Wall clock time and date at job start Tue Mar 31 2020 15:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29826 * 118.57959 * 2 1 4 4 C 1.49906 * 122.83550 * 179.97438 * 3 2 1 5 5 C 1.49913 * 111.19101 * 19.56996 * 4 3 2 6 6 C 1.29821 * 122.83370 * 340.47393 * 5 4 3 7 7 C 1.49912 * 118.57870 * 180.02562 * 2 1 3 8 8 H 1.08997 * 109.09084 * 280.86935 * 7 2 1 9 9 C 1.50703 * 109.13472 * 40.02333 * 7 2 1 10 10 O 1.21283 * 119.99973 * 64.91452 * 9 7 2 11 11 N 1.34769 * 119.99960 * 244.91368 * 9 7 2 12 12 C 1.47848 * 134.73652 * 359.94935 * 11 9 7 13 13 C 1.54178 * 86.43944 * 203.64815 * 12 11 9 14 14 C 1.46240 * 134.73424 * 179.97438 * 11 9 7 15 15 C 1.52265 * 122.25825 * 29.10611 * 14 11 9 16 16 N 1.47722 * 87.56016 * 209.56136 * 15 14 11 17 17 C 1.46901 * 111.00184 * 137.73133 * 16 15 14 18 18 C 1.53001 * 109.47257 * 169.99793 * 17 16 15 19 19 C 1.52996 * 109.47287 * 179.97438 * 18 17 16 20 20 C 1.50692 * 109.47518 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00163 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00526 * 179.97438 * 20 19 18 23 23 N 1.31511 * 120.00372 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99659 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47387 * 90.00083 * 24 22 20 26 26 H 1.48506 * 109.47029 * 210.00117 * 24 22 20 27 27 H 1.48496 * 109.47082 * 329.99697 * 24 22 20 28 28 C 1.47718 * 88.19087 * 25.89401 * 16 15 14 29 29 H 1.08994 * 109.47669 * 264.85445 * 1 2 3 30 30 H 1.09004 * 109.47033 * 24.86075 * 1 2 3 31 31 H 1.09001 * 109.46782 * 144.85454 * 1 2 3 32 32 H 1.07999 * 118.57898 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.13402 * 259.12501 * 4 3 2 34 34 H 1.09007 * 109.13341 * 140.00508 * 4 3 2 35 35 H 1.08001 * 118.58131 * 160.46312 * 5 4 3 36 36 H 1.08002 * 118.58009 * 179.97438 * 6 5 4 37 37 H 1.09001 * 113.72192 * 89.26445 * 12 11 9 38 38 H 1.09004 * 113.81097 * 318.04507 * 12 11 9 39 39 H 1.08998 * 113.82482 * 223.16506 * 13 12 11 40 40 H 1.08999 * 113.93059 * 91.61408 * 13 12 11 41 41 H 1.09000 * 113.54038 * 94.88493 * 15 14 11 42 42 H 1.09003 * 113.60043 * 324.24233 * 15 14 11 43 43 H 1.09006 * 109.47074 * 49.99902 * 17 16 15 44 44 H 1.08996 * 109.47295 * 289.99534 * 17 16 15 45 45 H 1.08998 * 109.47368 * 59.99550 * 18 17 16 46 46 H 1.09007 * 109.47118 * 299.99473 * 18 17 16 47 47 H 1.09004 * 109.47291 * 300.00054 * 19 18 17 48 48 H 1.09008 * 109.47189 * 59.99571 * 19 18 17 49 49 H 0.96996 * 120.00283 * 180.02562 * 23 22 20 50 50 H 1.09000 * 113.53736 * 88.77788 * 28 16 15 51 51 H 1.09001 * 113.53701 * 219.43374 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1281 1.1401 0.0000 4 6 3.6230 1.2513 0.0006 5 6 4.2614 -0.0220 -0.4671 6 6 3.6401 -1.1619 -0.4679 7 6 2.2242 -1.3165 -0.0006 8 1 2.2241 -1.7229 1.0108 9 6 1.5030 -2.2714 -0.9166 10 8 1.4507 -2.0467 -2.1073 11 7 0.9163 -3.3751 -0.4128 12 6 0.7805 -3.9560 0.9401 13 6 0.5773 -5.3110 0.2332 14 6 0.1550 -4.4868 -0.9813 15 6 0.3722 -4.9756 -2.4068 16 7 -1.0480 -5.3818 -2.4169 17 6 -1.6865 -5.0326 -3.6930 18 6 -3.0696 -5.6827 -3.7660 19 6 -3.7348 -5.3185 -5.0948 20 6 -5.0968 -5.9592 -5.1670 21 1 -5.4523 -6.5660 -4.3474 22 6 -5.8892 -5.7710 -6.2796 23 7 -7.0780 -6.3298 -6.3424 24 14 -5.2741 -4.7221 -7.6976 25 1 -4.5462 -5.5790 -8.6678 26 1 -6.4287 -4.0786 -8.3745 27 1 -4.3585 -3.6749 -7.1779 28 6 -1.3032 -4.3450 -1.3960 29 1 -0.3634 -0.0922 1.0234 30 1 -0.3633 0.9325 -0.4321 31 1 -0.3633 -0.8403 -0.5916 32 1 1.5424 2.0475 -0.0004 33 1 3.9645 1.4718 1.0120 34 1 3.9210 2.0645 -0.6614 35 1 5.2820 0.0105 -0.8187 36 1 4.1662 -2.0368 -0.8203 37 1 -0.0994 -3.6072 1.4807 38 1 1.6924 -3.9041 1.5349 39 1 -0.2264 -5.9128 0.6575 40 1 1.4983 -5.8745 0.0844 41 1 1.0653 -5.8139 -2.4787 42 1 0.6015 -4.1767 -3.1120 43 1 -1.0715 -5.3932 -4.5176 44 1 -1.7899 -3.9498 -3.7632 45 1 -3.6845 -5.3222 -2.9414 46 1 -2.9663 -6.7656 -3.6958 47 1 -3.8382 -4.2356 -5.1646 48 1 -3.1199 -5.6787 -5.9197 49 1 -7.6353 -6.1976 -7.1252 50 1 -1.5429 -3.3688 -1.8175 51 1 -2.0074 -4.6574 -0.6249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277950503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:23 Heat of formation + Delta-G solvation = 37.461350 kcal Electronic energy + Delta-G solvation = -28313.597388 eV Core-core repulsion = 24600.483157 eV Total energy + Delta-G solvation = -3713.114231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.51305 -40.79278 -38.82746 -37.98879 -35.97865 -34.04928 -33.96871 -32.49066 -30.62175 -30.05889 -28.13772 -27.25738 -26.99272 -25.41320 -24.21642 -23.11579 -22.07441 -21.74312 -21.47510 -19.21793 -18.95437 -17.93942 -17.86067 -17.24148 -16.75894 -16.64202 -16.53960 -16.29303 -15.97473 -15.78222 -15.34838 -14.89389 -14.68101 -14.64846 -14.58231 -14.30212 -13.98665 -13.88800 -13.80162 -13.66709 -13.36136 -13.21689 -13.09591 -13.01632 -12.81394 -12.58352 -12.38351 -12.25856 -12.15203 -11.90571 -11.75959 -11.46327 -11.42325 -11.40675 -11.18328 -10.96588 -10.80020 -10.39407 -10.05618 -9.75506 -9.53536 -8.32903 -6.36791 0.99795 1.26594 1.31557 1.33135 1.45493 1.51768 1.78748 2.32349 2.95837 3.01703 3.18945 3.38673 3.46358 3.58047 3.69455 3.73908 3.90050 3.94876 4.06635 4.19047 4.20859 4.26689 4.35122 4.38134 4.43753 4.50766 4.52126 4.56712 4.60630 4.62334 4.67564 4.70759 4.75423 4.84533 4.86730 4.87505 4.95018 4.96319 5.04105 5.06212 5.09177 5.18792 5.22948 5.24155 5.45883 5.54790 5.61708 5.76558 5.77787 5.88322 5.91446 6.25822 6.67120 6.70417 7.07410 7.27489 8.83883 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.002411 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.299545 B =11609.759764 C =12497.517749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.137 4.137 3 C -0.146 4.146 4 C -0.067 4.067 5 C -0.138 4.138 6 C -0.167 4.167 7 C -0.021 4.021 8 H 0.124 0.876 9 C 0.544 3.456 10 O -0.583 6.583 11 N -0.633 5.633 12 C 0.103 3.897 13 C -0.104 4.104 14 C 0.130 3.870 15 C -0.002 4.002 16 N -0.466 5.466 17 C 0.033 3.967 18 C -0.078 4.078 19 C -0.012 4.012 20 C -0.532 4.532 21 H 0.034 0.966 22 C 0.005 3.995 23 N -0.949 5.949 24 Si 0.950 3.050 25 H -0.265 1.265 26 H -0.280 1.280 27 H -0.254 1.254 28 C 0.005 3.995 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.034 0.966 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.033 0.967 45 H 0.046 0.954 46 H 0.054 0.946 47 H 0.013 0.987 48 H 0.017 0.983 49 H 0.267 0.733 50 H 0.053 0.947 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.941 13.178 22.767 37.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.137 4.137 3 C -0.164 4.164 4 C -0.103 4.103 5 C -0.156 4.156 6 C -0.185 4.185 7 C -0.041 4.041 8 H 0.141 0.859 9 C 0.335 3.665 10 O -0.463 6.463 11 N -0.367 5.367 12 C -0.017 4.017 13 C -0.141 4.141 14 C 0.044 3.956 15 C -0.132 4.132 16 N -0.188 5.188 17 C -0.096 4.096 18 C -0.116 4.116 19 C -0.049 4.049 20 C -0.570 4.570 21 H 0.052 0.948 22 C -0.192 4.192 23 N -0.589 5.589 24 Si 0.773 3.227 25 H -0.189 1.189 26 H -0.205 1.205 27 H -0.177 1.177 28 C -0.125 4.125 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.144 0.856 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.149 0.851 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.051 0.949 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.032 0.968 48 H 0.035 0.965 49 H 0.076 0.924 50 H 0.071 0.929 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 26.658 12.761 22.052 36.875 hybrid contribution -0.514 1.014 -1.685 2.033 sum 26.145 13.776 20.367 35.890 Atomic orbital electron populations 1.20899 0.91939 1.01876 1.02642 1.20602 0.95896 0.93526 1.03713 1.22298 0.97023 0.97318 0.99768 1.19419 0.91233 0.96397 1.03277 1.22448 1.00788 0.93948 0.98423 1.21777 0.93921 0.99433 1.03416 1.18767 0.92911 0.92820 0.99647 0.85860 1.20643 0.78025 0.79541 0.88291 1.90693 1.62422 1.74512 1.18674 1.50284 1.52279 1.21658 1.12476 1.23605 1.04380 0.89436 0.84288 1.23151 1.03969 0.96099 0.90926 1.22785 0.91581 0.85930 0.95312 1.23889 0.92613 0.99960 0.96708 1.68884 1.03932 1.39765 1.06227 1.22621 0.96480 0.97761 0.92730 1.21120 0.93395 0.99904 0.97145 1.19512 0.94314 0.95899 0.95223 1.21450 1.01191 1.30853 1.03466 0.94804 1.26003 0.94809 0.96923 1.01478 1.70056 1.11396 1.46461 1.31028 0.85660 0.78378 0.79719 0.78900 1.18948 1.20545 1.17747 1.23988 0.97223 0.94443 0.96824 0.89436 0.91400 0.94664 0.85570 0.87140 0.88539 0.85117 0.87367 0.87618 0.86781 0.87219 0.87101 0.88016 0.92586 0.91110 0.94871 0.93548 0.92709 0.96841 0.96450 0.92393 0.92911 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 9.77 71.24 0.70 -1.43 16 2 C -0.14 -2.47 5.49 -15.52 -0.09 -2.56 16 3 C -0.15 -2.16 9.49 26.61 0.25 -1.91 16 4 C -0.07 -0.74 6.27 28.61 0.18 -0.56 16 5 C -0.14 -1.90 9.93 26.62 0.26 -1.64 16 6 C -0.17 -2.88 8.98 26.61 0.24 -2.65 16 7 C -0.02 -0.37 2.91 -13.53 -0.04 -0.41 16 8 H 0.12 1.49 7.21 -2.39 -0.02 1.47 16 9 C 0.54 13.26 5.05 87.66 0.44 13.70 16 10 O -0.58 -20.33 16.55 -3.04 -0.05 -20.38 16 11 N -0.63 -12.18 3.61 -793.31 -2.87 -15.04 16 12 C 0.10 0.94 8.16 86.33 0.70 1.64 16 13 C -0.10 -1.20 8.11 30.91 0.25 -0.95 16 14 C 0.13 2.75 1.81 3.31 0.01 2.76 16 15 C 0.00 -0.06 7.43 83.99 0.62 0.57 16 16 N -0.47 -14.10 6.32 -927.79 -5.87 -19.97 16 17 C 0.03 1.19 4.81 86.30 0.42 1.60 16 18 C -0.08 -3.32 5.48 30.59 0.17 -3.15 16 19 C -0.01 -0.58 4.04 29.84 0.12 -0.46 16 20 C -0.53 -32.29 9.66 25.60 0.25 -32.04 16 21 H 0.03 2.24 7.99 -2.91 -0.02 2.22 16 22 C 0.00 0.29 5.47 84.66 0.46 0.75 16 23 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 24 Si 0.95 46.51 27.47 68.60 1.88 48.40 16 25 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 27 H -0.25 -11.81 6.54 99.48 0.65 -11.16 16 28 C 0.01 0.14 7.64 83.99 0.64 0.78 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.18 7.85 -2.38 -0.02 1.16 16 31 H 0.03 0.83 6.61 -2.39 -0.02 0.81 16 32 H 0.13 1.53 7.82 -2.91 -0.02 1.51 16 33 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.13 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.11 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.11 0.42 7.95 -2.38 -0.02 0.40 16 39 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.06 1.85 7.05 -2.39 -0.02 1.83 16 43 H 0.07 2.51 8.08 -2.38 -0.02 2.49 16 44 H 0.03 1.24 7.31 -2.39 -0.02 1.22 16 45 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.05 2.39 8.14 -2.38 -0.02 2.37 16 47 H 0.01 0.67 7.20 -2.38 -0.02 0.65 16 48 H 0.02 0.85 7.57 -2.38 -0.02 0.83 16 49 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 50 H 0.05 1.62 7.42 -2.39 -0.02 1.61 16 51 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -79.90 405.08 -0.18 -80.08 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.83 Total: 13.87 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 5.59 Total: -25.95 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -8.44 Total: -96.01 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.05 Total: -20.38 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.88 Total: 48.40 kcal Total: -79.90 -0.18 -80.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277950503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.540 kcal (2) G-P(sol) polarization free energy of solvation -79.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds