Wall clock time and date at job start Tue Mar 31 2020 15:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.29827 * 118.57911 * 2 1 4 4 C 1.49914 * 122.83895 * 179.97438 * 3 2 1 5 5 C 1.49905 * 111.18720 * 19.57645 * 4 3 2 6 6 C 1.29825 * 122.84209 * 340.47284 * 5 4 3 7 7 C 1.49910 * 118.58461 * 180.02562 * 2 1 3 8 8 H 1.08994 * 109.08826 * 280.86518 * 7 2 1 9 9 C 1.50700 * 109.13334 * 40.01656 * 7 2 1 10 10 O 1.21288 * 119.99926 * 24.39076 * 9 7 2 11 11 N 1.34776 * 120.00199 * 204.38999 * 9 7 2 12 12 C 1.47679 * 121.55716 * 175.13846 * 11 9 7 13 13 C 1.54187 * 106.99081 * 219.35244 * 12 11 9 14 14 H 1.09004 * 115.13196 * 159.10867 * 13 12 11 15 15 C 1.54230 * 110.87774 * 293.23146 * 13 12 11 16 16 C 1.54236 * 85.37612 * 81.32182 * 15 13 12 17 17 H 1.08999 * 115.94853 * 144.96599 * 16 15 13 18 18 C 1.47683 * 121.54979 * 355.13741 * 11 9 7 19 19 N 1.48496 * 84.84154 * 28.52260 * 16 15 13 20 20 C 1.46907 * 110.99703 * 218.00254 * 19 16 15 21 21 C 1.52997 * 109.46718 * 214.59672 * 20 19 16 22 22 C 1.53005 * 109.46940 * 184.20027 * 21 20 19 23 23 C 1.50697 * 109.47407 * 178.13336 * 22 21 20 24 24 H 1.08007 * 119.99821 * 359.97438 * 23 22 21 25 25 C 1.37876 * 120.00552 * 180.02562 * 23 22 21 26 26 N 1.31517 * 119.99487 * 359.97438 * 25 23 22 27 27 Si 1.86792 * 120.00304 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47434 * 59.99601 * 27 25 23 29 29 H 1.48507 * 109.47274 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47193 * 299.99491 * 27 25 23 31 31 H 1.09007 * 109.47329 * 275.43084 * 1 2 3 32 32 H 1.09004 * 109.47659 * 35.43410 * 1 2 3 33 33 H 1.08997 * 109.47407 * 155.43591 * 1 2 3 34 34 H 1.08001 * 118.58378 * 0.02562 * 3 2 1 35 35 H 1.08989 * 109.13874 * 259.12830 * 4 3 2 36 36 H 1.09002 * 109.13247 * 140.00944 * 4 3 2 37 37 H 1.08004 * 118.58544 * 160.45714 * 5 4 3 38 38 H 1.07994 * 118.59046 * 179.97438 * 6 5 4 39 39 H 1.08998 * 109.95391 * 99.97823 * 12 11 9 40 40 H 1.09002 * 110.02112 * 338.76352 * 12 11 9 41 41 H 1.09003 * 113.88878 * 327.21409 * 15 13 12 42 42 H 1.08996 * 113.89241 * 195.43429 * 15 13 12 43 43 H 1.08999 * 109.95413 * 21.27923 * 18 11 9 44 44 H 1.09002 * 109.95062 * 260.01757 * 18 11 9 45 45 H 1.09007 * 109.46818 * 334.59614 * 20 19 16 46 46 H 1.08998 * 109.47487 * 94.59631 * 20 19 16 47 47 H 1.08993 * 109.47513 * 304.19764 * 21 20 19 48 48 H 1.09001 * 109.47422 * 64.20517 * 21 20 19 49 49 H 1.09003 * 109.47202 * 298.13647 * 22 21 20 50 50 H 1.09000 * 109.46877 * 58.13643 * 22 21 20 51 51 H 0.96995 * 119.99891 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1280 1.1401 0.0000 4 6 3.6230 1.2514 0.0006 5 6 4.2613 -0.0217 -0.4672 6 6 3.6402 -1.1617 -0.4682 7 6 2.2242 -1.3164 -0.0006 8 1 2.2242 -1.7227 1.0108 9 6 1.5030 -2.2714 -0.9165 10 8 0.8145 -1.8433 -1.8185 11 7 1.6232 -3.6012 -0.7333 12 6 0.8503 -4.5657 -1.5416 13 6 0.4104 -5.6984 -0.5924 14 1 -0.4418 -6.2852 -0.9356 15 6 1.6284 -6.5039 -0.0963 16 6 1.8095 -5.3628 0.9254 17 1 2.1794 -5.6564 1.9078 18 6 2.5341 -4.1618 0.2850 19 7 0.3381 -5.2024 0.8054 20 6 -0.0414 -3.7836 0.8415 21 6 -1.3864 -3.6336 1.5551 22 6 -1.8320 -2.1709 1.5009 23 6 -3.1783 -2.0310 2.1635 24 1 -3.6674 -2.8987 2.5811 25 6 -3.7862 -0.7956 2.2358 26 7 -3.1908 0.2609 1.7268 27 14 -5.4545 -0.6222 3.0577 28 1 -5.3561 -1.0569 4.4742 29 1 -5.8872 0.7975 3.0051 30 1 -6.4466 -1.4690 2.3478 31 1 -0.3634 0.0973 1.0231 32 1 -0.3634 0.8373 -0.5958 33 1 -0.3634 -0.9346 -0.4272 34 1 1.5424 2.0475 0.0004 35 1 3.9645 1.4719 1.0118 36 1 3.9209 2.0646 -0.6613 37 1 5.2819 0.0108 -0.8190 38 1 4.1662 -2.0365 -0.8207 39 1 1.4758 -4.9694 -2.3377 40 1 -0.0256 -4.0772 -1.9687 41 1 2.4361 -6.5764 -0.8247 42 1 1.3702 -7.4625 0.3537 43 1 2.7508 -3.4103 1.0443 44 1 3.4594 -4.4937 -0.1859 45 1 0.7199 -3.2175 1.3782 46 1 -0.1260 -3.4041 -0.1768 47 1 -2.1309 -4.2587 1.0622 48 1 -1.2826 -3.9435 2.5950 49 1 -1.1040 -1.5497 2.0226 50 1 -1.9038 -1.8512 0.4613 51 1 -3.6182 1.1301 1.7779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277949986.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:47 Heat of formation + Delta-G solvation = 80.624728 kcal Electronic energy + Delta-G solvation = -30823.142078 eV Core-core repulsion = 27111.899551 eV Total energy + Delta-G solvation = -3711.242526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.31607 -39.70022 -37.50608 -34.40223 -34.19086 -32.58529 -32.04613 -31.46387 -30.10512 -29.00790 -26.96470 -25.71384 -25.27423 -24.01621 -22.82760 -22.26498 -20.49887 -20.08753 -20.00975 -18.18023 -17.46359 -16.83010 -16.24758 -16.02271 -15.55459 -15.30231 -15.07483 -14.83484 -14.76171 -14.35565 -14.25598 -13.94414 -13.26646 -13.14110 -13.02720 -12.95369 -12.61194 -12.34656 -12.27113 -12.01856 -11.86302 -11.67242 -11.54149 -11.49655 -11.06928 -10.88322 -10.81435 -10.60561 -10.51710 -10.41778 -10.35458 -10.21567 -9.82221 -9.52150 -9.40612 -9.23644 -9.10333 -8.94665 -8.30083 -8.22211 -7.93492 -5.90410 -3.91211 2.01905 2.48252 2.73275 2.91908 3.38594 3.42653 3.45652 3.91405 4.26379 4.38293 4.51302 4.53898 4.62889 4.72374 4.88954 4.96764 5.03134 5.10550 5.10775 5.24696 5.41356 5.44802 5.45401 5.47616 5.57562 5.61341 5.67223 5.68192 5.71683 5.75874 5.78846 5.95216 6.08967 6.19685 6.23480 6.24905 6.40556 6.50369 6.52174 6.68228 6.77694 6.83798 6.90754 6.93495 7.17797 7.26753 7.31680 7.32303 7.42935 7.78743 7.95968 8.10779 8.23380 8.55167 9.14188 9.71486 11.20013 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009461 B = 0.005294 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.867316 B = 5287.496186 C = 7610.501674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.085 4.085 3 C -0.179 4.179 4 C -0.060 4.060 5 C -0.136 4.136 6 C -0.154 4.154 7 C -0.035 4.035 8 H 0.108 0.892 9 C 0.539 3.461 10 O -0.514 6.514 11 N -0.623 5.623 12 C 0.104 3.896 13 C 0.010 3.990 14 H 0.116 0.884 15 C -0.131 4.131 16 C 0.006 3.994 17 H 0.116 0.884 18 C 0.097 3.903 19 N -0.455 5.455 20 C 0.008 3.992 21 C -0.103 4.103 22 C 0.026 3.974 23 C -0.518 4.518 24 H 0.051 0.949 25 C 0.059 3.941 26 N -0.889 5.889 27 Si 0.887 3.113 28 H -0.279 1.279 29 H -0.288 1.288 30 H -0.279 1.279 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.045 0.955 48 H 0.044 0.956 49 H 0.013 0.987 50 H 0.017 0.983 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.605 -7.607 -4.828 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.086 4.086 3 C -0.197 4.197 4 C -0.096 4.096 5 C -0.154 4.154 6 C -0.173 4.173 7 C -0.056 4.056 8 H 0.126 0.874 9 C 0.328 3.672 10 O -0.388 6.388 11 N -0.360 5.360 12 C -0.019 4.019 13 C -0.101 4.101 14 H 0.134 0.866 15 C -0.168 4.168 16 C -0.104 4.104 17 H 0.134 0.866 18 C -0.027 4.027 19 N -0.177 5.177 20 C -0.119 4.119 21 C -0.142 4.142 22 C -0.012 4.012 23 C -0.557 4.557 24 H 0.069 0.931 25 C -0.142 4.142 26 N -0.528 5.528 27 Si 0.716 3.284 28 H -0.204 1.204 29 H -0.214 1.214 30 H -0.204 1.204 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.133 0.867 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.094 0.906 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.032 0.968 50 H 0.036 0.964 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 17.727 -7.427 -4.876 19.829 hybrid contribution -0.438 0.590 0.009 0.735 sum 17.289 -6.837 -4.867 19.218 Atomic orbital electron populations 1.21194 0.88800 1.03781 1.03972 1.20749 0.97477 0.91945 0.98400 1.21840 0.94931 0.97801 1.05144 1.19230 0.93219 0.95900 1.01299 1.22212 0.99551 0.94445 0.99148 1.21769 0.94144 0.98573 1.02790 1.18924 0.92924 0.94467 0.99277 0.87437 1.20159 0.80885 0.81322 0.84879 1.90726 1.39269 1.76540 1.32281 1.48673 1.43753 1.05595 1.37944 1.22101 0.96835 0.89713 0.93280 1.24232 0.98968 0.95913 0.90945 0.86609 1.23611 0.97292 0.98058 0.97853 1.24256 0.91581 0.94731 0.99882 0.86586 1.22399 0.92615 0.96681 0.91029 1.69363 1.11463 1.19599 1.17268 1.23319 0.98782 0.88198 1.01649 1.21641 0.93648 1.00364 0.98519 1.19170 0.95652 0.89369 0.96983 1.21206 1.03812 0.93571 1.37102 0.93078 1.24964 0.97419 0.96095 0.95689 1.69930 1.38274 0.99067 1.45575 0.86739 0.84863 0.76811 0.80013 1.20441 1.21400 1.20431 0.89269 0.92503 0.90417 0.86747 0.89814 0.90393 0.87007 0.87239 0.90816 0.88491 0.91226 0.88756 0.89090 0.90565 0.92978 0.90905 0.93641 0.93677 0.96847 0.96448 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 8.52 36.00 0.31 -2.23 16 2 C -0.09 -1.47 5.23 -101.12 -0.53 -1.99 16 3 C -0.18 -2.70 9.50 -36.08 -0.34 -3.04 16 4 C -0.06 -0.69 6.27 -29.80 -0.19 -0.88 16 5 C -0.14 -1.49 9.92 -36.08 -0.36 -1.85 16 6 C -0.15 -1.86 8.88 -36.07 -0.32 -2.18 16 7 C -0.04 -0.53 2.07 -94.83 -0.20 -0.72 16 8 H 0.11 1.52 5.62 -51.93 -0.29 1.23 16 9 C 0.54 8.76 3.76 -10.99 -0.04 8.71 16 10 O -0.51 -10.34 13.89 5.55 0.08 -10.26 16 11 N -0.62 -8.30 1.67 -170.31 -0.28 -8.58 16 12 C 0.10 1.32 5.37 -2.78 -0.01 1.31 16 13 C 0.01 0.12 5.42 -65.78 -0.36 -0.24 16 14 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 15 C -0.13 -1.19 7.49 -25.65 -0.19 -1.39 16 16 C 0.01 0.06 5.34 -65.78 -0.35 -0.29 16 17 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 18 C 0.10 0.99 5.09 -2.77 -0.01 0.97 16 19 N -0.46 -6.63 6.18 -229.19 -1.42 -8.05 16 20 C 0.01 0.15 3.36 -3.82 -0.01 0.14 16 21 C -0.10 -2.28 5.48 -26.73 -0.15 -2.43 16 22 C 0.03 0.67 4.12 -27.88 -0.11 0.56 16 23 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 24 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 25 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 26 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 27 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 28 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 30 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 31 H 0.09 2.09 6.86 -51.93 -0.36 1.73 16 32 H 0.06 1.20 8.04 -51.93 -0.42 0.78 16 33 H 0.08 1.77 4.04 -51.93 -0.21 1.56 16 34 H 0.11 1.71 7.94 -52.49 -0.42 1.29 16 35 H 0.08 0.86 8.14 -51.94 -0.42 0.44 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.11 0.95 8.06 -52.48 -0.42 0.53 16 38 H 0.11 1.11 8.05 -52.49 -0.42 0.68 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 1.48 6.98 -51.93 -0.36 1.12 16 41 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.91 5.43 -51.93 -0.28 0.63 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.92 5.23 -51.93 -0.27 0.64 16 46 H 0.07 1.38 3.34 -51.93 -0.17 1.21 16 47 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 49 H 0.01 0.36 6.95 -51.93 -0.36 0.00 16 50 H 0.02 0.49 6.63 -51.93 -0.34 0.14 16 51 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 376.84 15.07 5.68 5.68 Total: -1.00 -32.69 376.84 -11.61 -44.29 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -8.10 Total: 4.57 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -3.28 Total: -19.22 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: -0.96 Total: -42.15 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.69 -11.61 -44.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277949986.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.919 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds