Wall clock time and date at job start Tue Mar 31 2020 15:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.29825 * 118.57960 * 2 1 4 4 C 1.49915 * 122.83947 * 180.02562 * 3 2 1 5 5 C 1.49915 * 111.18799 * 340.43631 * 4 3 2 6 6 C 1.29831 * 122.83947 * 19.51082 * 5 4 3 7 7 C 1.49911 * 118.57977 * 179.97438 * 2 1 3 8 8 H 1.08994 * 109.13870 * 319.92942 * 7 2 1 9 9 C 1.50698 * 109.13260 * 79.10754 * 7 2 1 10 10 O 1.21282 * 120.00035 * 34.96992 * 9 7 2 11 11 N 1.34772 * 120.00155 * 214.97243 * 9 7 2 12 12 C 1.46660 * 125.28673 * 354.98098 * 11 9 7 13 13 C 1.53522 * 107.04344 * 197.38024 * 12 11 9 14 14 H 1.09007 * 113.33876 * 211.21200 * 13 12 11 15 15 C 1.54774 * 109.68290 * 84.11875 * 13 12 11 16 16 C 1.54940 * 101.53120 * 212.78048 * 15 13 12 17 17 N 1.47765 * 104.86661 * 37.31443 * 16 15 13 18 18 C 1.46894 * 111.00196 * 214.30729 * 17 16 15 19 19 C 1.52997 * 109.47449 * 69.87569 * 18 17 16 20 20 C 1.50694 * 109.47463 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99895 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99966 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00147 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00013 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47166 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47191 * 119.99802 * 24 22 20 27 27 H 1.48499 * 109.47100 * 239.99931 * 24 22 20 28 28 C 1.47666 * 108.81280 * 336.74315 * 17 16 15 29 29 H 1.09007 * 111.95116 * 236.62591 * 28 17 16 30 30 C 1.46491 * 125.29314 * 174.95844 * 11 9 7 31 31 H 1.08998 * 109.46999 * 270.02577 * 1 2 3 32 32 H 1.09005 * 109.46898 * 30.02461 * 1 2 3 33 33 H 1.08999 * 109.47138 * 150.02580 * 1 2 3 34 34 H 1.07999 * 118.58255 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.13554 * 100.87123 * 4 3 2 36 36 H 1.08995 * 109.13613 * 219.99391 * 4 3 2 37 37 H 1.08003 * 118.58459 * 199.54374 * 5 4 3 38 38 H 1.07999 * 118.57926 * 180.02562 * 6 5 4 39 39 H 1.08999 * 109.91891 * 78.03209 * 12 11 9 40 40 H 1.08998 * 109.91923 * 316.72561 * 12 11 9 41 41 H 1.08996 * 111.01331 * 94.71084 * 15 13 12 42 42 H 1.09003 * 111.00985 * 330.84222 * 15 13 12 43 43 H 1.09005 * 110.36248 * 278.46637 * 16 15 13 44 44 H 1.09006 * 110.45387 * 156.21081 * 16 15 13 45 45 H 1.09006 * 109.47171 * 189.87476 * 18 17 16 46 46 H 1.09000 * 109.47231 * 309.87472 * 18 17 16 47 47 H 1.09006 * 109.46858 * 300.00099 * 19 18 17 48 48 H 1.09000 * 109.46983 * 59.99751 * 19 18 17 49 49 H 0.97001 * 119.99921 * 179.97438 * 23 22 20 50 50 H 1.09004 * 109.71651 * 58.35614 * 30 11 9 51 51 H 1.08996 * 109.67710 * 297.78124 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1281 1.1401 0.0000 4 6 3.6231 1.2514 -0.0006 5 6 4.2614 -0.0219 0.4670 6 6 3.6402 -1.1619 0.4679 7 6 2.2242 -1.3164 0.0006 8 1 1.7031 -2.0069 0.6637 9 6 2.2242 -1.8795 -1.3972 10 8 2.3075 -1.1349 -2.3509 11 7 2.1316 -3.2105 -1.5876 12 6 2.1304 -4.2204 -0.5241 13 6 2.4498 -5.5692 -1.1841 14 1 1.9782 -6.4162 -0.6858 15 6 3.9828 -5.7316 -1.3228 16 6 4.0900 -6.5518 -2.6330 17 7 3.0206 -6.0190 -3.5024 18 6 2.4454 -7.0800 -4.3398 19 6 1.6410 -8.0420 -3.4633 20 6 1.0504 -9.1300 -4.3225 21 1 1.2311 -9.1352 -5.3872 22 6 0.2803 -10.1196 -3.7491 23 7 0.0616 -10.1142 -2.4523 24 14 -0.4512 -11.4687 -4.8140 25 1 -0.0581 -11.2502 -6.2292 26 1 0.0551 -12.7883 -4.3584 27 1 -1.9316 -11.4407 -4.7009 28 6 1.9853 -5.3938 -2.6552 29 1 1.0005 -5.8279 -2.8279 30 6 2.0160 -3.8733 -2.8889 31 1 -0.3633 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.5424 2.0475 -0.0004 35 1 3.9646 1.4719 -1.0119 36 1 3.9211 2.0645 0.6613 37 1 5.2821 0.0105 0.8187 38 1 4.1664 -2.0368 0.8203 39 1 1.1489 -4.2612 -0.0519 40 1 2.8925 -3.9800 0.2171 41 1 4.3950 -6.2859 -0.4797 42 1 4.4706 -4.7625 -1.4274 43 1 3.9237 -7.6103 -2.4325 44 1 5.0652 -6.4031 -3.0968 45 1 1.7894 -6.6362 -5.0889 46 1 3.2475 -7.6256 -4.8368 47 1 2.2970 -8.4858 -2.7143 48 1 0.8389 -7.4963 -2.9663 49 1 -0.4805 -10.8102 -2.0490 50 1 2.8727 -3.6142 -3.5110 51 1 1.0957 -3.5583 -3.3807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277940759.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:00 Heat of formation + Delta-G solvation = -15.756788 kcal Electronic energy + Delta-G solvation = -29110.098996 eV Core-core repulsion = 25394.677053 eV Total energy + Delta-G solvation = -3715.421943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.95523 -40.66119 -38.64509 -37.11243 -35.20382 -33.90316 -33.43910 -32.46260 -30.93933 -30.52292 -28.58665 -28.00559 -25.89318 -25.55489 -24.25581 -23.40730 -21.69776 -21.39597 -20.67510 -20.50748 -18.83222 -18.33049 -17.53284 -17.20869 -16.70654 -16.58574 -16.38321 -16.03363 -15.78388 -15.51613 -15.42222 -14.72334 -14.57060 -14.46658 -14.26576 -14.20175 -13.93539 -13.74663 -13.62022 -13.52089 -13.28099 -13.22625 -13.13824 -12.96601 -12.77978 -12.53233 -12.23149 -12.03992 -11.94244 -11.89718 -11.76117 -11.74941 -11.47638 -11.33882 -11.26353 -11.20907 -10.53120 -10.27568 -9.66818 -9.50067 -9.17716 -8.21492 -6.31590 1.02184 1.24301 1.37547 1.39306 1.51321 1.70954 2.08626 2.39053 3.02528 3.11398 3.40267 3.48882 3.59457 3.71184 3.72231 4.00066 4.12054 4.17843 4.21206 4.23202 4.30212 4.35290 4.44764 4.46295 4.48691 4.57425 4.62823 4.65342 4.74595 4.76842 4.80630 4.86643 4.88206 4.92831 4.93499 5.01236 5.02254 5.04528 5.16303 5.16793 5.22964 5.31750 5.35195 5.47562 5.57424 5.73855 5.80617 5.85628 6.04044 6.05874 6.14047 6.34449 6.49336 6.84105 7.10796 7.37008 8.88906 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023180 B = 0.002570 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.667164 B =10893.616267 C =11272.224704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.135 4.135 3 C -0.145 4.145 4 C -0.071 4.071 5 C -0.134 4.134 6 C -0.172 4.172 7 C -0.027 4.027 8 H 0.117 0.883 9 C 0.540 3.460 10 O -0.577 6.577 11 N -0.609 5.609 12 C 0.113 3.887 13 C -0.115 4.115 14 H 0.098 0.902 15 C -0.107 4.107 16 C 0.036 3.964 17 N -0.527 5.527 18 C 0.065 3.935 19 C 0.007 3.993 20 C -0.542 4.542 21 H 0.056 0.944 22 C 0.006 3.994 23 N -0.926 5.926 24 Si 0.958 3.042 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.279 1.279 28 C 0.063 3.937 29 H 0.076 0.924 30 C 0.131 3.869 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.038 0.962 44 H 0.085 0.915 45 H 0.058 0.942 46 H 0.062 0.938 47 H -0.002 1.002 48 H 0.003 0.997 49 H 0.263 0.737 50 H 0.065 0.935 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.086 19.506 11.522 23.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.135 4.135 3 C -0.163 4.163 4 C -0.107 4.107 5 C -0.151 4.151 6 C -0.191 4.191 7 C -0.048 4.048 8 H 0.135 0.865 9 C 0.329 3.671 10 O -0.456 6.456 11 N -0.342 5.342 12 C -0.010 4.010 13 C -0.135 4.135 14 H 0.116 0.884 15 C -0.145 4.145 16 C -0.091 4.091 17 N -0.250 5.250 18 C -0.063 4.063 19 C -0.031 4.031 20 C -0.581 4.581 21 H 0.074 0.926 22 C -0.193 4.193 23 N -0.566 5.566 24 Si 0.783 3.217 25 H -0.190 1.190 26 H -0.204 1.204 27 H -0.205 1.205 28 C -0.047 4.047 29 H 0.094 0.906 30 C 0.007 3.993 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.143 0.857 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.100 0.900 40 H 0.123 0.877 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.057 0.943 44 H 0.103 0.897 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.016 0.984 48 H 0.021 0.979 49 H 0.072 0.928 50 H 0.083 0.917 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.272 20.250 10.787 24.068 hybrid contribution -1.094 -1.887 -0.377 2.213 sum 6.178 18.363 10.410 21.994 Atomic orbital electron populations 1.20872 0.91232 1.02235 1.02841 1.20645 0.96345 0.93436 1.03073 1.22247 0.96546 0.97679 0.99813 1.19380 0.92099 0.97222 1.01977 1.22537 1.00434 0.94342 0.97834 1.21947 0.94030 0.99711 1.03384 1.18829 0.96801 0.96898 0.92232 0.86534 1.20630 0.74889 0.79912 0.91625 1.90661 1.51486 1.58660 1.44842 1.48259 1.72065 1.05432 1.08398 1.21972 1.03334 0.85622 0.90039 1.23126 0.97579 0.97816 0.94976 0.88414 1.22660 0.94027 1.00638 0.97137 1.23117 0.95377 0.97580 0.93071 1.63804 1.10076 1.29394 1.21694 1.22172 0.97465 0.91054 0.95652 1.19524 0.94446 0.93966 0.95139 1.21625 1.31338 1.10411 0.94693 0.92602 1.25851 0.96776 1.00404 0.96227 1.70066 1.39984 1.35123 1.11457 0.85499 0.78086 0.78844 0.79242 1.18956 1.20406 1.20488 1.23101 0.96042 0.92958 0.92597 0.90592 1.21566 1.00923 0.91247 0.85566 0.89647 0.91401 0.93350 0.85709 0.90083 0.87703 0.84641 0.84996 0.90010 0.87721 0.88640 0.90277 0.94332 0.89701 0.92329 0.91907 0.98421 0.97933 0.92829 0.91701 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 9.91 71.24 0.71 -1.38 16 2 C -0.13 -2.79 4.61 -15.52 -0.07 -2.86 16 3 C -0.14 -2.71 9.49 26.61 0.25 -2.45 16 4 C -0.07 -1.15 6.27 28.61 0.18 -0.97 16 5 C -0.13 -2.16 9.93 26.61 0.26 -1.90 16 6 C -0.17 -3.06 9.13 26.61 0.24 -2.81 16 7 C -0.03 -0.55 2.18 -13.53 -0.03 -0.58 16 8 H 0.12 1.95 7.20 -2.39 -0.02 1.93 16 9 C 0.54 15.26 6.75 87.66 0.59 15.85 16 10 O -0.58 -21.19 16.74 -3.04 -0.05 -21.24 16 11 N -0.61 -16.35 3.31 -818.76 -2.71 -19.06 16 12 C 0.11 2.38 5.29 86.52 0.46 2.84 16 13 C -0.12 -3.07 3.97 -9.24 -0.04 -3.11 16 14 H 0.10 2.86 8.14 -2.38 -0.02 2.84 16 15 C -0.11 -2.58 6.32 31.86 0.20 -2.38 16 16 C 0.04 1.11 6.48 86.80 0.56 1.67 16 17 N -0.53 -18.55 4.79 -856.53 -4.10 -22.66 16 18 C 0.06 2.68 5.26 86.30 0.45 3.13 16 19 C 0.01 0.36 4.39 29.85 0.13 0.50 16 20 C -0.54 -30.08 9.11 25.60 0.23 -29.85 16 21 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 22 C 0.01 0.33 5.46 84.65 0.46 0.79 16 23 N -0.93 -54.21 13.29 21.45 0.28 -53.92 16 24 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 27 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 28 C 0.06 2.07 2.94 45.83 0.13 2.21 16 29 H 0.08 2.95 5.79 -2.38 -0.01 2.94 16 30 C 0.13 4.16 6.49 86.67 0.56 4.72 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.16 7.95 -2.38 -0.02 1.14 16 33 H 0.05 0.99 8.09 -2.39 -0.02 0.97 16 34 H 0.13 1.90 7.88 -2.91 -0.02 1.88 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 38 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.10 1.61 7.73 -2.39 -0.02 1.59 16 41 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.08 1.82 7.93 -2.39 -0.02 1.80 16 43 H 0.04 1.37 6.18 -2.38 -0.01 1.36 16 44 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 45 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 46 H 0.06 2.58 8.08 -2.39 -0.02 2.56 16 47 H 0.00 -0.13 6.53 -2.38 -0.02 -0.15 16 48 H 0.00 0.13 5.98 -2.39 -0.01 0.12 16 49 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 50 H 0.06 2.26 7.86 -2.39 -0.02 2.24 16 51 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -68.89 395.59 1.64 -67.24 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.89 Total: 20.58 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 5.30 Total: -16.60 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -6.53 Total: -95.64 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.05 Total: -21.24 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -68.89 1.64 -67.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277940759.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.488 kcal (2) G-P(sol) polarization free energy of solvation -68.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds