858 * 300.00099 * 19 18 17 48 48 H 1.09000 * 109.46983 * 59.99751 * 19 18 17 49 49 H 0.97001 * 119.99921 * 179.97438 * 23 22 20 50 50 H 1.09004 * 109.71651 * 58.35614 * 30 11 9 51 51 H 1.08996 * 109.67710 * 297.78124 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1281 1.1401 0.0000 4 6 3.6231 1.2514 -0.0006 5 6 4.2614 -0.0219 0.4670 6 6 3.6402 -1.1619 0.4679 7 6 2.2242 -1.3164 0.0006 8 1 1.7031 -2.0069 0.6637 9 6 2.2242 -1.8795 -1.3972 10 8 2.3075 -1.1349 -2.3509 11 7 2.1316 -3.2105 -1.5876 12 6 2.1304 -4.2204 -0.5241 13 6 2.4498 -5.5692 -1.1841 14 1 1.9782 -6.4162 -0.6858 15 6 3.9828 -5.7316 -1.3228 16 6 4.0900 -6.5518 -2.6330 17 7 3.0206 -6.0190 -3.5024 18 6 2.4454 -7.0800 -4.3398 19 6 1.6410 -8.0420 -3.4633 20 6 1.0504 -9.1300 -4.3225 21 1 1.2311 -9.1352 -5.3872 22 6 0.2803 -10.1196 -3.7491 23 7 0.0616 -10.1142 -2.4523 24 14 -0.4512 -11.4687 -4.8140 25 1 -0.0581 -11.2502 -6.2292 26 1 0.0551 -12.7883 -4.3584 27 1 -1.9316 -11.4407 -4.7009 28 6 1.9853 -5.3938 -2.6552 29 1 1.0005 -5.8279 -2.8279 30 6 2.0160 -3.8733 -2.8889 31 1 -0.3633 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.5424 2.0475 -0.0004 35 1 3.9646 1.4719 -1.0119 36 1 3.9211 2.0645 0.6613 37 1 5.2821 0.0105 0.8187 38 1 4.1664 -2.0368 0.8203 39 1 1.1489 -4.2612 -0.0519 40 1 2.8925 -3.9800 0.2171 41 1 4.3950 -6.2859 -0.4797 42 1 4.4706 -4.7625 -1.4274 43 1 3.9237 -7.6103 -2.4325 44 1 5.0652 -6.4031 -3.0968 45 1 1.7894 -6.6362 -5.0889 46 1 3.2475 -7.6256 -4.8368 47 1 2.2970 -8.4858 -2.7143 48 1 0.8389 -7.4963 -2.9663 49 1 -0.4805 -10.8102 -2.0490 50 1 2.8727 -3.6142 -3.5110 51 1 1.0957 -3.5583 -3.3807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277940759.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:01 Heat of formation + Delta-G solvation = 1.686478 kcal Electronic energy + Delta-G solvation = -29109.342599 eV Core-core repulsion = 25394.677053 eV Total energy + Delta-G solvation = -3714.665546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.82675 -39.56801 -37.64010 -35.76087 -33.34108 -33.18513 -31.90779 -31.55181 -29.51846 -29.21176 -27.43218 -26.92131 -24.71900 -24.02273 -23.21351 -21.78980 -20.77775 -20.30674 -19.59827 -19.07730 -17.44608 -16.74165 -16.60127 -15.93557 -15.86801 -15.29889 -14.98932 -14.70523 -14.51082 -14.33162 -14.06605 -13.71096 -13.53748 -13.30485 -13.23502 -13.17084 -12.79197 -12.47511 -12.44086 -12.34972 -12.16501 -11.97630 -11.68738 -11.63136 -11.28110 -10.98558 -10.81342 -10.77177 -10.68903 -10.61587 -10.57455 -10.45771 -10.15388 -9.97193 -9.74267 -9.49457 -9.20973 -8.72182 -8.49036 -8.41249 -7.66018 -6.09138 -4.11420 1.80620 2.04503 2.74349 3.15502 3.25648 3.33809 3.38046 4.29076 4.34850 4.39628 4.44740 4.58158 4.64708 4.79277 4.84017 4.94364 5.08011 5.10256 5.19625 5.26588 5.36140 5.36954 5.39650 5.44042 5.46212 5.52165 5.58620 5.64035 5.73147 5.75364 5.83151 5.88734 5.95854 6.01390 6.07214 6.12081 6.16704 6.25237 6.29902 6.40459 6.51294 6.52916 6.58589 6.63709 6.78180 6.84487 7.32956 7.43081 7.58021 7.65950 7.73949 7.93083 8.22535 8.34094 8.95212 9.53286 11.01760 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023180 B = 0.002570 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.667164 B =10893.616267 C =11272.224704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.110 4.110 3 C -0.142 4.142 4 C -0.064 4.064 5 C -0.134 4.134 6 C -0.154 4.154 7 C -0.032 4.032 8 H 0.100 0.900 9 C 0.541 3.459 10 O -0.533 6.533 11 N -0.610 5.610 12 C 0.109 3.891 13 C -0.118 4.118 14 H 0.108 0.892 15 C -0.120 4.120 16 C 0.041 3.959 17 N -0.528 5.528 18 C 0.049 3.951 19 C -0.007 4.007 20 C -0.519 4.519 21 H 0.056 0.944 22 C 0.058 3.942 23 N -0.895 5.895 24 Si 0.891 3.109 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.284 1.284 28 C 0.065 3.935 29 H 0.104 0.896 30 C 0.120 3.880 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.017 0.983 48 H 0.020 0.980 49 H 0.260 0.740 50 H 0.080 0.920 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.192 18.816 10.096 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.110 4.110 3 C -0.160 4.160 4 C -0.100 4.100 5 C -0.152 4.152 6 C -0.173 4.173 7 C -0.053 4.053 8 H 0.118 0.882 9 C 0.329 3.671 10 O -0.409 6.409 11 N -0.344 5.344 12 C -0.015 4.015 13 C -0.138 4.138 14 H 0.126 0.874 15 C -0.158 4.158 16 C -0.087 4.087 17 N -0.250 5.250 18 C -0.078 4.078 19 C -0.045 4.045 20 C -0.558 4.558 21 H 0.075 0.925 22 C -0.143 4.143 23 N -0.534 5.534 24 Si 0.719 3.281 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.210 1.210 28 C -0.045 4.045 29 H 0.121 0.879 30 C -0.003 4.003 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.035 0.965 48 H 0.038 0.962 49 H 0.069 0.931 50 H 0.098 0.902 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.372 19.564 9.341 22.597 hybrid contribution -0.827 -1.725 0.089 1.916 sum 5.545 17.839 9.431 20.926 Atomic orbital electron populations 1.20869 0.91794 1.02835 1.01875 1.20420 0.95629 0.93148 1.01844 1.21933 0.95676 0.97328 1.01108 1.19260 0.92687 0.96171 1.01887 1.22221 0.99501 0.94565 0.98910 1.21769 0.94518 0.98603 1.02381 1.18818 0.95432 0.96557 0.94524 0.88176 1.19933 0.76226 0.80365 0.90566 1.90689 1.49428 1.57672 1.43104 1.48205 1.72482 1.05005 1.08702 1.21853 1.01341 0.87773 0.90503 1.23171 0.97051 0.96745 0.96844 0.87374 1.22692 0.94713 1.00473 0.97950 1.23028 0.95550 0.98446 0.91663 1.63776 1.09638 1.30746 1.20880 1.22463 0.98115 0.91211 0.96033 1.19706 0.95116 0.94124 0.95535 1.21197 1.30984 1.09357 0.94282 0.92539 1.25009 0.96353 0.98022 0.94950 1.69958 1.39319 1.34197 1.09918 0.86544 0.78910 0.81849 0.80776 1.19682 1.21031 1.20995 1.23213 0.97593 0.92915 0.90733 0.87851 1.21861 1.02171 0.91703 0.84534 0.91418 0.91605 0.91959 0.87005 0.89190 0.90229 0.86828 0.86712 0.91475 0.90905 0.90993 0.91176 0.92120 0.91073 0.91772 0.91912 0.96453 0.96151 0.93055 0.90210 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.91 36.01 0.36 -0.76 16 2 C -0.11 -1.21 4.61 -101.12 -0.47 -1.68 16 3 C -0.14 -1.44 9.49 -36.07 -0.34 -1.79 16 4 C -0.06 -0.58 6.27 -29.79 -0.19 -0.77 16 5 C -0.13 -1.26 9.93 -36.08 -0.36 -1.62 16 6 C -0.15 -1.57 9.13 -36.08 -0.33 -1.90 16 7 C -0.03 -0.36 2.18 -94.84 -0.21 -0.57 16 8 H 0.10 0.97 7.20 -51.93 -0.37 0.59 16 9 C 0.54 7.85 6.75 -10.99 -0.07 7.78 16 10 O -0.53 -9.69 16.74 5.56 0.09 -9.60 16 11 N -0.61 -8.44 3.31 -172.72 -0.57 -9.01 16 12 C 0.11 1.26 5.29 -3.68 -0.02 1.24 16 13 C -0.12 -1.63 3.97 -88.22 -0.35 -1.98 16 14 H 0.11 1.59 8.14 -51.92 -0.42 1.17 16 15 C -0.12 -1.57 6.32 -24.77 -0.16 -1.72 16 16 C 0.04 0.64 6.48 -2.32 -0.02 0.62 16 17 N -0.53 -9.13 4.79 -222.08 -1.06 -10.20 16 18 C 0.05 0.98 5.26 -3.83 -0.02 0.96 16 19 C -0.01 -0.17 4.39 -27.89 -0.12 -0.29 16 20 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 21 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 24 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 C 0.06 1.05 2.94 -65.65 -0.19 0.86 16 29 H 0.10 1.90 5.79 -51.93 -0.30 1.60 16 30 C 0.12 1.87 6.49 -3.60 -0.02 1.85 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.59 7.95 -51.93 -0.41 0.17 16 33 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.11 0.95 7.88 -52.49 -0.41 0.53 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.11 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.11 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.70 7.73 -51.93 -0.40 0.30 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.91 7.93 -51.93 -0.41 0.49 16 43 H 0.06 1.07 6.18 -51.93 -0.32 0.74 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 47 H 0.02 0.44 6.53 -51.93 -0.34 0.10 16 48 H 0.02 0.52 5.98 -51.93 -0.31 0.21 16 49 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 50 H 0.08 1.36 7.86 -51.93 -0.41 0.96 16 51 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 395.59 15.07 5.96 5.96 Total: -1.00 -31.27 395.59 -11.51 -42.77 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.72 Total: 1.66 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -2.92 Total: -12.69 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: -0.90 Total: -44.27 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.27 -11.51 -42.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940759.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.460 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds