Wall clock time and date at job start Tue Mar 31 2020 15:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.29791 * 118.57437 * 2 1 4 4 C 1.49908 * 122.84487 * 180.02562 * 3 2 1 5 5 C 1.49911 * 111.19259 * 19.51272 * 4 3 2 6 6 C 1.29824 * 122.83991 * 340.48996 * 5 4 3 7 7 C 1.49914 * 122.83466 * 359.97438 * 6 5 4 8 8 H 1.09006 * 109.13560 * 139.90920 * 7 6 5 9 9 C 1.50699 * 109.13789 * 259.08277 * 7 6 5 10 10 O 1.21287 * 119.99963 * 120.00078 * 9 7 6 11 11 N 1.34770 * 120.00200 * 300.00479 * 9 7 6 12 12 C 1.47534 * 125.66005 * 0.04925 * 11 9 7 13 13 C 1.55153 * 105.01333 * 203.87194 * 12 11 9 14 14 C 1.53866 * 101.40843 * 324.35050 * 13 12 11 15 15 C 1.52562 * 115.90995 * 264.45732 * 14 13 12 16 16 N 1.48222 * 85.72775 * 219.14798 * 15 14 13 17 17 C 1.46897 * 111.00293 * 136.68599 * 16 15 14 18 18 C 1.52993 * 109.47383 * 70.33692 * 17 16 15 19 19 C 1.50698 * 109.47455 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99849 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00171 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00049 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00084 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47001 * 89.99935 * 23 21 19 25 25 H 1.48496 * 109.47441 * 210.00024 * 23 21 19 26 26 H 1.48501 * 109.47474 * 330.00432 * 23 21 19 27 27 C 1.48226 * 91.02249 * 23.68103 * 16 15 14 28 28 C 1.47369 * 125.66126 * 179.97438 * 11 9 7 29 29 H 1.08997 * 109.47248 * 269.98355 * 1 2 3 30 30 H 1.09000 * 109.47254 * 29.98588 * 1 2 3 31 31 H 1.09002 * 109.47093 * 149.98605 * 1 2 3 32 32 H 1.07994 * 118.57505 * 359.97438 * 3 2 1 33 33 H 1.09010 * 109.13637 * 259.07555 * 4 3 2 34 34 H 1.09002 * 109.09266 * 139.92932 * 4 3 2 35 35 H 1.08001 * 118.58049 * 160.45760 * 5 4 3 36 36 H 1.07998 * 118.58468 * 179.97438 * 6 5 4 37 37 H 1.09001 * 110.33546 * 84.98758 * 12 11 9 38 38 H 1.09003 * 110.33529 * 322.75099 * 12 11 9 39 39 H 1.09000 * 111.03583 * 206.32286 * 13 12 11 40 40 H 1.08998 * 111.03687 * 82.38477 * 13 12 11 41 41 H 1.08999 * 113.83174 * 333.34635 * 15 14 13 42 42 H 1.09003 * 113.83237 * 104.94017 * 15 14 13 43 43 H 1.09004 * 109.47123 * 190.33743 * 17 16 15 44 44 H 1.09005 * 109.46948 * 310.33689 * 17 16 15 45 45 H 1.08998 * 109.47425 * 300.00324 * 18 17 16 46 46 H 1.09005 * 109.47081 * 60.00079 * 18 17 16 47 47 H 0.96999 * 119.99961 * 180.02562 * 22 21 19 48 48 H 1.09000 * 113.83028 * 222.11650 * 27 16 15 49 49 H 1.09003 * 113.94342 * 90.53417 * 27 16 15 50 50 H 1.09000 * 109.97854 * 58.66149 * 28 11 9 51 51 H 1.08997 * 109.97731 * 297.36797 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1278 1.1398 0.0000 4 6 3.6227 1.2514 -0.0006 5 6 4.2610 -0.0219 -0.4679 6 6 3.6401 -1.1620 -0.4680 7 6 2.2243 -1.3165 -0.0001 8 1 1.7021 -2.0066 -0.6630 9 6 2.2246 -1.8797 1.3977 10 8 1.7199 -1.2520 2.3045 11 7 2.7857 -3.0808 1.6402 12 6 3.4326 -3.9465 0.6357 13 6 3.3482 -5.3790 1.2256 14 6 3.5325 -5.1010 2.7277 15 6 4.9534 -5.2476 3.2634 16 7 4.3214 -5.8529 4.4597 17 6 5.0591 -7.0449 4.8987 18 6 6.4059 -6.6225 5.4890 19 6 7.1630 -7.8454 5.9388 20 1 6.7273 -8.8259 5.8155 21 6 8.4120 -7.7126 6.5077 22 7 8.9423 -6.5185 6.6582 23 14 9.3501 -9.2284 7.0658 24 1 10.1865 -9.7326 5.9471 25 1 10.2214 -8.8759 8.2155 26 1 8.3882 -10.2819 7.4785 27 6 3.1250 -6.2295 3.6699 28 6 2.8563 -3.7469 2.9529 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3634 0.8901 -0.5136 31 1 -0.3633 -0.8899 -0.5141 32 1 1.5420 2.0471 -0.0004 33 1 3.9649 1.4725 1.0105 34 1 3.9193 2.0642 -0.6636 35 1 5.2814 0.0107 -0.8203 36 1 4.1662 -2.0369 -0.8203 37 1 4.4736 -3.6543 0.4981 38 1 2.8953 -3.8947 -0.3113 39 1 4.1520 -6.0078 0.8426 40 1 2.3746 -5.8271 1.0272 41 1 5.5699 -5.9418 2.6923 42 1 5.4500 -4.2975 3.4606 43 1 4.4796 -7.5722 5.6565 44 1 5.2265 -7.7031 4.0460 45 1 6.9855 -6.0952 4.7313 46 1 6.2386 -5.9644 6.3416 47 1 9.8211 -6.4251 7.0581 48 1 2.1821 -6.0525 4.1872 49 1 3.1853 -7.2212 3.2213 50 1 1.8520 -3.8937 3.3505 51 1 3.4468 -3.1457 3.6442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277941372.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:31 Heat of formation + Delta-G solvation = 6.434177 kcal Electronic energy + Delta-G solvation = -28387.751541 eV Core-core repulsion = 24673.291871 eV Total energy + Delta-G solvation = -3714.459670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.10720 -40.99961 -38.79719 -37.55744 -35.48984 -33.91656 -33.37067 -32.19317 -31.23186 -29.59766 -28.22558 -27.28933 -26.99618 -25.53312 -24.52242 -23.63061 -21.72440 -21.45414 -20.65168 -19.79701 -18.59185 -18.04156 -17.81603 -16.99629 -16.79473 -16.56759 -16.42161 -16.36547 -16.03224 -15.51894 -15.29421 -14.73776 -14.68669 -14.37916 -14.36648 -14.25169 -14.13928 -13.92777 -13.64937 -13.32317 -13.26058 -13.11817 -13.02605 -12.91828 -12.84464 -12.74873 -12.40931 -12.23241 -12.00504 -11.79214 -11.64239 -11.45733 -11.36997 -11.32546 -11.21995 -11.03242 -10.58019 -10.28211 -9.70820 -9.60300 -9.53825 -8.21703 -6.33916 0.99655 1.30262 1.39083 1.41089 1.52178 1.67082 2.05840 2.39065 2.97818 3.11594 3.28319 3.40080 3.54509 3.72123 3.73219 3.88125 4.01582 4.12479 4.21504 4.27930 4.31393 4.33271 4.43755 4.47014 4.52391 4.56532 4.63376 4.68237 4.69311 4.71728 4.77134 4.82509 4.85541 4.87790 4.89089 4.93679 5.03397 5.05249 5.14468 5.16176 5.20454 5.24304 5.33255 5.41177 5.49812 5.69057 5.79013 5.79250 5.84564 6.02685 6.12179 6.29273 6.49898 6.83664 7.10757 7.35772 8.90438 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021214 B = 0.002240 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.576970 B =12495.929788 C =13078.754900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.122 4.122 3 C -0.157 4.157 4 C -0.073 4.073 5 C -0.142 4.142 6 C -0.171 4.171 7 C -0.027 4.027 8 H 0.130 0.870 9 C 0.534 3.466 10 O -0.581 6.581 11 N -0.615 5.615 12 C 0.096 3.904 13 C -0.113 4.113 14 C -0.084 4.084 15 C 0.025 3.975 16 N -0.509 5.509 17 C 0.048 3.952 18 C 0.037 3.963 19 C -0.543 4.543 20 H 0.063 0.937 21 C -0.001 4.001 22 N -0.934 5.934 23 Si 0.968 3.032 24 H -0.269 1.269 25 H -0.284 1.284 26 H -0.262 1.262 27 C 0.023 3.977 28 C 0.142 3.858 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.039 0.961 45 H -0.008 1.008 46 H -0.017 1.017 47 H 0.263 0.737 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.067 0.933 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.279 9.350 -22.669 28.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.123 4.123 3 C -0.175 4.175 4 C -0.109 4.109 5 C -0.160 4.160 6 C -0.189 4.189 7 C -0.047 4.047 8 H 0.147 0.853 9 C 0.324 3.676 10 O -0.461 6.461 11 N -0.348 5.348 12 C -0.025 4.025 13 C -0.151 4.151 14 C -0.085 4.085 15 C -0.104 4.104 16 N -0.231 5.231 17 C -0.080 4.080 18 C 0.000 4.000 19 C -0.582 4.582 20 H 0.081 0.919 21 C -0.199 4.199 22 N -0.574 5.574 23 Si 0.792 3.208 24 H -0.194 1.194 25 H -0.210 1.210 26 H -0.186 1.186 27 C -0.105 4.105 28 C 0.019 3.981 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.140 0.860 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.150 0.850 36 H 0.157 0.843 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.011 0.989 46 H 0.001 0.999 47 H 0.072 0.928 48 H 0.111 0.889 49 H 0.109 0.891 50 H 0.086 0.914 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.507 10.204 -21.524 28.424 hybrid contribution 1.074 -0.895 0.545 1.501 sum -14.433 9.309 -20.979 27.113 Atomic orbital electron populations 1.20860 0.91181 1.03318 1.01643 1.20633 0.96541 0.93430 1.01685 1.22216 0.96342 0.97875 1.01051 1.19377 0.92282 0.97470 1.01759 1.22530 1.00537 0.94413 0.98477 1.22123 0.94134 0.99682 1.02945 1.18887 0.96574 0.96756 0.92528 0.85255 1.20685 0.76568 0.79168 0.91152 1.90683 1.47661 1.59843 1.47927 1.48693 1.57132 1.18563 1.10422 1.22729 0.98645 0.88842 0.92297 1.22739 1.04865 0.96303 0.91202 1.22159 0.95017 0.94327 0.97019 1.23681 0.95449 1.00044 0.91217 1.68604 1.05622 1.22794 1.26114 1.22451 0.95249 0.91590 0.98744 1.18845 0.91632 0.95319 0.94249 1.21633 1.02324 0.93970 1.40258 0.91899 1.26018 0.98802 0.99277 0.95816 1.70124 1.17437 1.24435 1.45368 0.85402 0.78377 0.79000 0.77988 1.19436 1.20951 1.18639 1.23818 0.95732 0.97620 0.93336 1.21291 0.99957 0.91631 0.85227 0.92984 0.90391 0.91078 0.85994 0.90546 0.87917 0.84958 0.84300 0.90374 0.87293 0.87880 0.88207 0.90419 0.91816 0.92213 0.94237 0.98949 0.99894 0.92785 0.88930 0.89106 0.91423 0.93791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 9.84 71.24 0.70 -1.21 16 2 C -0.12 -2.38 4.36 -15.48 -0.07 -2.44 16 3 C -0.16 -2.87 9.49 26.64 0.25 -2.61 16 4 C -0.07 -1.18 6.27 28.61 0.18 -1.00 16 5 C -0.14 -2.20 9.93 26.61 0.26 -1.94 16 6 C -0.17 -2.63 8.23 26.61 0.22 -2.41 16 7 C -0.03 -0.48 2.10 -13.52 -0.03 -0.51 16 8 H 0.13 1.64 7.73 -2.38 -0.02 1.62 16 9 C 0.53 13.66 7.17 87.66 0.63 14.29 16 10 O -0.58 -20.24 16.28 -3.05 -0.05 -20.29 16 11 N -0.61 -13.76 3.33 -812.68 -2.71 -16.47 16 12 C 0.10 1.35 5.22 86.92 0.45 1.80 16 13 C -0.11 -1.63 6.45 31.62 0.20 -1.42 16 14 C -0.08 -1.94 0.97 -52.12 -0.05 -1.99 16 15 C 0.02 0.78 6.35 85.90 0.55 1.32 16 16 N -0.51 -18.25 6.26 -930.93 -5.83 -24.08 16 17 C 0.05 2.00 4.75 86.30 0.41 2.41 16 18 C 0.04 2.00 5.03 29.85 0.15 2.15 16 19 C -0.54 -31.14 9.11 25.60 0.23 -30.91 16 20 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 21 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 22 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 23 Si 0.97 44.31 29.54 68.60 2.03 46.34 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 27 C 0.02 0.60 7.32 85.90 0.63 1.23 16 28 C 0.14 3.77 6.37 86.22 0.55 4.32 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.02 7.94 -2.39 -0.02 1.00 16 31 H 0.07 0.98 8.03 -2.39 -0.02 0.96 16 32 H 0.12 1.88 7.88 -2.91 -0.02 1.86 16 33 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.13 1.56 8.06 -2.91 -0.02 1.53 16 36 H 0.14 1.49 6.48 -2.91 -0.02 1.47 16 37 H 0.08 1.06 7.52 -2.39 -0.02 1.04 16 38 H 0.11 0.86 7.36 -2.39 -0.02 0.84 16 39 H 0.10 1.26 7.97 -2.39 -0.02 1.24 16 40 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.08 2.36 7.67 -2.39 -0.02 2.34 16 42 H 0.06 2.23 8.02 -2.39 -0.02 2.21 16 43 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.04 1.53 7.71 -2.38 -0.02 1.51 16 45 H -0.01 -0.45 7.53 -2.39 -0.02 -0.47 16 46 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 47 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 48 H 0.09 2.22 8.02 -2.39 -0.02 2.20 16 49 H 0.09 2.00 7.80 -2.39 -0.02 1.98 16 50 H 0.07 1.84 8.00 -2.39 -0.02 1.82 16 51 H 0.04 1.45 7.87 -2.39 -0.02 1.43 16 Total: -1.00 -76.13 400.95 0.34 -75.79 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.89 Total: 14.83 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 5.74 Total: -18.56 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -8.25 Total: -98.11 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.05 Total: -20.29 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -76.13 0.34 -75.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277941372.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.220 kcal (2) G-P(sol) polarization free energy of solvation -76.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds