Wall clock time and date at job start Tue Mar 31 2020 15:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.29827 * 118.57911 * 2 1 4 4 C 1.49914 * 122.83895 * 179.97438 * 3 2 1 5 5 C 1.49905 * 111.18720 * 19.57645 * 4 3 2 6 6 C 1.29825 * 122.84209 * 340.47284 * 5 4 3 7 7 C 1.49910 * 118.58461 * 180.02562 * 2 1 3 8 8 H 1.08994 * 109.08826 * 280.86518 * 7 2 1 9 9 C 1.50700 * 109.13334 * 40.01656 * 7 2 1 10 10 O 1.21288 * 119.99926 * 24.39076 * 9 7 2 11 11 N 1.34776 * 120.00199 * 204.38999 * 9 7 2 12 12 C 1.47679 * 121.55716 * 175.13846 * 11 9 7 13 13 C 1.54187 * 106.99081 * 219.35244 * 12 11 9 14 14 H 1.09004 * 115.13196 * 159.10867 * 13 12 11 15 15 C 1.54230 * 110.87774 * 293.23146 * 13 12 11 16 16 C 1.54236 * 85.37612 * 81.32182 * 15 13 12 17 17 H 1.08999 * 115.94853 * 144.96599 * 16 15 13 18 18 C 1.47683 * 121.54979 * 355.13741 * 11 9 7 19 19 N 1.48496 * 84.84154 * 28.52260 * 16 15 13 20 20 C 1.46907 * 110.99703 * 218.00254 * 19 16 15 21 21 C 1.52997 * 109.46718 * 214.59672 * 20 19 16 22 22 C 1.53005 * 109.46940 * 184.20027 * 21 20 19 23 23 C 1.50697 * 109.47407 * 178.13336 * 22 21 20 24 24 H 1.08007 * 119.99821 * 359.97438 * 23 22 21 25 25 C 1.37876 * 120.00552 * 180.02562 * 23 22 21 26 26 N 1.31517 * 119.99487 * 359.97438 * 25 23 22 27 27 Si 1.86792 * 120.00304 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47434 * 59.99601 * 27 25 23 29 29 H 1.48507 * 109.47274 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47193 * 299.99491 * 27 25 23 31 31 H 1.09007 * 109.47329 * 275.43084 * 1 2 3 32 32 H 1.09004 * 109.47659 * 35.43410 * 1 2 3 33 33 H 1.08997 * 109.47407 * 155.43591 * 1 2 3 34 34 H 1.08001 * 118.58378 * 0.02562 * 3 2 1 35 35 H 1.08989 * 109.13874 * 259.12830 * 4 3 2 36 36 H 1.09002 * 109.13247 * 140.00944 * 4 3 2 37 37 H 1.08004 * 118.58544 * 160.45714 * 5 4 3 38 38 H 1.07994 * 118.59046 * 179.97438 * 6 5 4 39 39 H 1.08998 * 109.95391 * 99.97823 * 12 11 9 40 40 H 1.09002 * 110.02112 * 338.76352 * 12 11 9 41 41 H 1.09003 * 113.88878 * 327.21409 * 15 13 12 42 42 H 1.08996 * 113.89241 * 195.43429 * 15 13 12 43 43 H 1.08999 * 109.95413 * 21.27923 * 18 11 9 44 44 H 1.09002 * 109.95062 * 260.01757 * 18 11 9 45 45 H 1.09007 * 109.46818 * 334.59614 * 20 19 16 46 46 H 1.08998 * 109.47487 * 94.59631 * 20 19 16 47 47 H 1.08993 * 109.47513 * 304.19764 * 21 20 19 48 48 H 1.09001 * 109.47422 * 64.20517 * 21 20 19 49 49 H 1.09003 * 109.47202 * 298.13647 * 22 21 20 50 50 H 1.09000 * 109.46877 * 58.13643 * 22 21 20 51 51 H 0.96995 * 119.99891 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1280 1.1401 0.0000 4 6 3.6230 1.2514 0.0006 5 6 4.2613 -0.0217 -0.4672 6 6 3.6402 -1.1617 -0.4682 7 6 2.2242 -1.3164 -0.0006 8 1 2.2242 -1.7227 1.0108 9 6 1.5030 -2.2714 -0.9165 10 8 0.8145 -1.8433 -1.8185 11 7 1.6232 -3.6012 -0.7333 12 6 0.8503 -4.5657 -1.5416 13 6 0.4104 -5.6984 -0.5924 14 1 -0.4418 -6.2852 -0.9356 15 6 1.6284 -6.5039 -0.0963 16 6 1.8095 -5.3628 0.9254 17 1 2.1794 -5.6564 1.9078 18 6 2.5341 -4.1618 0.2850 19 7 0.3381 -5.2024 0.8054 20 6 -0.0414 -3.7836 0.8415 21 6 -1.3864 -3.6336 1.5551 22 6 -1.8320 -2.1709 1.5009 23 6 -3.1783 -2.0310 2.1635 24 1 -3.6674 -2.8987 2.5811 25 6 -3.7862 -0.7956 2.2358 26 7 -3.1908 0.2609 1.7268 27 14 -5.4545 -0.6222 3.0577 28 1 -5.3561 -1.0569 4.4742 29 1 -5.8872 0.7975 3.0051 30 1 -6.4466 -1.4690 2.3478 31 1 -0.3634 0.0973 1.0231 32 1 -0.3634 0.8373 -0.5958 33 1 -0.3634 -0.9346 -0.4272 34 1 1.5424 2.0475 0.0004 35 1 3.9645 1.4719 1.0118 36 1 3.9209 2.0646 -0.6613 37 1 5.2819 0.0108 -0.8190 38 1 4.1662 -2.0365 -0.8207 39 1 1.4758 -4.9694 -2.3377 40 1 -0.0256 -4.0772 -1.9687 41 1 2.4361 -6.5764 -0.8247 42 1 1.3702 -7.4625 0.3537 43 1 2.7508 -3.4103 1.0443 44 1 3.4594 -4.4937 -0.1859 45 1 0.7199 -3.2175 1.3782 46 1 -0.1260 -3.4041 -0.1768 47 1 -2.1309 -4.2587 1.0622 48 1 -1.2826 -3.9435 2.5950 49 1 -1.1040 -1.5497 2.0226 50 1 -1.9038 -1.8512 0.4613 51 1 -3.6182 1.1301 1.7779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277949986.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:46 Heat of formation + Delta-G solvation = 59.984467 kcal Electronic energy + Delta-G solvation = -30824.037107 eV Core-core repulsion = 27111.899551 eV Total energy + Delta-G solvation = -3712.137555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.37325 -40.83917 -38.65098 -36.23006 -35.44483 -34.04615 -33.76830 -32.49148 -31.06272 -30.63180 -28.25637 -27.26101 -26.67475 -25.10110 -24.02846 -23.74612 -21.84390 -21.59859 -21.12317 -19.22287 -18.56606 -18.41659 -17.93021 -17.20510 -16.60588 -16.55435 -16.37528 -16.19706 -15.99008 -15.86485 -15.35962 -15.09004 -14.77953 -14.36795 -14.33357 -14.19140 -14.07572 -13.70562 -13.55652 -13.40219 -13.27945 -13.04513 -12.92936 -12.82384 -12.68367 -12.46340 -12.38444 -12.20036 -12.09704 -11.87954 -11.49109 -11.37775 -11.28719 -11.20553 -11.02584 -10.86205 -10.52634 -10.48483 -10.30310 -9.48707 -9.08259 -8.15821 -6.27200 1.06505 1.29064 1.35918 1.38966 1.46659 1.55901 1.88436 2.39842 2.92288 3.14711 3.33987 3.43703 3.53665 3.64001 3.72864 3.87078 3.88917 4.07486 4.12716 4.18157 4.27093 4.39073 4.40358 4.43937 4.51413 4.54634 4.62850 4.70206 4.72250 4.77904 4.81023 4.84619 4.86519 4.91441 4.97832 4.99948 5.14438 5.15813 5.21308 5.21998 5.23960 5.30756 5.44867 5.51278 5.52799 5.74928 5.80846 5.87904 5.90379 6.00571 6.02699 6.24133 6.30121 6.86356 7.05892 7.40084 8.93238 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009461 B = 0.005294 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.867316 B = 5287.496186 C = 7610.501674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.122 4.122 3 C -0.162 4.162 4 C -0.063 4.063 5 C -0.126 4.126 6 C -0.169 4.169 7 C -0.028 4.028 8 H 0.108 0.892 9 C 0.533 3.467 10 O -0.568 6.568 11 N -0.619 5.619 12 C 0.104 3.896 13 C 0.003 3.997 14 H 0.115 0.885 15 C -0.103 4.103 16 C 0.008 3.992 17 H 0.135 0.865 18 C 0.092 3.908 19 N -0.481 5.481 20 C 0.030 3.970 21 C -0.094 4.094 22 C 0.044 3.956 23 C -0.550 4.550 24 H 0.049 0.951 25 C 0.008 3.992 26 N -0.915 5.915 27 Si 0.958 3.042 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.272 1.272 31 H 0.051 0.949 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.150 0.850 38 H 0.136 0.864 39 H 0.104 0.896 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.118 0.882 45 H 0.051 0.949 46 H 0.058 0.942 47 H 0.032 0.968 48 H 0.041 0.959 49 H -0.008 1.008 50 H -0.016 1.016 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.974 -9.160 -4.388 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.122 4.122 3 C -0.180 4.180 4 C -0.099 4.099 5 C -0.144 4.144 6 C -0.187 4.187 7 C -0.048 4.048 8 H 0.125 0.875 9 C 0.323 3.677 10 O -0.447 6.447 11 N -0.353 5.353 12 C -0.019 4.019 13 C -0.107 4.107 14 H 0.133 0.867 15 C -0.141 4.141 16 C -0.102 4.102 17 H 0.153 0.847 18 C -0.030 4.030 19 N -0.202 5.202 20 C -0.099 4.099 21 C -0.133 4.133 22 C 0.006 3.994 23 C -0.588 4.588 24 H 0.068 0.932 25 C -0.191 4.191 26 N -0.554 5.554 27 Si 0.783 3.217 28 H -0.193 1.193 29 H -0.206 1.206 30 H -0.198 1.198 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.167 0.833 38 H 0.153 0.847 39 H 0.122 0.878 40 H 0.076 0.924 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.111 0.889 44 H 0.136 0.864 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.051 0.949 48 H 0.060 0.940 49 H 0.011 0.989 50 H 0.003 0.997 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 21.126 -9.029 -4.409 23.394 hybrid contribution -1.532 1.141 -0.131 1.914 sum 19.594 -7.888 -4.540 21.605 Atomic orbital electron populations 1.20836 0.92567 1.01521 1.00802 1.20659 0.95078 0.94553 1.01939 1.22210 0.97738 0.96591 1.01492 1.19395 0.89799 0.97482 1.03231 1.22523 1.00976 0.93297 0.97609 1.21844 0.92282 1.00330 1.04214 1.18850 0.94560 0.92421 0.99016 0.87475 1.20511 0.80290 0.82464 0.84448 1.90688 1.41614 1.77663 1.34725 1.48719 1.43634 1.04834 1.38160 1.22127 0.96100 0.89439 0.94219 1.24355 1.00901 0.96115 0.89304 0.86670 1.23515 0.95995 0.97330 0.97243 1.24478 0.88588 0.95528 1.01591 0.84750 1.22726 0.93246 0.96431 0.90602 1.69266 1.15078 1.16419 1.19475 1.22941 0.96125 0.90976 0.99839 1.21468 0.96099 0.96996 0.98717 1.18899 0.94509 0.91727 0.94236 1.21598 1.05181 0.93974 1.38041 0.93232 1.25861 1.01507 0.95626 0.96112 1.70092 1.39825 0.99458 1.46022 0.85621 0.79744 0.77108 0.79248 1.19267 1.20582 1.19755 0.93009 0.94382 0.92943 0.87573 0.87677 0.88005 0.83265 0.84662 0.87791 0.92432 0.88208 0.87591 0.88915 0.86436 0.93060 0.92433 0.94944 0.94046 0.98927 0.99745 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.71 8.52 71.23 0.61 -4.10 16 2 C -0.12 -4.44 5.23 -15.53 -0.08 -4.52 16 3 C -0.16 -4.95 9.50 26.61 0.25 -4.69 16 4 C -0.06 -1.27 6.27 28.61 0.18 -1.09 16 5 C -0.13 -2.30 9.92 26.61 0.26 -2.04 16 6 C -0.17 -3.61 8.88 26.61 0.24 -3.38 16 7 C -0.03 -0.84 2.07 -13.52 -0.03 -0.87 16 8 H 0.11 3.08 5.62 -2.39 -0.01 3.07 16 9 C 0.53 17.99 3.76 87.66 0.33 18.32 16 10 O -0.57 -24.72 13.89 -3.05 -0.04 -24.76 16 11 N -0.62 -16.16 1.67 -811.13 -1.35 -17.51 16 12 C 0.10 2.63 5.37 86.56 0.47 3.10 16 13 C 0.00 0.07 5.42 45.28 0.25 0.32 16 14 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 15 C -0.10 -1.47 7.49 31.50 0.24 -1.23 16 16 C 0.01 0.14 5.34 45.29 0.24 0.38 16 17 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 18 C 0.09 1.61 5.09 86.56 0.44 2.05 16 19 N -0.48 -13.67 6.18 -879.04 -5.43 -19.10 16 20 C 0.03 1.11 3.36 86.30 0.29 1.40 16 21 C -0.09 -4.44 5.48 30.59 0.17 -4.27 16 22 C 0.04 2.48 4.12 29.85 0.12 2.60 16 23 C -0.55 -33.48 9.11 25.60 0.23 -33.25 16 24 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 25 C 0.01 0.48 5.46 84.65 0.46 0.94 16 26 N -0.91 -56.95 13.29 21.45 0.28 -56.66 16 27 Si 0.96 46.54 29.54 68.60 2.03 48.57 16 28 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 29 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 30 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 31 H 0.05 2.72 6.86 -2.38 -0.02 2.71 16 32 H 0.04 1.80 8.04 -2.38 -0.02 1.78 16 33 H 0.05 2.70 4.04 -2.39 -0.01 2.69 16 34 H 0.11 3.31 7.94 -2.91 -0.02 3.29 16 35 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.14 2.18 8.05 -2.91 -0.02 2.16 16 39 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.06 1.91 6.98 -2.39 -0.02 1.89 16 41 H 0.10 0.93 8.06 -2.39 -0.02 0.91 16 42 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.09 1.63 5.43 -2.39 -0.01 1.62 16 44 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.05 1.88 5.23 -2.38 -0.01 1.87 16 46 H 0.06 2.36 3.34 -2.39 -0.01 2.35 16 47 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 49 H -0.01 -0.45 6.95 -2.39 -0.02 -0.47 16 50 H -0.02 -0.99 6.63 -2.39 -0.02 -1.00 16 51 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -79.40 376.84 1.07 -78.32 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.92 Total: 21.49 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 4.66 Total: -30.34 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -6.50 Total: -93.28 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.04 Total: -24.76 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -79.40 1.07 -78.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277949986.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.306 kcal (2) G-P(sol) polarization free energy of solvation -79.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds