Wall clock time and date at job start Tue Mar 31 2020 15:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29751 * 118.60558 * 2 1 4 4 C 1.49910 * 122.89292 * 180.02562 * 3 2 1 5 5 C 1.49910 * 111.14539 * 340.38950 * 4 3 2 6 6 C 1.29827 * 122.83948 * 19.59023 * 5 4 3 7 7 C 1.49910 * 118.57604 * 179.97438 * 2 1 3 8 8 H 1.09001 * 109.13630 * 79.10689 * 7 2 1 9 9 C 1.50696 * 109.13789 * 319.98364 * 7 2 1 10 10 O 1.21281 * 120.00325 * 358.30668 * 9 7 2 11 11 N 1.34780 * 120.00261 * 178.30596 * 9 7 2 12 12 C 1.47317 * 135.86905 * 359.63429 * 11 9 7 13 13 C 1.51997 * 87.70183 * 206.05612 * 12 11 9 14 14 C 1.52676 * 121.99823 * 100.01801 * 13 12 11 15 15 N 1.48228 * 85.71149 * 104.28216 * 14 13 12 16 16 C 1.46899 * 110.99813 * 136.71987 * 15 14 13 17 17 C 1.53003 * 109.46749 * 90.27889 * 16 15 14 18 18 C 1.53001 * 109.47039 * 179.97438 * 17 16 15 19 19 C 1.50704 * 109.47085 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99968 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00091 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99917 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99739 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47028 * 90.00266 * 23 21 19 25 25 H 1.48504 * 109.46770 * 209.99797 * 23 21 19 26 26 H 1.48500 * 109.47329 * 329.99973 * 23 21 19 27 27 C 1.48222 * 91.07238 * 23.70068 * 15 14 13 28 28 C 1.47315 * 135.87637 * 179.97438 * 11 9 7 29 29 H 1.08998 * 109.46833 * 270.03483 * 1 2 3 30 30 H 1.08999 * 109.46768 * 30.03103 * 1 2 3 31 31 H 1.09000 * 109.47341 * 150.03228 * 1 2 3 32 32 H 1.07997 * 118.52292 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.13547 * 219.97625 * 4 3 2 34 34 H 1.08998 * 109.13364 * 100.79707 * 4 3 2 35 35 H 1.08001 * 118.58488 * 199.57096 * 5 4 3 36 36 H 1.08002 * 118.58481 * 179.97438 * 6 5 4 37 37 H 1.09000 * 113.52988 * 320.70056 * 12 11 9 38 38 H 1.09004 * 113.53187 * 91.33162 * 12 11 9 39 39 H 1.08996 * 113.83143 * 218.47583 * 14 13 12 40 40 H 1.08997 * 113.83274 * 350.08416 * 14 13 12 41 41 H 1.09002 * 109.47155 * 210.27739 * 16 15 14 42 42 H 1.09002 * 109.47563 * 330.28477 * 16 15 14 43 43 H 1.08993 * 109.47273 * 300.00060 * 17 16 15 44 44 H 1.09002 * 109.47058 * 60.00291 * 17 16 15 45 45 H 1.09002 * 109.47120 * 300.00007 * 18 17 16 46 46 H 1.08995 * 109.47021 * 59.99950 * 18 17 16 47 47 H 0.97009 * 119.99655 * 180.02562 * 22 21 19 48 48 H 1.08999 * 113.83099 * 222.10021 * 27 15 14 49 49 H 1.09000 * 113.94861 * 90.50930 * 27 15 14 50 50 H 1.09003 * 113.52457 * 268.66811 * 28 11 9 51 51 H 1.08997 * 113.52888 * 39.22997 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1283 1.1391 0.0000 4 6 3.6232 1.2512 -0.0006 5 6 4.2611 -0.0218 0.4682 6 6 3.6401 -1.1620 0.4685 7 6 2.2241 -1.3165 0.0006 8 1 2.2241 -1.7238 -1.0105 9 6 1.5029 -2.2715 0.9164 10 8 0.5243 -1.9012 1.5298 11 7 1.9453 -3.5371 1.0540 12 6 3.0499 -4.3375 0.4976 13 6 2.2000 -5.5725 0.7482 14 6 1.4057 -6.2478 -0.3671 15 7 2.4672 -7.2822 -0.3450 16 6 1.8900 -8.6306 -0.4265 17 6 1.7770 -9.0491 -1.8938 18 6 1.1765 -10.4537 -1.9787 19 6 1.0658 -10.8662 -3.4240 20 1 1.3916 -10.1939 -4.2039 21 6 0.5496 -12.1023 -3.7506 22 7 0.4535 -12.4624 -5.0118 23 14 -0.0134 -13.2654 -2.4015 24 1 -1.4476 -13.0211 -2.1040 25 1 0.1667 -14.6691 -2.8513 26 1 0.7933 -13.0305 -1.1770 27 6 2.8137 -6.9365 1.0541 28 6 1.5316 -4.7244 1.8217 29 1 -0.3633 0.0006 1.0277 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3634 -0.8903 -0.5133 32 1 1.5421 2.0462 -0.0004 33 1 3.9207 2.0647 0.6611 34 1 3.9646 1.4705 -1.0122 35 1 5.2814 0.0107 0.8206 36 1 4.1662 -2.0368 0.8210 37 1 3.2365 -4.1463 -0.5591 38 1 3.9577 -4.3045 1.1001 39 1 0.4281 -6.6132 -0.0526 40 1 1.3699 -5.6731 -1.2926 41 1 2.5327 -9.3336 0.1034 42 1 0.8994 -8.6300 0.0284 43 1 1.1344 -8.3461 -2.4237 44 1 2.7676 -9.0498 -2.3487 45 1 1.8196 -11.1565 -1.4489 46 1 0.1861 -10.4535 -1.5237 47 1 0.0899 -13.3319 -5.2415 48 1 3.8859 -6.9037 1.2470 49 1 2.2637 -7.5095 1.8006 50 1 2.0112 -4.8005 2.7975 51 1 0.4506 -4.8556 1.8712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277948825.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:20 Heat of formation + Delta-G solvation = 66.251427 kcal Electronic energy + Delta-G solvation = -27699.543011 eV Core-core repulsion = 23987.677212 eV Total energy + Delta-G solvation = -3711.865800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.61501 -40.13342 -38.13113 -37.01101 -34.14257 -33.23701 -32.13451 -31.69965 -29.64751 -27.89451 -26.85732 -26.51620 -26.42119 -24.78301 -24.04608 -21.51928 -20.84028 -20.06938 -19.82151 -18.57890 -17.44735 -16.98857 -16.70980 -16.46818 -16.00068 -15.77493 -15.51586 -15.37066 -14.84027 -14.57752 -14.40032 -14.09150 -13.72674 -13.61357 -13.53912 -13.37628 -12.94434 -12.73466 -12.60909 -12.47848 -12.38547 -12.33185 -12.04612 -11.60164 -11.53651 -11.33034 -11.08868 -10.98241 -10.79649 -10.73983 -10.65380 -10.14196 -9.92904 -9.76752 -9.70265 -9.55319 -9.17535 -9.05457 -8.85611 -8.68260 -8.53140 -6.03324 -4.01018 1.63007 1.92544 2.40723 2.52988 3.30096 3.37525 3.40732 3.63854 4.00774 4.07899 4.14899 4.20874 4.37166 4.45371 4.57883 4.65575 4.82078 4.90249 5.02215 5.07409 5.15108 5.16703 5.17633 5.25845 5.29481 5.31084 5.32843 5.36327 5.44548 5.45282 5.47124 5.54339 5.63823 5.66287 5.71223 5.72300 5.77095 5.87932 6.05271 6.11697 6.28208 6.33572 6.42034 6.53772 6.62422 6.64932 6.93631 7.11708 7.35307 7.41730 7.45423 7.80953 7.88654 8.56018 9.02433 9.59229 11.10234 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021608 B = 0.001946 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.491008 B =14383.488219 C =14590.752429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C -0.164 4.164 4 C -0.064 4.064 5 C -0.139 4.139 6 C -0.156 4.156 7 C -0.032 4.032 8 H 0.115 0.885 9 C 0.555 3.445 10 O -0.531 6.531 11 N -0.645 5.645 12 C 0.130 3.870 13 C -0.131 4.131 14 C 0.036 3.964 15 N -0.475 5.475 16 C 0.019 3.981 17 C -0.092 4.092 18 C -0.014 4.014 19 C -0.518 4.518 20 H 0.072 0.928 21 C 0.064 3.936 22 N -0.904 5.904 23 Si 0.881 3.119 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.266 1.266 27 C 0.022 3.978 28 C 0.117 3.883 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.039 0.961 43 H 0.051 0.949 44 H 0.061 0.939 45 H 0.015 0.985 46 H 0.008 0.992 47 H 0.262 0.738 48 H 0.092 0.908 49 H 0.075 0.925 50 H 0.087 0.913 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.544 26.215 15.327 31.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.099 4.099 3 C -0.182 4.182 4 C -0.100 4.100 5 C -0.157 4.157 6 C -0.174 4.174 7 C -0.052 4.052 8 H 0.132 0.868 9 C 0.344 3.656 10 O -0.407 6.407 11 N -0.380 5.380 12 C 0.007 3.993 13 C -0.132 4.132 14 C -0.093 4.093 15 N -0.197 5.197 16 C -0.109 4.109 17 C -0.130 4.130 18 C -0.052 4.052 19 C -0.556 4.556 20 H 0.090 0.910 21 C -0.137 4.137 22 N -0.543 5.543 23 Si 0.708 3.292 24 H -0.204 1.204 25 H -0.214 1.214 26 H -0.191 1.191 27 C -0.107 4.107 28 C -0.006 4.006 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.033 0.967 46 H 0.026 0.974 47 H 0.072 0.928 48 H 0.111 0.889 49 H 0.094 0.906 50 H 0.105 0.895 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.373 26.481 15.006 31.318 hybrid contribution -0.907 -1.006 1.209 1.815 sum 6.466 25.475 16.215 30.882 Atomic orbital electron populations 1.20886 0.91091 1.01174 1.03183 1.20554 0.96450 0.92627 1.00264 1.21921 0.95615 0.97448 1.03233 1.19272 0.92619 0.96354 1.01760 1.22225 0.99879 0.94234 0.99379 1.21883 0.94175 0.98784 1.02549 1.18818 0.93037 0.93573 0.99799 0.86786 1.19919 0.83925 0.79492 0.82220 1.90704 1.27021 1.75197 1.47825 1.49664 1.31856 1.09641 1.46880 1.22599 0.90616 0.85488 1.00561 1.23044 0.98630 0.93850 0.97724 1.23636 0.94464 0.93491 0.97660 1.68615 1.27654 1.03551 1.19838 1.22869 0.97615 0.90001 1.00411 1.21342 1.01286 0.98170 0.92183 1.19567 0.95199 0.92525 0.97900 1.21147 1.41525 1.01763 0.91188 0.91028 1.25053 0.95360 0.97976 0.95270 1.69921 1.46391 1.21346 1.16675 0.86766 0.79355 0.80211 0.82849 1.20386 1.21405 1.19077 1.23649 1.01862 0.92711 0.92501 1.22826 1.01391 0.80857 0.95556 0.89946 0.92850 0.92328 0.86771 0.90044 0.89393 0.86688 0.86762 0.89495 0.89151 0.90471 0.89068 0.91243 0.94240 0.93003 0.92062 0.96716 0.97370 0.92785 0.88928 0.90636 0.89458 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 8.18 36.01 0.29 -0.78 16 2 C -0.10 -0.96 5.37 -101.09 -0.54 -1.50 16 3 C -0.16 -1.34 9.49 -36.06 -0.34 -1.68 16 4 C -0.06 -0.41 6.27 -29.80 -0.19 -0.60 16 5 C -0.14 -0.97 9.92 -36.08 -0.36 -1.33 16 6 C -0.16 -1.23 8.84 -36.07 -0.32 -1.55 16 7 C -0.03 -0.30 2.77 -94.83 -0.26 -0.56 16 8 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 9 C 0.55 6.35 7.08 -10.99 -0.08 6.27 16 10 O -0.53 -7.76 14.11 5.56 0.08 -7.69 16 11 N -0.64 -6.19 3.62 -185.23 -0.67 -6.86 16 12 C 0.13 0.98 6.82 -7.64 -0.05 0.93 16 13 C -0.13 -1.13 1.46 -155.99 -0.23 -1.36 16 14 C 0.04 0.40 7.78 -3.26 -0.03 0.38 16 15 N -0.47 -6.03 6.15 -245.46 -1.51 -7.54 16 16 C 0.02 0.29 4.80 -3.82 -0.02 0.27 16 17 C -0.09 -1.80 5.46 -26.73 -0.15 -1.95 16 18 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 19 C -0.52 -14.90 9.66 -34.44 -0.33 -15.24 16 20 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 21 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 22 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 23 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 27 C 0.02 0.20 7.78 -3.27 -0.03 0.18 16 28 C 0.12 1.01 8.44 -7.51 -0.06 0.95 16 29 H 0.08 0.96 6.98 -51.93 -0.36 0.60 16 30 H 0.05 0.44 7.95 -51.93 -0.41 0.03 16 31 H 0.06 0.63 7.75 -51.93 -0.40 0.22 16 32 H 0.11 0.80 7.88 -52.49 -0.41 0.38 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.11 0.79 6.66 -52.49 -0.35 0.44 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.52 8.00 -51.93 -0.42 0.10 16 39 H 0.08 0.88 7.48 -51.93 -0.39 0.49 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 42 H 0.04 0.58 7.39 -51.93 -0.38 0.20 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 46 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 47 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 48 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.08 0.65 7.93 -51.93 -0.41 0.24 16 50 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 402.33 15.07 6.06 6.06 Total: -1.00 -33.46 402.33 -11.79 -45.25 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -8.96 Total: -2.81 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -2.89 Total: -16.22 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: -1.41 Total: -41.72 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.08 Total: -7.69 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.46 -11.79 -45.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277948825.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.506 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds