Wall clock time and date at job start Tue Mar 31 2020 15:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29826 * 118.57959 * 2 1 4 4 C 1.49906 * 122.83550 * 179.97438 * 3 2 1 5 5 C 1.49913 * 111.19101 * 19.56996 * 4 3 2 6 6 C 1.29821 * 122.83370 * 340.47393 * 5 4 3 7 7 C 1.49912 * 118.57870 * 180.02562 * 2 1 3 8 8 H 1.08997 * 109.09084 * 280.86935 * 7 2 1 9 9 C 1.50703 * 109.13472 * 40.02333 * 7 2 1 10 10 O 1.21283 * 119.99973 * 64.91452 * 9 7 2 11 11 N 1.34769 * 119.99960 * 244.91368 * 9 7 2 12 12 C 1.47848 * 134.73652 * 359.94935 * 11 9 7 13 13 C 1.54178 * 86.43944 * 203.64815 * 12 11 9 14 14 C 1.46240 * 134.73424 * 179.97438 * 11 9 7 15 15 C 1.52265 * 122.25825 * 29.10611 * 14 11 9 16 16 N 1.47722 * 87.56016 * 209.56136 * 15 14 11 17 17 C 1.46901 * 111.00184 * 137.73133 * 16 15 14 18 18 C 1.53001 * 109.47257 * 169.99793 * 17 16 15 19 19 C 1.52996 * 109.47287 * 179.97438 * 18 17 16 20 20 C 1.50692 * 109.47518 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00163 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00526 * 179.97438 * 20 19 18 23 23 N 1.31511 * 120.00372 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99659 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47387 * 90.00083 * 24 22 20 26 26 H 1.48506 * 109.47029 * 210.00117 * 24 22 20 27 27 H 1.48496 * 109.47082 * 329.99697 * 24 22 20 28 28 C 1.47718 * 88.19087 * 25.89401 * 16 15 14 29 29 H 1.08994 * 109.47669 * 264.85445 * 1 2 3 30 30 H 1.09004 * 109.47033 * 24.86075 * 1 2 3 31 31 H 1.09001 * 109.46782 * 144.85454 * 1 2 3 32 32 H 1.07999 * 118.57898 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.13402 * 259.12501 * 4 3 2 34 34 H 1.09007 * 109.13341 * 140.00508 * 4 3 2 35 35 H 1.08001 * 118.58131 * 160.46312 * 5 4 3 36 36 H 1.08002 * 118.58009 * 179.97438 * 6 5 4 37 37 H 1.09001 * 113.72192 * 89.26445 * 12 11 9 38 38 H 1.09004 * 113.81097 * 318.04507 * 12 11 9 39 39 H 1.08998 * 113.82482 * 223.16506 * 13 12 11 40 40 H 1.08999 * 113.93059 * 91.61408 * 13 12 11 41 41 H 1.09000 * 113.54038 * 94.88493 * 15 14 11 42 42 H 1.09003 * 113.60043 * 324.24233 * 15 14 11 43 43 H 1.09006 * 109.47074 * 49.99902 * 17 16 15 44 44 H 1.08996 * 109.47295 * 289.99534 * 17 16 15 45 45 H 1.08998 * 109.47368 * 59.99550 * 18 17 16 46 46 H 1.09007 * 109.47118 * 299.99473 * 18 17 16 47 47 H 1.09004 * 109.47291 * 300.00054 * 19 18 17 48 48 H 1.09008 * 109.47189 * 59.99571 * 19 18 17 49 49 H 0.96996 * 120.00283 * 180.02562 * 23 22 20 50 50 H 1.09000 * 113.53736 * 88.77788 * 28 16 15 51 51 H 1.09001 * 113.53701 * 219.43374 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1281 1.1401 0.0000 4 6 3.6230 1.2513 0.0006 5 6 4.2614 -0.0220 -0.4671 6 6 3.6401 -1.1619 -0.4679 7 6 2.2242 -1.3165 -0.0006 8 1 2.2241 -1.7229 1.0108 9 6 1.5030 -2.2714 -0.9166 10 8 1.4507 -2.0467 -2.1073 11 7 0.9163 -3.3751 -0.4128 12 6 0.7805 -3.9560 0.9401 13 6 0.5773 -5.3110 0.2332 14 6 0.1550 -4.4868 -0.9813 15 6 0.3722 -4.9756 -2.4068 16 7 -1.0480 -5.3818 -2.4169 17 6 -1.6865 -5.0326 -3.6930 18 6 -3.0696 -5.6827 -3.7660 19 6 -3.7348 -5.3185 -5.0948 20 6 -5.0968 -5.9592 -5.1670 21 1 -5.4523 -6.5660 -4.3474 22 6 -5.8892 -5.7710 -6.2796 23 7 -7.0780 -6.3298 -6.3424 24 14 -5.2741 -4.7221 -7.6976 25 1 -4.5462 -5.5790 -8.6678 26 1 -6.4287 -4.0786 -8.3745 27 1 -4.3585 -3.6749 -7.1779 28 6 -1.3032 -4.3450 -1.3960 29 1 -0.3634 -0.0922 1.0234 30 1 -0.3633 0.9325 -0.4321 31 1 -0.3633 -0.8403 -0.5916 32 1 1.5424 2.0475 -0.0004 33 1 3.9645 1.4718 1.0120 34 1 3.9210 2.0645 -0.6614 35 1 5.2820 0.0105 -0.8187 36 1 4.1662 -2.0368 -0.8203 37 1 -0.0994 -3.6072 1.4807 38 1 1.6924 -3.9041 1.5349 39 1 -0.2264 -5.9128 0.6575 40 1 1.4983 -5.8745 0.0844 41 1 1.0653 -5.8139 -2.4787 42 1 0.6015 -4.1767 -3.1120 43 1 -1.0715 -5.3932 -4.5176 44 1 -1.7899 -3.9498 -3.7632 45 1 -3.6845 -5.3222 -2.9414 46 1 -2.9663 -6.7656 -3.6958 47 1 -3.8382 -4.2356 -5.1646 48 1 -3.1199 -5.6787 -5.9197 49 1 -7.6353 -6.1976 -7.1252 50 1 -1.5429 -3.3688 -1.8175 51 1 -2.0074 -4.6574 -0.6249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277950503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:24 Heat of formation + Delta-G solvation = 60.765105 kcal Electronic energy + Delta-G solvation = -28312.586861 eV Core-core repulsion = 24600.483157 eV Total energy + Delta-G solvation = -3712.103704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.61692 -39.96642 -37.96183 -37.03653 -34.06760 -33.39106 -32.04265 -31.64961 -29.74563 -28.59542 -27.45491 -26.17057 -25.54830 -24.69128 -23.05080 -22.10207 -20.96690 -20.72398 -20.01161 -18.36394 -17.20048 -17.04869 -16.57978 -16.37885 -16.05399 -15.81384 -15.50850 -15.09235 -14.59487 -14.55254 -14.22579 -13.87053 -13.83567 -13.64836 -13.26628 -13.18196 -12.93808 -12.72930 -12.67845 -12.53867 -12.47644 -12.36336 -12.06201 -11.87896 -11.60786 -11.36158 -11.21997 -10.90062 -10.81497 -10.80957 -10.57260 -10.08128 -9.86596 -9.76145 -9.65059 -9.50075 -9.13279 -8.98573 -8.89783 -8.74337 -8.49158 -5.99843 -3.97187 1.63243 1.91194 2.36074 2.55171 3.34372 3.41362 3.46322 3.95526 4.08226 4.11719 4.16450 4.28349 4.37376 4.49640 4.63379 4.69495 4.73223 4.80351 4.86098 4.92760 5.02240 5.06075 5.18548 5.24990 5.26995 5.34366 5.36705 5.39325 5.48053 5.51560 5.55962 5.61069 5.65882 5.67941 5.70821 5.75240 5.81032 5.87519 5.98138 6.17948 6.29799 6.36558 6.38713 6.52894 6.59146 6.69562 6.99291 7.16069 7.39586 7.45270 7.51061 7.84915 7.94370 8.59815 9.05842 9.63123 11.13694 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.002411 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.299545 B =11609.759764 C =12497.517749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C -0.150 4.150 4 C -0.064 4.064 5 C -0.144 4.144 6 C -0.141 4.141 7 C -0.028 4.028 8 H 0.102 0.898 9 C 0.548 3.452 10 O -0.526 6.526 11 N -0.631 5.631 12 C 0.099 3.901 13 C -0.116 4.116 14 C 0.130 3.870 15 C 0.000 4.000 16 N -0.461 5.461 17 C 0.021 3.979 18 C -0.090 4.090 19 C -0.015 4.015 20 C -0.517 4.517 21 H 0.072 0.928 22 C 0.065 3.935 23 N -0.905 5.905 24 Si 0.880 3.120 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.266 1.266 28 C 0.008 3.992 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.041 0.959 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.013 0.987 48 H 0.010 0.990 49 H 0.262 0.738 50 H 0.075 0.925 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.480 11.918 21.029 34.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.112 4.112 3 C -0.168 4.168 4 C -0.100 4.100 5 C -0.162 4.162 6 C -0.160 4.160 7 C -0.049 4.049 8 H 0.120 0.880 9 C 0.337 3.663 10 O -0.401 6.401 11 N -0.367 5.367 12 C -0.024 4.024 13 C -0.154 4.154 14 C 0.044 3.956 15 C -0.130 4.130 16 N -0.183 5.183 17 C -0.108 4.108 18 C -0.128 4.128 19 C -0.053 4.053 20 C -0.555 4.555 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.544 5.544 24 Si 0.707 3.293 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.191 1.191 28 C -0.122 4.122 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.134 0.866 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.031 0.969 48 H 0.029 0.971 49 H 0.072 0.928 50 H 0.093 0.907 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 24.187 11.522 20.253 33.585 hybrid contribution 0.289 1.425 -1.206 1.889 sum 24.476 12.948 19.047 33.608 Atomic orbital electron populations 1.20945 0.91601 1.03178 1.02093 1.20488 0.95874 0.92958 1.01841 1.22004 0.95874 0.97341 1.01557 1.19275 0.92401 0.96606 1.01708 1.22151 1.00082 0.94011 0.99915 1.21706 0.93803 0.98825 1.01657 1.18775 0.93238 0.93514 0.99381 0.88041 1.20057 0.78399 0.79163 0.88633 1.90732 1.60181 1.73078 1.16159 1.50095 1.53496 1.22524 1.10573 1.23301 1.02080 0.91168 0.85853 1.23088 1.03108 0.95634 0.93530 1.22704 0.93306 0.84234 0.95325 1.23927 0.93598 1.00251 0.95226 1.68955 1.02935 1.39069 1.07379 1.22886 0.98205 0.98756 0.90922 1.21333 0.91820 1.00194 0.99435 1.19572 0.96361 0.96449 0.92872 1.21141 0.98971 1.30993 1.04371 0.90994 1.25038 0.94746 0.95498 0.98312 1.69915 1.09922 1.44819 1.29768 0.86780 0.78479 0.81318 0.82724 1.20296 1.21423 1.19086 1.23990 0.94973 0.96089 0.97126 0.91256 0.91353 0.91845 0.86632 0.89424 0.89864 0.86669 0.86945 0.89297 0.89823 0.88612 0.88394 0.89330 0.89823 0.91216 0.94060 0.92948 0.92025 0.96908 0.97126 0.92809 0.90659 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.77 36.01 0.35 -0.78 16 2 C -0.11 -1.06 5.49 -101.11 -0.56 -1.62 16 3 C -0.15 -1.25 9.49 -36.08 -0.34 -1.59 16 4 C -0.06 -0.43 6.27 -29.80 -0.19 -0.62 16 5 C -0.14 -1.13 9.93 -36.07 -0.36 -1.49 16 6 C -0.14 -1.30 8.98 -36.08 -0.32 -1.62 16 7 C -0.03 -0.27 2.91 -94.84 -0.28 -0.54 16 8 H 0.10 0.74 7.21 -51.93 -0.37 0.37 16 9 C 0.55 6.70 5.05 -10.99 -0.06 6.65 16 10 O -0.53 -8.77 16.55 5.55 0.09 -8.68 16 11 N -0.63 -6.44 3.61 -164.68 -0.60 -7.03 16 12 C 0.10 0.61 8.16 -2.97 -0.02 0.58 16 13 C -0.12 -0.84 8.11 -26.28 -0.21 -1.05 16 14 C 0.13 1.43 1.81 -134.34 -0.24 1.19 16 15 C 0.00 -0.01 7.43 -6.70 -0.05 -0.06 16 16 N -0.46 -6.97 6.32 -244.60 -1.55 -8.52 16 17 C 0.02 0.36 4.81 -3.82 -0.02 0.35 16 18 C -0.09 -1.89 5.48 -26.73 -0.15 -2.03 16 19 C -0.01 -0.37 4.04 -27.89 -0.11 -0.48 16 20 C -0.52 -15.27 9.66 -34.44 -0.33 -15.61 16 21 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 22 C 0.06 1.95 5.47 -17.82 -0.10 1.85 16 23 N -0.90 -28.62 13.96 55.43 0.77 -27.84 16 24 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 27 H -0.27 -6.62 6.54 56.52 0.37 -6.25 16 28 C 0.01 0.11 7.64 -6.71 -0.05 0.06 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.60 7.85 -51.93 -0.41 0.19 16 31 H 0.06 0.73 6.61 -51.93 -0.34 0.38 16 32 H 0.12 0.81 7.82 -52.49 -0.41 0.40 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.11 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.34 7.95 -51.93 -0.41 -0.07 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.08 1.31 7.05 -51.93 -0.37 0.95 16 43 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 44 H 0.04 0.75 7.31 -51.93 -0.38 0.37 16 45 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 47 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 48 H 0.01 0.26 7.57 -51.92 -0.39 -0.13 16 49 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 50 H 0.08 1.10 7.42 -51.93 -0.39 0.72 16 51 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 405.08 15.07 6.10 6.10 Total: -1.00 -35.19 405.08 -11.80 -46.99 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -8.93 Total: -2.08 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -3.04 Total: -16.81 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: -1.37 Total: -43.40 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.19 -11.80 -46.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277950503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.756 kcal (2) G-P(sol) polarization free energy of solvation -35.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds