Wall clock time and date at job start Tue Mar 31 2020 15:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.29822 * 118.58158 * 2 1 4 4 C 1.49912 * 122.83921 * 180.02562 * 3 2 1 5 5 C 1.49921 * 111.18268 * 340.41979 * 4 3 2 6 6 C 1.29830 * 122.83447 * 19.57796 * 5 4 3 7 7 C 1.49910 * 122.83748 * 359.97438 * 6 5 4 8 8 H 1.08997 * 109.13920 * 100.89934 * 7 6 5 9 9 C 1.50701 * 109.13489 * 220.02043 * 7 6 5 10 10 O 1.21284 * 119.99948 * 120.00071 * 9 7 6 11 11 N 1.34774 * 119.99792 * 299.99614 * 9 7 6 12 12 C 1.47020 * 120.28747 * 0.02562 * 11 9 7 13 13 C 1.54136 * 108.03033 * 228.72973 * 12 11 9 14 14 H 1.09001 * 112.95522 * 174.88252 * 13 12 11 15 15 C 1.55430 * 106.38015 * 299.58127 * 13 12 11 16 16 C 1.57408 * 99.69331 * 74.53627 * 15 13 12 17 17 H 1.08995 * 112.98206 * 162.22992 * 16 15 13 18 18 C 1.46982 * 120.28290 * 179.72333 * 11 9 7 19 19 N 1.48141 * 104.57172 * 39.61176 * 16 15 13 20 20 C 1.46894 * 110.99960 * 212.04058 * 19 16 15 21 21 C 1.53004 * 109.47407 * 197.52304 * 20 19 16 22 22 C 1.50698 * 109.47272 * 180.02562 * 21 20 19 23 23 H 1.07995 * 120.00187 * 0.02562 * 22 21 20 24 24 C 1.37880 * 120.00016 * 179.97438 * 22 21 20 25 25 N 1.31522 * 119.99634 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00075 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47000 * 90.00315 * 26 24 22 28 28 H 1.48500 * 109.47034 * 210.00064 * 26 24 22 29 29 H 1.48491 * 109.47159 * 330.00318 * 26 24 22 30 30 C 1.47474 * 108.26438 * 334.10641 * 19 16 15 31 31 H 1.08995 * 109.47055 * 269.98370 * 1 2 3 32 32 H 1.09001 * 109.46791 * 29.98610 * 1 2 3 33 33 H 1.08997 * 109.46549 * 149.98411 * 1 2 3 34 34 H 1.08006 * 118.58486 * 0.02562 * 3 2 1 35 35 H 1.09006 * 109.13498 * 100.87506 * 4 3 2 36 36 H 1.08998 * 109.13752 * 220.05002 * 4 3 2 37 37 H 1.07997 * 118.58620 * 199.55444 * 5 4 3 38 38 H 1.08001 * 118.57888 * 180.26565 * 6 5 4 39 39 H 1.09002 * 109.74886 * 348.36382 * 12 11 9 40 40 H 1.08997 * 109.75066 * 109.04751 * 12 11 9 41 41 H 1.09002 * 111.17419 * 191.85469 * 15 13 12 42 42 H 1.08994 * 111.17098 * 316.14945 * 15 13 12 43 43 H 1.09001 * 109.70504 * 251.28870 * 18 11 9 44 44 H 1.09001 * 109.70586 * 11.89759 * 18 11 9 45 45 H 1.08999 * 109.47480 * 317.51968 * 20 19 16 46 46 H 1.09005 * 109.47494 * 77.52240 * 20 19 16 47 47 H 1.09002 * 109.46670 * 299.99741 * 21 20 19 48 48 H 1.08998 * 109.47181 * 59.99697 * 21 20 19 49 49 H 0.97004 * 119.99528 * 179.97438 * 25 24 22 50 50 H 1.08996 * 109.96112 * 241.66725 * 30 19 16 51 51 H 1.08994 * 109.99275 * 120.42824 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1281 1.1400 0.0000 4 6 3.6231 1.2513 -0.0006 5 6 4.2613 -0.0220 0.4674 6 6 3.6402 -1.1621 0.4674 7 6 2.2242 -1.3165 0.0001 8 1 2.2240 -1.7233 -1.0111 9 6 1.5032 -2.2719 0.9157 10 8 0.5246 -1.9019 1.5293 11 7 1.9458 -3.5375 1.0526 12 6 3.1316 -3.9925 0.3121 13 6 2.7852 -5.3323 -0.3667 14 1 3.5824 -5.7002 -1.0126 15 6 2.4195 -6.3208 0.7757 16 6 0.9931 -5.7729 1.1538 17 1 0.4004 -6.4875 1.7248 18 6 1.2509 -4.4729 1.9485 19 7 0.3691 -5.4301 -0.1453 20 6 -0.5425 -4.2867 -0.0060 21 6 -1.4798 -4.2315 -1.2140 22 6 -2.4146 -3.0581 -1.0714 23 1 -2.3467 -2.4157 -0.2059 24 6 -3.3558 -2.8040 -2.0463 25 7 -3.4381 -3.5860 -3.1006 26 14 -4.5150 -1.3500 -1.8692 27 1 -3.9041 -0.1506 -2.4965 28 1 -5.8026 -1.6587 -2.5415 29 1 -4.7599 -1.0848 -0.4288 30 6 1.4441 -5.1344 -1.1106 31 1 -0.3633 -0.0003 1.0276 32 1 -0.3633 0.8901 -0.5136 33 1 -0.3632 -0.8898 -0.5141 34 1 1.5425 2.0475 0.0004 35 1 3.9646 1.4718 -1.0120 36 1 3.9212 2.0638 0.6621 37 1 5.2818 0.0104 0.8193 38 1 4.1649 -2.0363 0.8238 39 1 3.3991 -3.2547 -0.4443 40 1 3.9647 -4.1324 1.0009 41 1 2.3626 -7.3450 0.4069 42 1 3.1223 -6.2414 1.6049 43 1 1.8648 -4.6631 2.8289 44 1 0.2937 -4.0488 2.2519 45 1 -1.1303 -4.3996 0.9050 46 1 0.0365 -3.3647 0.0471 47 1 -0.8920 -4.1185 -2.1250 48 1 -2.0588 -5.1534 -1.2672 49 1 -4.1006 -3.4075 -3.7863 50 1 1.3595 -4.1046 -1.4578 51 1 1.3835 -5.8184 -1.9570 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277941937.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:55 Heat of formation + Delta-G solvation = 25.867817 kcal Electronic energy + Delta-G solvation = -31117.656004 eV Core-core repulsion = 27404.039039 eV Total energy + Delta-G solvation = -3713.616964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.43270 -39.30996 -37.41581 -34.91975 -33.37773 -32.65920 -32.20158 -31.64407 -30.31470 -28.50220 -27.04192 -25.56686 -25.09382 -24.06250 -23.91958 -21.35395 -20.87017 -20.35096 -19.36624 -18.86195 -17.24339 -16.49480 -16.35625 -16.11296 -15.68062 -15.12321 -14.77101 -14.55911 -14.45257 -14.25359 -14.01363 -13.62260 -13.38841 -13.27780 -13.18213 -12.91432 -12.61253 -12.44508 -12.27613 -12.14332 -11.85106 -11.77994 -11.73157 -11.37205 -11.11027 -10.94877 -10.84494 -10.74543 -10.59488 -10.45767 -10.37844 -10.30471 -9.70856 -9.62858 -9.38502 -9.29470 -8.99567 -8.60783 -8.40191 -8.24558 -7.57143 -5.90245 -3.90914 1.96407 2.35094 2.85855 3.11144 3.37861 3.43893 3.49412 4.38359 4.43661 4.49426 4.52556 4.61107 4.66629 4.80744 4.87818 5.00797 5.13240 5.18506 5.24667 5.28003 5.35312 5.39891 5.45878 5.52437 5.59222 5.64042 5.65564 5.70785 5.80868 5.88719 5.99804 6.03297 6.06327 6.11976 6.18438 6.23282 6.27333 6.40846 6.42674 6.51786 6.59560 6.71834 6.73891 6.90758 7.13997 7.17566 7.47847 7.53666 7.58160 7.88528 7.99881 8.18686 8.38548 8.56419 9.17481 9.72305 11.21301 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009186 B = 0.006095 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.481393 B = 4592.703806 C = 6866.154722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.083 4.083 3 C -0.180 4.180 4 C -0.060 4.060 5 C -0.140 4.140 6 C -0.160 4.160 7 C -0.039 4.039 8 H 0.114 0.886 9 C 0.532 3.468 10 O -0.513 6.513 11 N -0.612 5.612 12 C 0.107 3.893 13 C -0.131 4.131 14 H 0.099 0.901 15 C -0.121 4.121 16 C 0.057 3.943 17 H 0.103 0.897 18 C 0.084 3.916 19 N -0.515 5.515 20 C 0.050 3.950 21 C 0.034 3.966 22 C -0.512 4.512 23 H 0.056 0.944 24 C 0.059 3.941 25 N -0.896 5.896 26 Si 0.885 3.115 27 H -0.281 1.281 28 H -0.288 1.288 29 H -0.273 1.273 30 C 0.057 3.943 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.053 0.947 46 H 0.044 0.956 47 H 0.010 0.990 48 H 0.019 0.981 49 H 0.258 0.742 50 H 0.054 0.946 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.811 1.464 7.309 21.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.083 4.083 3 C -0.198 4.198 4 C -0.096 4.096 5 C -0.158 4.158 6 C -0.178 4.178 7 C -0.060 4.060 8 H 0.131 0.869 9 C 0.320 3.680 10 O -0.388 6.388 11 N -0.347 5.347 12 C -0.016 4.016 13 C -0.151 4.151 14 H 0.117 0.883 15 C -0.159 4.159 16 C -0.053 4.053 17 H 0.121 0.879 18 C -0.040 4.040 19 N -0.239 5.239 20 C -0.077 4.077 21 C -0.004 4.004 22 C -0.551 4.551 23 H 0.074 0.926 24 C -0.142 4.142 25 N -0.535 5.535 26 Si 0.713 3.287 27 H -0.207 1.207 28 H -0.213 1.213 29 H -0.198 1.198 30 C -0.071 4.071 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.131 0.869 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.115 0.885 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.028 0.972 48 H 0.037 0.963 49 H 0.068 0.932 50 H 0.072 0.928 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.837 1.252 7.311 20.244 hybrid contribution -0.145 1.361 0.224 1.387 sum 18.692 2.613 7.535 20.322 Atomic orbital electron populations 1.20999 0.90295 1.02603 1.03316 1.20654 0.96912 0.92292 0.98440 1.21865 0.95211 0.97538 1.05167 1.19227 0.92977 0.96059 1.01360 1.22226 0.99638 0.94395 0.99523 1.22103 0.94472 0.98788 1.02471 1.18909 0.92793 0.94345 0.99928 0.86897 1.20128 0.83889 0.81640 0.82327 1.90740 1.25556 1.75972 1.46492 1.48085 1.29855 1.11048 1.45692 1.22193 0.87235 0.96675 0.95490 1.23259 0.99271 0.95113 0.97463 0.88300 1.23272 0.95955 0.99090 0.97545 1.23875 0.94137 0.95068 0.92190 0.87887 1.22587 0.98680 0.90739 0.91974 1.63860 1.15263 1.39478 1.05257 1.22748 0.94182 0.89591 1.01175 1.19013 0.93094 0.96907 0.91375 1.21209 1.16322 1.11694 1.05831 0.92600 1.24957 0.97415 0.96388 0.95415 1.69987 1.35515 1.38073 1.09957 0.86694 0.80544 0.83149 0.78292 1.20721 1.21344 1.19806 1.22802 0.87975 1.00555 0.95791 0.90048 0.93195 0.90267 0.86935 0.89789 0.90422 0.87003 0.86541 0.89388 0.91576 0.90700 0.90974 0.91722 0.88521 0.92805 0.93797 0.97184 0.96279 0.93221 0.92773 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 8.18 36.01 0.29 -1.82 16 2 C -0.08 -1.29 5.37 -101.11 -0.54 -1.83 16 3 C -0.18 -2.37 9.49 -36.07 -0.34 -2.71 16 4 C -0.06 -0.61 6.27 -29.79 -0.19 -0.80 16 5 C -0.14 -1.41 9.93 -36.07 -0.36 -1.77 16 6 C -0.16 -1.81 7.95 -36.08 -0.29 -2.10 16 7 C -0.04 -0.56 2.14 -94.84 -0.20 -0.77 16 8 H 0.11 1.62 7.54 -51.93 -0.39 1.23 16 9 C 0.53 8.75 4.62 -10.99 -0.05 8.70 16 10 O -0.51 -10.29 11.87 5.55 0.07 -10.23 16 11 N -0.61 -8.52 1.77 -171.23 -0.30 -8.83 16 12 C 0.11 1.14 3.95 -3.16 -0.01 1.12 16 13 C -0.13 -1.45 4.26 -87.88 -0.37 -1.82 16 14 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 15 C -0.12 -1.29 6.29 -23.04 -0.14 -1.44 16 16 C 0.06 0.80 4.29 -63.82 -0.27 0.52 16 17 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 18 C 0.08 1.18 5.26 -2.97 -0.02 1.17 16 19 N -0.52 -9.26 5.10 -220.33 -1.12 -10.39 16 20 C 0.05 1.09 3.31 -3.83 -0.01 1.07 16 21 C 0.03 0.91 5.11 -27.88 -0.14 0.76 16 22 C -0.51 -14.91 9.11 -34.44 -0.31 -15.22 16 23 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 24 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 25 N -0.90 -27.56 13.29 55.43 0.74 -26.83 16 26 Si 0.89 22.47 29.54 -169.99 -5.02 17.45 16 27 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 30 C 0.06 0.90 5.43 -2.65 -0.01 0.89 16 31 H 0.08 1.57 6.98 -51.93 -0.36 1.21 16 32 H 0.05 0.83 7.95 -51.93 -0.41 0.42 16 33 H 0.08 1.70 7.75 -51.93 -0.40 1.30 16 34 H 0.11 1.39 7.88 -52.48 -0.41 0.97 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.11 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.12 1.12 5.76 -52.49 -0.30 0.82 16 39 H 0.09 0.88 5.04 -51.93 -0.26 0.62 16 40 H 0.07 0.56 7.84 -51.93 -0.41 0.16 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.64 7.89 -51.93 -0.41 0.23 16 43 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 44 H 0.10 1.65 5.66 -51.93 -0.29 1.36 16 45 H 0.05 1.24 7.14 -51.93 -0.37 0.87 16 46 H 0.04 0.95 2.96 -51.93 -0.15 0.80 16 47 H 0.01 0.28 7.67 -51.93 -0.40 -0.12 16 48 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 50 H 0.05 0.95 6.89 -51.93 -0.36 0.60 16 51 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -33.19 373.46 -11.38 -44.56 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.28 Total: 3.02 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -3.08 Total: -14.40 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.69 Total: -46.04 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.19 -11.38 -44.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277941937.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.432 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds