Wall clock time and date at job start Tue Mar 31 2020 15:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29751 * 118.60558 * 2 1 4 4 C 1.49910 * 122.89292 * 180.02562 * 3 2 1 5 5 C 1.49910 * 111.14539 * 340.38950 * 4 3 2 6 6 C 1.29827 * 122.83948 * 19.59023 * 5 4 3 7 7 C 1.49910 * 118.57604 * 179.97438 * 2 1 3 8 8 H 1.09001 * 109.13630 * 79.10689 * 7 2 1 9 9 C 1.50696 * 109.13789 * 319.98364 * 7 2 1 10 10 O 1.21281 * 120.00325 * 358.30668 * 9 7 2 11 11 N 1.34780 * 120.00261 * 178.30596 * 9 7 2 12 12 C 1.47317 * 135.86905 * 359.63429 * 11 9 7 13 13 C 1.51997 * 87.70183 * 206.05612 * 12 11 9 14 14 C 1.52676 * 121.99823 * 100.01801 * 13 12 11 15 15 N 1.48228 * 85.71149 * 104.28216 * 14 13 12 16 16 C 1.46899 * 110.99813 * 136.71987 * 15 14 13 17 17 C 1.53003 * 109.46749 * 90.27889 * 16 15 14 18 18 C 1.53001 * 109.47039 * 179.97438 * 17 16 15 19 19 C 1.50704 * 109.47085 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99968 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00091 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99917 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99739 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47028 * 90.00266 * 23 21 19 25 25 H 1.48504 * 109.46770 * 209.99797 * 23 21 19 26 26 H 1.48500 * 109.47329 * 329.99973 * 23 21 19 27 27 C 1.48222 * 91.07238 * 23.70068 * 15 14 13 28 28 C 1.47315 * 135.87637 * 179.97438 * 11 9 7 29 29 H 1.08998 * 109.46833 * 270.03483 * 1 2 3 30 30 H 1.08999 * 109.46768 * 30.03103 * 1 2 3 31 31 H 1.09000 * 109.47341 * 150.03228 * 1 2 3 32 32 H 1.07997 * 118.52292 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.13547 * 219.97625 * 4 3 2 34 34 H 1.08998 * 109.13364 * 100.79707 * 4 3 2 35 35 H 1.08001 * 118.58488 * 199.57096 * 5 4 3 36 36 H 1.08002 * 118.58481 * 179.97438 * 6 5 4 37 37 H 1.09000 * 113.52988 * 320.70056 * 12 11 9 38 38 H 1.09004 * 113.53187 * 91.33162 * 12 11 9 39 39 H 1.08996 * 113.83143 * 218.47583 * 14 13 12 40 40 H 1.08997 * 113.83274 * 350.08416 * 14 13 12 41 41 H 1.09002 * 109.47155 * 210.27739 * 16 15 14 42 42 H 1.09002 * 109.47563 * 330.28477 * 16 15 14 43 43 H 1.08993 * 109.47273 * 300.00060 * 17 16 15 44 44 H 1.09002 * 109.47058 * 60.00291 * 17 16 15 45 45 H 1.09002 * 109.47120 * 300.00007 * 18 17 16 46 46 H 1.08995 * 109.47021 * 59.99950 * 18 17 16 47 47 H 0.97009 * 119.99655 * 180.02562 * 22 21 19 48 48 H 1.08999 * 113.83099 * 222.10021 * 27 15 14 49 49 H 1.09000 * 113.94861 * 90.50930 * 27 15 14 50 50 H 1.09003 * 113.52457 * 268.66811 * 28 11 9 51 51 H 1.08997 * 113.52888 * 39.22997 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1283 1.1391 0.0000 4 6 3.6232 1.2512 -0.0006 5 6 4.2611 -0.0218 0.4682 6 6 3.6401 -1.1620 0.4685 7 6 2.2241 -1.3165 0.0006 8 1 2.2241 -1.7238 -1.0105 9 6 1.5029 -2.2715 0.9164 10 8 0.5243 -1.9012 1.5298 11 7 1.9453 -3.5371 1.0540 12 6 3.0499 -4.3375 0.4976 13 6 2.2000 -5.5725 0.7482 14 6 1.4057 -6.2478 -0.3671 15 7 2.4672 -7.2822 -0.3450 16 6 1.8900 -8.6306 -0.4265 17 6 1.7770 -9.0491 -1.8938 18 6 1.1765 -10.4537 -1.9787 19 6 1.0658 -10.8662 -3.4240 20 1 1.3916 -10.1939 -4.2039 21 6 0.5496 -12.1023 -3.7506 22 7 0.4535 -12.4624 -5.0118 23 14 -0.0134 -13.2654 -2.4015 24 1 -1.4476 -13.0211 -2.1040 25 1 0.1667 -14.6691 -2.8513 26 1 0.7933 -13.0305 -1.1770 27 6 2.8137 -6.9365 1.0541 28 6 1.5316 -4.7244 1.8217 29 1 -0.3633 0.0006 1.0277 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3634 -0.8903 -0.5133 32 1 1.5421 2.0462 -0.0004 33 1 3.9207 2.0647 0.6611 34 1 3.9646 1.4705 -1.0122 35 1 5.2814 0.0107 0.8206 36 1 4.1662 -2.0368 0.8210 37 1 3.2365 -4.1463 -0.5591 38 1 3.9577 -4.3045 1.1001 39 1 0.4281 -6.6132 -0.0526 40 1 1.3699 -5.6731 -1.2926 41 1 2.5327 -9.3336 0.1034 42 1 0.8994 -8.6300 0.0284 43 1 1.1344 -8.3461 -2.4237 44 1 2.7676 -9.0498 -2.3487 45 1 1.8196 -11.1565 -1.4489 46 1 0.1861 -10.4535 -1.5237 47 1 0.0899 -13.3319 -5.2415 48 1 3.8859 -6.9037 1.2470 49 1 2.2637 -7.5095 1.8006 50 1 2.0112 -4.8005 2.7975 51 1 0.4506 -4.8556 1.8712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277948825.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:18 Heat of formation + Delta-G solvation = 45.025782 kcal Electronic energy + Delta-G solvation = -27700.463424 eV Core-core repulsion = 23987.677212 eV Total energy + Delta-G solvation = -3712.786213 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.38867 -40.89760 -38.88455 -37.90955 -35.90957 -34.03420 -33.79397 -32.51432 -30.77922 -29.04989 -27.78012 -27.25755 -27.16743 -25.91442 -25.00254 -22.91667 -21.70890 -21.44071 -20.60533 -19.30338 -18.88731 -18.14424 -17.69557 -17.26311 -16.66036 -16.56955 -16.49829 -16.39112 -15.99633 -15.70238 -15.57017 -14.98418 -14.79976 -14.69092 -14.40221 -14.22625 -14.15391 -13.88108 -13.68743 -13.42487 -13.32288 -13.06916 -13.00937 -12.96187 -12.71854 -12.65050 -12.21077 -12.13934 -11.83664 -11.75016 -11.58263 -11.42111 -11.38105 -11.31518 -11.22356 -10.87161 -10.76461 -10.36162 -9.85302 -9.64169 -9.46412 -8.29296 -6.33730 1.03604 1.30591 1.35692 1.37986 1.50190 1.61576 1.82476 2.36415 2.81198 3.05795 3.27002 3.37026 3.42141 3.56804 3.73712 3.85282 4.07986 4.12286 4.22948 4.28927 4.30596 4.32065 4.41968 4.46792 4.50083 4.57338 4.60097 4.64527 4.68868 4.71807 4.76732 4.78319 4.81040 4.84866 4.91321 4.93216 4.96576 4.99738 5.01667 5.06916 5.17802 5.19203 5.33179 5.41498 5.55227 5.65463 5.68409 5.78494 5.83940 5.98535 6.10399 6.30422 6.65979 6.74792 7.07323 7.30709 8.87759 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021608 B = 0.001946 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.491008 B =14383.488219 C =14590.752429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.130 4.130 3 C -0.154 4.154 4 C -0.069 4.069 5 C -0.135 4.135 6 C -0.172 4.172 7 C -0.028 4.028 8 H 0.115 0.885 9 C 0.548 3.452 10 O -0.574 6.574 11 N -0.648 5.648 12 C 0.135 3.865 13 C -0.117 4.117 14 C 0.027 3.973 15 N -0.492 5.492 16 C 0.032 3.968 17 C -0.084 4.084 18 C -0.011 4.011 19 C -0.534 4.534 20 H 0.027 0.973 21 C -0.001 4.001 22 N -0.953 5.953 23 Si 0.956 3.044 24 H -0.267 1.267 25 H -0.284 1.284 26 H -0.242 1.242 27 C 0.032 3.968 28 C 0.116 3.884 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.125 0.875 37 H 0.088 0.912 38 H 0.120 0.880 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.046 0.954 43 H 0.037 0.963 44 H 0.046 0.954 45 H 0.023 0.977 46 H 0.017 0.983 47 H 0.266 0.734 48 H 0.113 0.887 49 H 0.088 0.912 50 H 0.110 0.890 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.275 26.758 18.096 33.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.130 4.130 3 C -0.172 4.172 4 C -0.105 4.105 5 C -0.152 4.152 6 C -0.191 4.191 7 C -0.048 4.048 8 H 0.132 0.868 9 C 0.338 3.662 10 O -0.453 6.453 11 N -0.382 5.382 12 C 0.013 3.987 13 C -0.118 4.118 14 C -0.101 4.101 15 N -0.214 5.214 16 C -0.097 4.097 17 C -0.122 4.122 18 C -0.049 4.049 19 C -0.572 4.572 20 H 0.045 0.955 21 C -0.198 4.198 22 N -0.594 5.594 23 Si 0.779 3.221 24 H -0.193 1.193 25 H -0.210 1.210 26 H -0.166 1.166 27 C -0.097 4.097 28 C -0.007 4.007 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.142 0.858 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.155 0.845 36 H 0.143 0.857 37 H 0.106 0.894 38 H 0.138 0.862 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.041 0.959 46 H 0.035 0.965 47 H 0.075 0.925 48 H 0.131 0.869 49 H 0.106 0.894 50 H 0.128 0.872 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.137 27.027 17.777 33.615 hybrid contribution -1.421 -1.077 0.231 1.798 sum 7.716 25.950 18.008 32.515 Atomic orbital electron populations 1.20770 0.92085 1.01049 1.01719 1.20644 0.96097 0.93574 1.02697 1.22231 0.97005 0.97192 1.00736 1.19422 0.91143 0.96851 1.03071 1.22516 1.00752 0.93899 0.98069 1.21935 0.93366 0.99821 1.03944 1.18786 0.93856 0.92882 0.99292 0.86774 1.20367 0.83535 0.80171 0.82092 1.90679 1.28826 1.76169 1.49662 1.49754 1.32379 1.09346 1.46753 1.22780 0.90808 0.83869 1.01244 1.22814 0.98261 0.94167 0.96582 1.23661 0.94484 0.93639 0.98363 1.68554 1.27840 1.02195 1.22824 1.22620 0.98552 0.91817 0.96699 1.21159 0.99646 0.95745 0.95619 1.19515 0.96081 0.94891 0.94381 1.21532 1.41203 1.01374 0.93091 0.95507 1.26117 0.95428 1.00122 0.98104 1.70088 1.47757 1.22210 1.19365 0.85578 0.79454 0.77239 0.79869 1.19253 1.20978 1.16558 1.23743 1.03277 0.92182 0.90495 1.22943 1.00921 0.80348 0.96497 0.92140 0.91393 0.93935 0.85824 0.88233 0.87871 0.84539 0.85727 0.89394 0.86217 0.90853 0.90191 0.90288 0.93558 0.94429 0.93526 0.95902 0.96459 0.92533 0.86919 0.89433 0.87193 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.12 8.18 71.24 0.58 -1.54 16 2 C -0.13 -2.51 5.37 -15.45 -0.08 -2.59 16 3 C -0.15 -2.30 9.49 26.69 0.25 -2.05 16 4 C -0.07 -0.71 6.27 28.61 0.18 -0.53 16 5 C -0.13 -1.51 9.92 26.61 0.26 -1.25 16 6 C -0.17 -2.42 8.84 26.61 0.24 -2.18 16 7 C -0.03 -0.51 2.77 -13.52 -0.04 -0.55 16 8 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 9 C 0.55 12.62 7.08 87.66 0.62 13.24 16 10 O -0.57 -17.49 14.11 -3.03 -0.04 -17.53 16 11 N -0.65 -11.77 3.62 -858.31 -3.11 -14.87 16 12 C 0.13 1.71 6.82 83.60 0.57 2.28 16 13 C -0.12 -1.78 1.46 -52.89 -0.08 -1.85 16 14 C 0.03 0.59 7.78 85.94 0.67 1.26 16 15 N -0.49 -11.62 6.15 -930.51 -5.73 -17.34 16 16 C 0.03 0.90 4.80 86.30 0.41 1.32 16 17 C -0.08 -3.28 5.46 30.60 0.17 -3.11 16 18 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 19 C -0.53 -31.56 9.66 25.60 0.25 -31.31 16 20 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 21 C 0.00 -0.09 5.47 84.65 0.46 0.38 16 22 N -0.95 -60.90 13.96 21.45 0.30 -60.60 16 23 Si 0.96 44.45 27.47 68.60 1.88 46.33 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 26 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 27 C 0.03 0.48 7.78 85.94 0.67 1.15 16 28 C 0.12 1.81 8.44 83.69 0.71 2.52 16 29 H 0.06 1.52 6.98 -2.39 -0.02 1.51 16 30 H 0.07 1.15 7.95 -2.39 -0.02 1.13 16 31 H 0.04 0.99 7.75 -2.39 -0.02 0.97 16 32 H 0.12 1.55 7.88 -2.91 -0.02 1.52 16 33 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.14 0.94 8.06 -2.91 -0.02 0.92 16 36 H 0.12 1.41 6.66 -2.91 -0.02 1.39 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.12 0.89 8.00 -2.38 -0.02 0.88 16 39 H 0.07 1.64 7.48 -2.39 -0.02 1.62 16 40 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.08 2.12 8.08 -2.39 -0.02 2.10 16 42 H 0.05 1.26 7.39 -2.39 -0.02 1.25 16 43 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 46 H 0.02 0.77 7.57 -2.39 -0.02 0.76 16 47 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 48 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.09 1.17 7.93 -2.39 -0.02 1.15 16 50 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -75.86 402.33 0.10 -75.76 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.83 Total: 13.47 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 5.96 Total: -25.21 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -8.54 Total: -92.82 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.04 Total: -17.53 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -75.86 0.10 -75.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277948825.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.783 kcal (2) G-P(sol) polarization free energy of solvation -75.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds