Wall clock time and date at job start Tue Mar 31 2020 15:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.29825 * 118.58422 * 2 1 4 4 C 1.49915 * 122.84157 * 180.02562 * 3 2 1 5 5 C 1.49914 * 111.18739 * 340.43795 * 4 3 2 6 6 C 1.29783 * 122.81169 * 19.50442 * 5 4 3 7 7 C 1.49910 * 122.88304 * 0.10936 * 6 5 4 8 8 H 1.08999 * 109.13369 * 100.75695 * 7 6 5 9 9 C 1.50705 * 109.13290 * 219.93003 * 7 6 5 10 10 O 1.21284 * 119.99724 * 101.40704 * 9 7 6 11 11 N 1.34768 * 120.00190 * 281.40553 * 9 7 6 12 12 C 1.47691 * 121.55611 * 355.15086 * 11 9 7 13 13 C 1.54192 * 107.06214 * 219.37370 * 12 11 9 14 14 H 1.08998 * 114.66525 * 159.50940 * 13 12 11 15 15 C 1.54234 * 110.87692 * 293.18572 * 13 12 11 16 16 C 1.54234 * 85.37478 * 81.32558 * 15 13 12 17 17 H 1.08994 * 115.95255 * 144.96086 * 16 15 13 18 18 C 1.49388 * 121.70211 * 174.82537 * 11 9 7 19 19 N 1.48496 * 110.35783 * 25.42146 * 13 12 11 20 20 C 1.46895 * 111.00318 * 31.62052 * 19 13 12 21 21 C 1.53003 * 109.47071 * 149.22733 * 20 19 13 22 22 C 1.52999 * 109.47062 * 174.33830 * 21 20 19 23 23 C 1.50704 * 109.47353 * 183.65659 * 22 21 20 24 24 H 1.07999 * 119.99689 * 0.02562 * 23 22 21 25 25 C 1.37874 * 120.00074 * 180.02562 * 23 22 21 26 26 N 1.31516 * 119.99892 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 119.99995 * 359.97438 * 25 23 22 28 28 H 1.48505 * 109.47008 * 90.00612 * 27 25 23 29 29 H 1.48504 * 109.46894 * 209.99976 * 27 25 23 30 30 H 1.48492 * 109.47341 * 329.99941 * 27 25 23 31 31 H 1.09003 * 109.47401 * 269.97890 * 1 2 3 32 32 H 1.09007 * 109.47345 * 29.98127 * 1 2 3 33 33 H 1.09004 * 109.47439 * 149.97805 * 1 2 3 34 34 H 1.07999 * 118.58051 * 0.02562 * 3 2 1 35 35 H 1.08994 * 109.13208 * 100.87389 * 4 3 2 36 36 H 1.08996 * 109.13083 * 220.05307 * 4 3 2 37 37 H 1.07998 * 118.57817 * 199.54086 * 5 4 3 38 38 H 1.07997 * 118.53061 * 180.02562 * 6 5 4 39 39 H 1.08999 * 109.95028 * 99.95984 * 12 11 9 40 40 H 1.09000 * 109.94534 * 338.78563 * 12 11 9 41 41 H 1.08998 * 113.88596 * 195.43511 * 15 13 12 42 42 H 1.09003 * 113.88809 * 327.08109 * 15 13 12 43 43 H 1.08994 * 109.80234 * 21.61788 * 18 11 9 44 44 H 1.09006 * 110.87028 * 259.93827 * 18 11 9 45 45 H 1.08996 * 109.47472 * 269.22885 * 20 19 13 46 46 H 1.09000 * 109.47090 * 29.22911 * 20 19 13 47 47 H 1.09000 * 109.46865 * 294.33511 * 21 20 19 48 48 H 1.09000 * 109.47217 * 54.33914 * 21 20 19 49 49 H 1.09002 * 109.47595 * 303.65681 * 22 21 20 50 50 H 1.09005 * 109.47094 * 63.65735 * 22 21 20 51 51 H 0.96996 * 120.00131 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1281 1.1400 0.0000 4 6 3.6231 1.2513 -0.0006 5 6 4.2614 -0.0221 0.4669 6 6 3.6397 -1.1613 0.4678 7 6 2.2241 -1.3164 -0.0006 8 1 2.2249 -1.7224 -1.0121 9 6 1.5030 -2.2723 0.9146 10 8 0.7553 -1.8461 1.7691 11 7 1.6889 -3.6006 0.7834 12 6 2.5073 -4.1622 -0.3103 13 6 1.7943 -5.4391 -0.7990 14 1 2.0747 -5.7612 -1.8018 15 6 1.8136 -6.5306 0.2906 16 6 0.6116 -5.7748 0.8929 17 1 -0.1521 -6.3925 1.3653 18 6 1.0844 -4.5762 1.7397 19 7 0.3402 -5.3625 -0.5077 20 6 -0.1358 -3.9740 -0.5649 21 6 -1.5950 -3.9536 -1.0244 22 6 -2.1335 -2.5234 -0.9490 23 6 -3.5953 -2.5170 -1.3153 24 1 -4.0908 -3.4407 -1.5755 25 6 -4.3001 -1.3320 -1.3183 26 7 -5.5759 -1.3265 -1.6376 27 14 -3.4431 0.2654 -0.8677 28 1 -2.8779 0.8866 -2.0924 29 1 -4.4221 1.1946 -0.2481 30 1 -2.3485 -0.0147 0.0958 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5136 33 1 -0.3634 -0.8898 -0.5142 34 1 1.5425 2.0475 0.0004 35 1 3.9645 1.4718 -1.0119 36 1 3.9210 2.0637 0.6621 37 1 5.2820 0.0104 0.8186 38 1 4.1662 -2.0360 0.8201 39 1 3.5023 -4.4101 0.0592 40 1 2.5822 -3.4429 -1.1258 41 1 1.5689 -7.5267 -0.0782 42 1 2.7063 -6.5143 0.9159 43 1 0.2337 -4.1191 2.2450 44 1 1.8193 -4.9065 2.4740 45 1 -0.0600 -3.5229 0.4244 46 1 0.4749 -3.4093 -1.2694 47 1 -1.6573 -4.3115 -2.0520 48 1 -2.1886 -4.5999 -0.3778 49 1 -2.0114 -2.1421 0.0649 50 1 -1.5819 -1.8904 -1.6441 51 1 -6.0718 -0.4930 -1.6394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277949987.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:50 Heat of formation + Delta-G solvation = 86.213100 kcal Electronic energy + Delta-G solvation = -30889.397075 eV Core-core repulsion = 27178.396879 eV Total energy + Delta-G solvation = -3711.000196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.34247 -39.84039 -37.67298 -34.49556 -34.26908 -32.89068 -32.07304 -31.57159 -30.23337 -29.41385 -27.28495 -25.97423 -25.45838 -24.24680 -22.87490 -22.03920 -20.70299 -20.25342 -20.03202 -18.28162 -17.54886 -16.94569 -16.67593 -16.17030 -15.82136 -15.42196 -15.19723 -14.96555 -14.88206 -14.39775 -14.13635 -14.00875 -13.44512 -13.36883 -13.21422 -13.18135 -12.72846 -12.59730 -12.46100 -12.27212 -12.08137 -11.93411 -11.79626 -11.62686 -11.27050 -11.13441 -10.94932 -10.76092 -10.65567 -10.45078 -10.38686 -10.02339 -9.71611 -9.55047 -9.51883 -9.44147 -9.36303 -9.03901 -8.55726 -8.42937 -8.00210 -5.94442 -3.92154 1.84990 2.22812 2.60924 2.75086 3.37947 3.46180 3.52276 3.84108 4.19525 4.25618 4.39490 4.45255 4.54907 4.59603 4.73968 4.88042 4.90744 4.92974 5.01314 5.08442 5.21783 5.34394 5.37616 5.39412 5.40127 5.51097 5.52958 5.56557 5.59619 5.60918 5.71752 5.87405 5.88152 5.98308 6.03099 6.07185 6.14133 6.22517 6.27861 6.39741 6.48362 6.57530 6.65954 6.77279 6.78787 6.98747 7.06805 7.19161 7.21541 7.46533 7.58160 7.90899 8.10476 8.65291 9.10811 9.68399 11.18601 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009065 B = 0.006209 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.977923 B = 4508.283023 C = 7033.231403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.091 4.091 3 C -0.172 4.172 4 C -0.061 4.061 5 C -0.137 4.137 6 C -0.152 4.152 7 C -0.036 4.036 8 H 0.109 0.891 9 C 0.535 3.465 10 O -0.513 6.513 11 N -0.624 5.624 12 C 0.097 3.903 13 C 0.006 3.994 14 H 0.117 0.883 15 C -0.131 4.131 16 C 0.010 3.990 17 H 0.117 0.883 18 C 0.103 3.897 19 N -0.452 5.452 20 C -0.002 4.002 21 C -0.093 4.093 22 C -0.009 4.009 23 C -0.515 4.515 24 H 0.069 0.931 25 C 0.065 3.935 26 N -0.907 5.907 27 Si 0.863 3.137 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.242 1.242 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.050 0.950 47 H 0.049 0.951 48 H 0.052 0.948 49 H 0.017 0.983 50 H 0.006 0.994 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.227 -3.962 4.507 25.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.092 4.092 3 C -0.190 4.190 4 C -0.097 4.097 5 C -0.155 4.155 6 C -0.171 4.171 7 C -0.057 4.057 8 H 0.127 0.873 9 C 0.323 3.677 10 O -0.387 6.387 11 N -0.361 5.361 12 C -0.027 4.027 13 C -0.104 4.104 14 H 0.135 0.865 15 C -0.168 4.168 16 C -0.100 4.100 17 H 0.134 0.866 18 C -0.019 4.019 19 N -0.174 5.174 20 C -0.130 4.130 21 C -0.132 4.132 22 C -0.047 4.047 23 C -0.553 4.553 24 H 0.088 0.912 25 C -0.135 4.135 26 N -0.547 5.547 27 Si 0.690 3.310 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.166 1.166 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.088 0.912 43 H 0.117 0.883 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.036 0.964 50 H 0.024 0.976 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 24.151 -3.922 4.557 24.888 hybrid contribution 0.768 1.386 0.469 1.652 sum 24.919 -2.537 5.026 25.547 Atomic orbital electron populations 1.21328 0.90182 1.02999 1.03675 1.20672 0.96749 0.92444 0.99302 1.21902 0.95318 0.97599 1.04183 1.19248 0.92834 0.96152 1.01511 1.22204 0.99693 0.94325 0.99234 1.21743 0.93977 0.98672 1.02668 1.18941 0.93093 0.94103 0.99544 0.87327 1.20111 0.81347 0.81393 0.84835 1.90740 1.35957 1.76528 1.35510 1.49094 1.51718 1.05664 1.29643 1.22408 0.94271 0.96214 0.89811 1.24240 0.91329 0.94430 1.00398 0.86531 1.23615 0.97539 0.98693 0.96970 1.24205 0.98047 0.95976 0.91798 0.86559 1.22459 0.99064 0.88899 0.91466 1.69345 1.12294 1.23031 1.12700 1.23464 0.98028 0.89202 1.02287 1.21418 0.92352 0.99168 1.00220 1.19586 0.96633 0.92318 0.96168 1.21148 0.93027 0.95399 1.45697 0.91247 1.25029 0.94689 0.99073 0.94711 1.69924 1.08086 1.27061 1.49610 0.87102 0.80478 0.83627 0.79791 1.20574 1.21868 1.16593 0.89857 0.92574 0.90557 0.86773 0.89603 0.90177 0.86827 0.87041 0.90573 0.89274 0.88684 0.91191 0.88291 0.90355 0.89948 0.93137 0.93182 0.92945 0.96449 0.97573 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 6.05 36.00 0.22 -2.09 16 2 C -0.09 -1.38 5.24 -101.12 -0.53 -1.91 16 3 C -0.17 -2.23 9.49 -36.07 -0.34 -2.57 16 4 C -0.06 -0.60 6.27 -29.79 -0.19 -0.78 16 5 C -0.14 -1.30 9.93 -36.06 -0.36 -1.66 16 6 C -0.15 -1.60 8.93 -36.07 -0.32 -1.93 16 7 C -0.04 -0.48 2.22 -94.83 -0.21 -0.69 16 8 H 0.11 1.30 6.31 -51.93 -0.33 0.98 16 9 C 0.53 7.99 4.27 -10.99 -0.05 7.95 16 10 O -0.51 -9.70 13.58 5.55 0.08 -9.63 16 11 N -0.62 -7.64 1.67 -168.89 -0.28 -7.92 16 12 C 0.10 0.90 5.08 -2.77 -0.01 0.88 16 13 C 0.01 0.06 5.33 -65.78 -0.35 -0.29 16 14 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 15 C -0.13 -1.12 7.49 -25.65 -0.19 -1.31 16 16 C 0.01 0.11 5.38 -65.77 -0.35 -0.24 16 17 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 18 C 0.10 1.22 5.58 -1.81 -0.01 1.21 16 19 N -0.45 -6.33 6.18 -229.15 -1.42 -7.74 16 20 C 0.00 -0.03 3.36 -3.83 -0.01 -0.04 16 21 C -0.09 -2.01 5.48 -26.73 -0.15 -2.15 16 22 C -0.01 -0.23 2.96 -27.88 -0.08 -0.32 16 23 C -0.51 -15.37 9.66 -34.44 -0.33 -15.70 16 24 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 25 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 26 N -0.91 -29.16 13.96 55.43 0.77 -28.38 16 27 Si 0.86 22.20 26.65 -169.99 -4.53 17.67 16 28 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 30 H -0.24 -5.81 4.11 56.52 0.23 -5.57 16 31 H 0.08 1.68 6.98 -51.93 -0.36 1.31 16 32 H 0.06 0.99 7.49 -51.92 -0.39 0.61 16 33 H 0.08 1.53 4.93 -51.93 -0.26 1.27 16 34 H 0.11 1.42 7.88 -52.49 -0.41 1.01 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.11 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.11 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.80 5.54 -51.93 -0.29 0.51 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.48 8.06 -51.93 -0.42 0.07 16 43 H 0.10 1.42 6.99 -51.93 -0.36 1.06 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 1.47 2.84 -53.09 -0.15 1.32 16 46 H 0.05 0.84 6.46 -51.93 -0.34 0.50 16 47 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.02 0.45 6.81 -51.93 -0.35 0.09 16 50 H 0.01 0.15 6.46 -51.93 -0.34 -0.18 16 51 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 370.99 15.07 5.59 5.59 Total: -1.00 -34.97 370.99 -11.53 -46.50 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -8.37 Total: 3.66 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -3.37 Total: -19.74 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: -0.92 Total: -44.05 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.53 Total: 17.67 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.97 -11.53 -46.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277949987.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.709 kcal (2) G-P(sol) polarization free energy of solvation -34.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds