Wall clock time and date at job start Tue Mar 31 2020 15:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.29822 * 118.58158 * 2 1 4 4 C 1.49912 * 122.83921 * 180.02562 * 3 2 1 5 5 C 1.49921 * 111.18268 * 340.41979 * 4 3 2 6 6 C 1.29830 * 122.83447 * 19.57796 * 5 4 3 7 7 C 1.49910 * 122.83748 * 359.97438 * 6 5 4 8 8 H 1.08997 * 109.13920 * 100.89934 * 7 6 5 9 9 C 1.50701 * 109.13489 * 220.02043 * 7 6 5 10 10 O 1.21284 * 119.99948 * 120.00071 * 9 7 6 11 11 N 1.34774 * 119.99792 * 299.99614 * 9 7 6 12 12 C 1.47020 * 120.28747 * 0.02562 * 11 9 7 13 13 C 1.54136 * 108.03033 * 228.72973 * 12 11 9 14 14 H 1.09001 * 112.95522 * 174.88252 * 13 12 11 15 15 C 1.55430 * 106.38015 * 299.58127 * 13 12 11 16 16 C 1.57408 * 99.69331 * 74.53627 * 15 13 12 17 17 H 1.08995 * 112.98206 * 162.22992 * 16 15 13 18 18 C 1.46982 * 120.28290 * 179.72333 * 11 9 7 19 19 N 1.48141 * 104.57172 * 39.61176 * 16 15 13 20 20 C 1.46894 * 110.99960 * 212.04058 * 19 16 15 21 21 C 1.53004 * 109.47407 * 197.52304 * 20 19 16 22 22 C 1.50698 * 109.47272 * 180.02562 * 21 20 19 23 23 H 1.07995 * 120.00187 * 0.02562 * 22 21 20 24 24 C 1.37880 * 120.00016 * 179.97438 * 22 21 20 25 25 N 1.31522 * 119.99634 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00075 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47000 * 90.00315 * 26 24 22 28 28 H 1.48500 * 109.47034 * 210.00064 * 26 24 22 29 29 H 1.48491 * 109.47159 * 330.00318 * 26 24 22 30 30 C 1.47474 * 108.26438 * 334.10641 * 19 16 15 31 31 H 1.08995 * 109.47055 * 269.98370 * 1 2 3 32 32 H 1.09001 * 109.46791 * 29.98610 * 1 2 3 33 33 H 1.08997 * 109.46549 * 149.98411 * 1 2 3 34 34 H 1.08006 * 118.58486 * 0.02562 * 3 2 1 35 35 H 1.09006 * 109.13498 * 100.87506 * 4 3 2 36 36 H 1.08998 * 109.13752 * 220.05002 * 4 3 2 37 37 H 1.07997 * 118.58620 * 199.55444 * 5 4 3 38 38 H 1.08001 * 118.57888 * 180.26565 * 6 5 4 39 39 H 1.09002 * 109.74886 * 348.36382 * 12 11 9 40 40 H 1.08997 * 109.75066 * 109.04751 * 12 11 9 41 41 H 1.09002 * 111.17419 * 191.85469 * 15 13 12 42 42 H 1.08994 * 111.17098 * 316.14945 * 15 13 12 43 43 H 1.09001 * 109.70504 * 251.28870 * 18 11 9 44 44 H 1.09001 * 109.70586 * 11.89759 * 18 11 9 45 45 H 1.08999 * 109.47480 * 317.51968 * 20 19 16 46 46 H 1.09005 * 109.47494 * 77.52240 * 20 19 16 47 47 H 1.09002 * 109.46670 * 299.99741 * 21 20 19 48 48 H 1.08998 * 109.47181 * 59.99697 * 21 20 19 49 49 H 0.97004 * 119.99528 * 179.97438 * 25 24 22 50 50 H 1.08996 * 109.96112 * 241.66725 * 30 19 16 51 51 H 1.08994 * 109.99275 * 120.42824 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1281 1.1400 0.0000 4 6 3.6231 1.2513 -0.0006 5 6 4.2613 -0.0220 0.4674 6 6 3.6402 -1.1621 0.4674 7 6 2.2242 -1.3165 0.0001 8 1 2.2240 -1.7233 -1.0111 9 6 1.5032 -2.2719 0.9157 10 8 0.5246 -1.9019 1.5293 11 7 1.9458 -3.5375 1.0526 12 6 3.1316 -3.9925 0.3121 13 6 2.7852 -5.3323 -0.3667 14 1 3.5824 -5.7002 -1.0126 15 6 2.4195 -6.3208 0.7757 16 6 0.9931 -5.7729 1.1538 17 1 0.4004 -6.4875 1.7248 18 6 1.2509 -4.4729 1.9485 19 7 0.3691 -5.4301 -0.1453 20 6 -0.5425 -4.2867 -0.0060 21 6 -1.4798 -4.2315 -1.2140 22 6 -2.4146 -3.0581 -1.0714 23 1 -2.3467 -2.4157 -0.2059 24 6 -3.3558 -2.8040 -2.0463 25 7 -3.4381 -3.5860 -3.1006 26 14 -4.5150 -1.3500 -1.8692 27 1 -3.9041 -0.1506 -2.4965 28 1 -5.8026 -1.6587 -2.5415 29 1 -4.7599 -1.0848 -0.4288 30 6 1.4441 -5.1344 -1.1106 31 1 -0.3633 -0.0003 1.0276 32 1 -0.3633 0.8901 -0.5136 33 1 -0.3632 -0.8898 -0.5141 34 1 1.5425 2.0475 0.0004 35 1 3.9646 1.4718 -1.0120 36 1 3.9212 2.0638 0.6621 37 1 5.2818 0.0104 0.8193 38 1 4.1649 -2.0363 0.8238 39 1 3.3991 -3.2547 -0.4443 40 1 3.9647 -4.1324 1.0009 41 1 2.3626 -7.3450 0.4069 42 1 3.1223 -6.2414 1.6049 43 1 1.8648 -4.6631 2.8289 44 1 0.2937 -4.0488 2.2519 45 1 -1.1303 -4.3996 0.9050 46 1 0.0365 -3.3647 0.0471 47 1 -0.8920 -4.1185 -2.1250 48 1 -2.0588 -5.1534 -1.2672 49 1 -4.1006 -3.4075 -3.7863 50 1 1.3595 -4.1046 -1.4578 51 1 1.3835 -5.8184 -1.9570 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277941937.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:54 Heat of formation + Delta-G solvation = 5.112533 kcal Electronic energy + Delta-G solvation = -31118.556020 eV Core-core repulsion = 27404.039039 eV Total energy + Delta-G solvation = -3714.516981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.59033 -40.43043 -38.54269 -36.42245 -35.19290 -33.87844 -33.54942 -32.89011 -31.49238 -30.23820 -28.22982 -26.93186 -26.23193 -25.85327 -24.92298 -23.09312 -21.97420 -21.40504 -20.73450 -20.00315 -18.55552 -18.31303 -17.64847 -17.36913 -16.66715 -16.57707 -16.25800 -16.06076 -15.72784 -15.33949 -15.22349 -14.81078 -14.54570 -14.52017 -14.30890 -14.26358 -14.17342 -13.66772 -13.61528 -13.53311 -13.31953 -13.10940 -13.06618 -12.94213 -12.74424 -12.66205 -12.43747 -12.17716 -11.91847 -11.64050 -11.60033 -11.45126 -11.39694 -11.29234 -11.20526 -10.82764 -10.59253 -10.34134 -9.73356 -9.47333 -9.00909 -8.24151 -6.33692 1.07880 1.30344 1.31714 1.32048 1.44066 1.67320 2.05366 2.34795 3.08244 3.15906 3.39204 3.50058 3.57940 3.67561 3.77613 3.90256 4.02329 4.13919 4.23879 4.28915 4.35140 4.36350 4.39952 4.49464 4.51842 4.60384 4.65297 4.70400 4.73025 4.79219 4.82188 4.87469 4.90107 4.94861 4.97080 5.07865 5.09570 5.13759 5.17523 5.21094 5.26895 5.34414 5.41283 5.56915 5.60902 5.75443 5.77629 5.88484 6.00559 6.10729 6.26228 6.34435 6.37939 6.81540 7.19955 7.34348 8.88120 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009186 B = 0.006095 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.481393 B = 4592.703806 C = 6866.154722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.125 4.125 3 C -0.156 4.156 4 C -0.066 4.066 5 C -0.127 4.127 6 C -0.176 4.176 7 C -0.032 4.032 8 H 0.101 0.899 9 C 0.521 3.479 10 O -0.565 6.565 11 N -0.609 5.609 12 C 0.101 3.899 13 C -0.115 4.115 14 H 0.137 0.863 15 C -0.103 4.103 16 C 0.048 3.952 17 H 0.105 0.895 18 C 0.087 3.913 19 N -0.536 5.536 20 C 0.076 3.924 21 C 0.047 3.953 22 C -0.531 4.531 23 H 0.045 0.955 24 C 0.009 3.991 25 N -0.928 5.928 26 Si 0.953 3.047 27 H -0.269 1.269 28 H -0.274 1.274 29 H -0.271 1.271 30 C 0.051 3.949 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.032 0.968 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.148 0.852 38 H 0.139 0.861 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.054 0.946 45 H 0.031 0.969 46 H 0.048 0.952 47 H -0.016 1.016 48 H -0.017 1.017 49 H 0.264 0.736 50 H 0.025 0.975 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.118 2.163 8.195 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.125 4.125 3 C -0.174 4.174 4 C -0.102 4.102 5 C -0.145 4.145 6 C -0.194 4.194 7 C -0.053 4.053 8 H 0.118 0.882 9 C 0.310 3.690 10 O -0.443 6.443 11 N -0.343 5.343 12 C -0.020 4.020 13 C -0.134 4.134 14 H 0.155 0.845 15 C -0.140 4.140 16 C -0.061 4.061 17 H 0.123 0.877 18 C -0.037 4.037 19 N -0.260 5.260 20 C -0.052 4.052 21 C 0.009 3.991 22 C -0.569 4.569 23 H 0.063 0.937 24 C -0.189 4.189 25 N -0.569 5.569 26 Si 0.778 3.222 27 H -0.195 1.195 28 H -0.199 1.199 29 H -0.196 1.196 30 C -0.077 4.077 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.135 0.865 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.166 0.834 38 H 0.157 0.843 39 H 0.113 0.887 40 H 0.127 0.873 41 H 0.101 0.899 42 H 0.127 0.873 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.050 0.950 46 H 0.065 0.935 47 H 0.003 0.997 48 H 0.002 0.998 49 H 0.073 0.927 50 H 0.044 0.956 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 23.188 1.915 8.187 24.665 hybrid contribution -1.518 1.165 -0.088 1.916 sum 21.670 3.080 8.098 23.338 Atomic orbital electron populations 1.20756 0.93334 1.00454 1.01294 1.20600 0.95137 0.94269 1.02518 1.22249 0.97604 0.96589 1.00934 1.19427 0.90163 0.97345 1.03225 1.22563 1.00938 0.93404 0.97581 1.22107 0.92484 1.00539 1.04285 1.18813 0.94782 0.92896 0.98775 0.88176 1.20693 0.83423 0.82762 0.82115 1.90710 1.27727 1.77165 1.48732 1.48207 1.30528 1.10170 1.45394 1.22541 0.86731 0.96407 0.96333 1.23271 0.97043 0.95746 0.97365 0.84548 1.23266 0.93453 0.98997 0.98325 1.24037 0.96548 0.95381 0.90150 0.87691 1.22539 0.97675 0.90237 0.93226 1.63656 1.16709 1.37304 1.08302 1.22209 0.94051 0.91694 0.97216 1.18806 0.93117 0.94486 0.92672 1.21435 1.17369 1.12332 1.05792 0.93711 1.25818 0.98976 0.99305 0.94831 1.70103 1.36344 1.39759 1.10666 0.85627 0.78520 0.79635 0.78455 1.19455 1.19908 1.19550 1.22828 0.90545 0.98567 0.95795 0.92258 0.92529 0.94911 0.86451 0.87744 0.87839 0.83434 0.84310 0.88728 0.87297 0.89897 0.87346 0.88218 0.92764 0.95050 0.93459 0.99726 0.99837 0.92731 0.95633 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.06 8.18 71.24 0.58 -3.48 16 2 C -0.12 -4.02 5.37 -15.52 -0.08 -4.10 16 3 C -0.16 -3.91 9.49 26.61 0.25 -3.65 16 4 C -0.07 -1.09 6.27 28.61 0.18 -0.91 16 5 C -0.13 -2.01 9.93 26.61 0.26 -1.75 16 6 C -0.18 -3.47 7.95 26.61 0.21 -3.26 16 7 C -0.03 -0.93 2.14 -13.52 -0.03 -0.96 16 8 H 0.10 3.03 7.54 -2.39 -0.02 3.01 16 9 C 0.52 17.88 4.62 87.66 0.40 18.28 16 10 O -0.56 -24.66 11.87 -3.04 -0.04 -24.69 16 11 N -0.61 -16.67 1.77 -814.04 -1.44 -18.11 16 12 C 0.10 1.81 3.95 86.66 0.34 2.15 16 13 C -0.11 -2.16 4.26 -9.02 -0.04 -2.20 16 14 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 15 C -0.10 -1.80 6.29 32.99 0.21 -1.59 16 16 C 0.05 1.31 4.29 46.75 0.20 1.51 16 17 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 18 C 0.09 2.44 5.26 86.81 0.46 2.89 16 19 N -0.54 -20.28 5.10 -851.00 -4.34 -24.62 16 20 C 0.08 3.64 3.31 86.31 0.29 3.93 16 21 C 0.05 2.76 5.11 29.85 0.15 2.91 16 22 C -0.53 -33.36 9.11 25.60 0.23 -33.12 16 23 H 0.04 2.85 7.74 -2.91 -0.02 2.83 16 24 C 0.01 0.54 5.46 84.65 0.46 1.00 16 25 N -0.93 -59.73 13.29 21.45 0.28 -59.44 16 26 Si 0.95 48.04 29.54 68.60 2.03 50.07 16 27 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 28 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 29 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16 30 C 0.05 1.63 5.43 86.75 0.47 2.10 16 31 H 0.06 2.54 6.98 -2.39 -0.02 2.53 16 32 H 0.06 2.04 7.95 -2.39 -0.02 2.02 16 33 H 0.03 1.56 7.75 -2.39 -0.02 1.54 16 34 H 0.12 2.75 7.88 -2.91 -0.02 2.73 16 35 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.14 2.05 5.76 -2.91 -0.02 2.03 16 39 H 0.09 1.63 5.04 -2.39 -0.01 1.62 16 40 H 0.11 1.16 7.84 -2.39 -0.02 1.14 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.11 1.25 7.89 -2.39 -0.02 1.23 16 43 H 0.10 2.10 8.12 -2.39 -0.02 2.08 16 44 H 0.05 2.00 5.66 -2.39 -0.01 1.98 16 45 H 0.03 1.60 7.14 -2.39 -0.02 1.58 16 46 H 0.05 2.26 2.96 -2.38 -0.01 2.25 16 47 H -0.02 -0.98 7.67 -2.39 -0.02 -1.00 16 48 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 49 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 50 H 0.03 0.96 6.89 -2.39 -0.02 0.94 16 51 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -82.12 373.46 1.97 -80.16 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.91 Total: 16.90 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: 4.56 Total: -20.25 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -5.49 Total: -102.17 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.04 Total: -24.69 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Total: -82.12 1.97 -80.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277941937.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.268 kcal (2) G-P(sol) polarization free energy of solvation -82.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds